mRNA_Ecto-sp13_S_contig18388.5709.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18388.5709.1
Unique NamemRNA_Ecto-sp13_S_contig18388.5709.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18388.5709.1 vs. uniprot
Match: D7G4X8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X8_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 5.850e-34
Identity = 72/85 (84.71%), Postives = 78/85 (91.76%), Query Frame = 3 
Query:  228 MHRLYRGGGESGEYDGVVKGDMWSDGIREAEEEREGESAMSDSRVGGSSCTLYGCTREPTHGVAGKKAEFCSRHSLAASVNVSKE 482
            MHRLYRGGGES E+ GVVK +MWSD IREAE+EREGE AMSDS VGGSSCTLYGCTR+PTHGVAGKKAEFC+RHSLA SVNVS+E
Sbjct:    1 MHRLYRGGGESSEFGGVVKEEMWSDDIREAEDEREGELAMSDSHVGGSSCTLYGCTRKPTHGVAGKKAEFCARHSLATSVNVSQE 85
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18388.5709.1 vs. uniprot
Match: A0A6H5JDP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 9.640e-21
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 3 
Query:  291 MWSDGIREAEEEREGESAMSDSRVGGSSCTLYGCTREPTHGVAGKKAEFCSRHSLAASVNVSKE 482
            MWS   REAE+EREGESAMSDS+VGGSSCT Y CTREPT GVAG+KA FCSRHSLAASVNVSKE
Sbjct:    1 MWSGDTREAEDEREGESAMSDSQVGGSSCTQYRCTREPTRGVAGQKAGFCSRHSLAASVNVSKE 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18388.5709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4X8_ECTSI5.850e-3484.71EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JDP1_9PHAE9.640e-2184.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18388contigEcto-sp13_S_contig18388:12..3294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score150.6
Seed ortholog evalue6.1e-34
Seed eggNOG ortholog2880.D7G4X8
Model size2028
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs29ZCP@1,2RXW0@2759
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-24_002520.1
Cds size471
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462945.104352-UTR-Ecto-sp13_S_contig18388:11..611681462945.104352-UTR-Ecto-sp13_S_contig18388:11..61Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18388 12..61 +
1681462945.1155355-UTR-Ecto-sp13_S_contig18388:653..8301681462945.1155355-UTR-Ecto-sp13_S_contig18388:653..830Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18388 654..830 +
1681462945.1334834-UTR-Ecto-sp13_S_contig18388:1301..16931681462945.1334834-UTR-Ecto-sp13_S_contig18388:1301..1693Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18388 1302..1693 +
1681462945.14213-UTR-Ecto-sp13_S_contig18388:2356..32941681462945.14213-UTR-Ecto-sp13_S_contig18388:2356..3294Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18388 2357..3294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462945.1246314-CDS-Ecto-sp13_S_contig18388:830..13011681462945.1246314-CDS-Ecto-sp13_S_contig18388:830..1301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18388 831..1301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18388.5709.1prot_Ecto-sp13_S_contig18388.5709.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18388 831..1301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18388.5709.1

>prot_Ecto-sp13_S_contig18388.5709.1 ID=prot_Ecto-sp13_S_contig18388.5709.1|Name=mRNA_Ecto-sp13_S_contig18388.5709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
MHRLYRGGGESGEYDGVVKGDMWSDGIREAEEEREGESAMSDSRVGGSSC
TLYGCTREPTHGVAGKKAEFCSRHSLAASVNVSKECNVDGCSTRAHYGVA
GSKKWEFSQNTRWKGWSTSPTGNTQAMVASRRHILVSQGARRRSSAPSMH
SRAWSI*
back to top

mRNA from alignment at Ecto-sp13_S_contig18388:12..3294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18388.5709.1 ID=mRNA_Ecto-sp13_S_contig18388.5709.1|Name=mRNA_Ecto-sp13_S_contig18388.5709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3283bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18388:12..3294+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGTTATAGCAGCAGGAGCGGGCGAAGCAGCGAGGAAGTAAACAAGAG
GTATTCGTGTCTGTGTTACGGGTGCATAATGTGCATGTTTTGCAAGTACC
ATCGGCCGTATGGCTCTGTCTCACGGTGTGTCGATCTCATTGAAAAACTA
CTGCCTGCGAGGTTCATCATGCGAGCACATGTACAGAAAGATGGACTTTG
TTGAACCTATCGGGAGTACTCTGTTTTTCGACGAGGACACCAACAGGGTG
CACGACGGCACGTCACTCACGGTGGTACCGAGGGAACCCCACAAGATTGT
TCATTGACACGTAGGGTGTGAGCGACGAGGCGCTGGTGCTCGTCTTGGCT
GACACGCCAGAACCTACTACTTCGTAGTGCTGTATAGCAGTTGAGGCCCA
ACACATGTCATTTCGCTGCGCGAAGCTTGGAATGAAACGACAACGGAGGG
GGGGGGGCTGCTACTTCCCGGGGCTCTCGTTCAAGTCCGACCTGTCTTGC
TGGTGTCGTTCCTCGCATCGCAAAACAGGAACACGTGTGTGAAAATCGAC
TGTTCTCGATTGTTCTGTCGTTCCTTTACGGTATGACAACAGACTGACCG
GGTCAGATGCCAAATATATTGCCTCGGTGTCAAATCACGCAGGTGTTACG
CGGTCGTTTGGTGCACCGGAACGTGGCTACTTGTGCGGTCCCGGGGACAG
CTTTGCTGTCGTAAGCAGCCACCGCTTCTTGCAGCGCATATCGATCCGCA
AGGCCTTCAAGCTGTTCAACGGCACCGAGTTAGGACACCGCTGTATTTTC
AACTACGAGGATCGGCTAGATGCATCGACTCTATCGAGGAGGGGGGGAGT
CCGGTGAGTATGATGGCGTGGTCAAGGGAGACATGTGGTCAGATGGTATT
CGAGAAGCTGAAGAAGAAAGGGAGGGAGAGTCAGCAATGAGCGATTCACG
TGTTGGTGGGAGTAGCTGCACCCTGTACGGATGCACGAGGGAACCTACTC
ACGGTGTTGCGGGCAAGAAGGCAGAGTTCTGCTCACGGCATTCTCTTGCG
GCTTCAGTCAACGTGAGCAAGGAGTGCAACGTTGACGGTTGTTCTACGCG
TGCGCATTATGGCGTGGCTGGCAGCAAGAAGTGGGAGTTTTCTCAAAACA
CGCGCTGGAAGGGATGGTCAACCTCTCCAACAGGAAATACGCAAGCGATG
GTTGCTTCACGACGGCATATTTTGGTGTCGCAGGGAGCAAGAAGAAGGAG
TTCTGCTCCAAGCATGCACTCGAGGGCATGGTCAATTTAGTGAAGAAGGC
GTGCGCGAGAAACGGCTGCTTCACGTCCGCGAGATTCGGGGTAGTAGGTG
GGCCGATGGAATTCTGCAACAAACACGCGCTGGAAGGGATGGTCAACCTC
TCCAACAGGAAATGCGCTAGCGATGGTTGCTTCACGACAGCATATTTTGG
TGTCGCAGGCAGCAAGAAGATGGAGTTCTGCTCCAAGCATGCACTCGAGG
GCATGGCCAGTCTTAAGCAGACCACGTGCATGCGAGAAGGCTGCCGGAAC
GGAGCAAGGTGCGGCCTGCCTGGTGAAAAAAAATGTCCTGCAAGAGGCAT
GCCCTTCAAGGGATGGTCAGCGCAACAAGGAAGATCTGCGAACACGGGGG
CTGTGGAAAGAGATCCATCTATGGTGTTGCAGGTATGGCGTTCTTTCGAT
TGCGTTTGTTGTTTTGCTTTAGAATTGCCTTCCTTAGTAAACACCCGAGG
AAAGAGAGAGATAGATACCGGTAGAGCACACTTCCCCCACGTAGACCATC
TCTGTGCCTTTTCAAAGGTGTCTCTGCCTTCCAGAATTGCTTCTCTCTCT
TTCCTGCGAGCGGCAACCTTTAGTTCTCTTACCTCGGTGTAGGGACTAAT
CTTACTGCACGCAGTCTTAGATGACCAAGTTTCCAAAATGGCACCCTACC
GTTTTCTTCTCCCCAGTATTGCAACTGCACCGGTGGCTGAAGTCAGTGCT
CTCCTTTCGCGCGCTTTCGAAAGAATAGGGGTGGGTGGGTCGGAAAAAAA
CCACTTCAAAAGTCAGCTCCCAGGTTGGCAGAAGCCTAGTATGTATCCCC
CTTGCTCGTCGTCTCTGCGCTACTCTCTCTCTCTCTCTCCGGCACGCTAA
ACACAAACCTTGAACAGAGCGGTAGAATGTGCAATTCTTTCTCTCCTTCG
AGGGCCTCCGCACCACGGAACGCTTGCCCGAGTATCGCATTAAAAACGGC
ATGGCAGTTTGATTTTTCAATAAAGCTTCTATTTTGCTTGTCTACGCCTT
CGTCAACGCTTCAAACCAACCCGTCATTTATGGTCGTTGTTGCAGGGACC
AAGAAGCCGGTGGCCTGCTCCGAGCATGCGGCGCAGGCAATGATCGATGT
TGTTAACAAGAAATGCGGGCAACCTGGTTGCCAAAAGTAGCCGACCCATG
GTTTGCCAGGCACCAGGACGCGGGAATTCTGCTTCGCCCACGCCCCGACG
GAGATGATCAACCTGCACATCAAGATGTGTGGCCACGAAGGATGTTCCAA
GCAAAGGAGCCACGGCGTGGTGGGCACGGAGAGTCGGGAGTTTTGTGGAG
AGCACGCAGTAGAGGGCATGGTCTCCTTGCTCGGCAAGAGGTGTGCCCAC
GAGGACTGCTCCAACAGGCCGAGCCACGGGTTGGCAGGGAGCAGGGAGAA
GAAGTTCTGCCGAACACACGCGGTGGACGGGATGGTCGTCATCCCACCGA
CGTCGAGGAAGCGACATAAGCGAGCCCGGGCGACGGCGAGCGACCCCGCT
CGGCTATGCGGTGCCTCGGTGGCCGCGTCCGATGCCTCGCCATCTTCCAA
AGAAGTTGTGGGCGTGGAGCAAGAACACCCACCATTGCCGGCGGCAGAAG
AAGGGTCAGCAACATCGGCAGGAGTCGCAGAGGCGGCCGACGAACGGAAC
CCTTCGCCAGTCGTCGCTGCTTACGAGAACTCCACCTTTATCGTTCAGTA
GGCACCCGTTGCAGTACTAAGGCGTTCGTTTCTCTTCCTCGGAGTGGATC
ATTGATGCATGTGTGGTTGGTAAGGCTTCCTGTAGCGGCCGGTGGTCCCG
CCCAACCTTCGGCATTTTCCGATTTTTGTCGTGACCATCGGCCTGAGTCC
GCAAAAAGGCCCTGGAAAGGCGACATTGGGGGGGGGAGAGAAACGGGGAT
TAGTCAGCAGGGGAAAGCACGATGAGGCTCACGCTGCCCGGAAAAGCAGG
ACGTTGTGATTGTGTGGAGCAAAAAACACTGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18388:12..3294+

>mRNA_Ecto-sp13_S_contig18388.5709.1 ID=mRNA_Ecto-sp13_S_contig18388.5709.1|Name=mRNA_Ecto-sp13_S_contig18388.5709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18388:12..3294+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGACTCTATCGAGGAGGGGGGGAGTCCGGTGAGTATGATGGCGT
GGTCAAGGGAGACATGTGGTCAGATGGTATTCGAGAAGCTGAAGAAGAAA
GGGAGGGAGAGTCAGCAATGAGCGATTCACGTGTTGGTGGGAGTAGCTGC
ACCCTGTACGGATGCACGAGGGAACCTACTCACGGTGTTGCGGGCAAGAA
GGCAGAGTTCTGCTCACGGCATTCTCTTGCGGCTTCAGTCAACGTGAGCA
AGGAGTGCAACGTTGACGGTTGTTCTACGCGTGCGCATTATGGCGTGGCT
GGCAGCAAGAAGTGGGAGTTTTCTCAAAACACGCGCTGGAAGGGATGGTC
AACCTCTCCAACAGGAAATACGCAAGCGATGGTTGCTTCACGACGGCATA
TTTTGGTGTCGCAGGGAGCAAGAAGAAGGAGTTCTGCTCCAAGCATGCAC
TCGAGGGCATGGTCAATTTAG
back to top