mRNA_Ecto-sp13_S_contig18374.5702.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18374.5702.1
Unique NamemRNA_Ecto-sp13_S_contig18374.5702.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Match: A0A835LRP9_9MAGN (Methyltransf_11 domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LRP9_9MAGN)

HSP 1 Score: 89.0 bits (219), Expect = 1.090e-18
Identity = 59/153 (38.56%), Postives = 85/153 (55.56%), Query Frame = 1
Query:   97 LVDLGCGIVGVSTNLLAREFPSARAVYGVDLSPYYLDYAV--------RKPPIVCIRRDMTDTRYCSNSADLVSISFVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNT---RATDTFMQKHLDRTEPHMQDYIEFCAYRNDVLFEAGF 522
            ++D+GC  VGVST  LA  FPSA+ V G+DLSPY+L  A         RK PI  +  +   T   SNS DLVS+++V+HE P  AI  ++ E  R+L PG +LA+ D S  +   R     +   +  TEP + +Y  +     +++ EAGF
Sbjct:   45 ILDIGCS-VGVSTRFLADRFPSAK-VTGLDLSPYFLAVAQFKEKEMIPRKNPISWVHANGEATDLPSNSFDLVSLAYVIHECPTRAIVGLVKEAFRLLRPGGMLAITDNSPKSKILRELSPVLFTLMKSTEPFLDEY--YLTDVEEIMTEAGF 193          
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Match: A0A2N9J521_FAGSY (Methyltransf_11 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J521_FAGSY)

HSP 1 Score: 91.3 bits (225), Expect = 1.830e-18
Identity = 65/156 (41.67%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   97 LVDLGCGIVGVSTNLLAREFPSARAVYGVDLSPYYLDYAV--------RKPPIVCIRRDMTDTRYCSNSADLVSISFVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNTRATDTF---MQKHLDRTEPHMQDYIEFCAYRNDV---LFEAGF 522
            ++D+GC  VGVST  LA +FPSA+ V G+DLSPY+L  A         RK PI+ I  +  DT   SNS DLVS++FVLHE P  AI  +  E  R+L PG  +A+ D S  ++        +   +  TEP + +Y     Y ND+   L EAGF
Sbjct:  224 ILDIGCS-VGVSTGYLADKFPSAK-VTGLDLSPYFLAVAQFKEKKRSQRKNPIIWIHANGEDTGLLSNSFDLVSMAFVLHECPEKAIVGLGKEAFRLLRPGGTIALTDNSPKSKILQELSPVLFTLMKSTEPFLDEY-----YLNDLEGTLREAGF 372          
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Match: A0A2P6V207_9CHLO (Methyltransferase type 11 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V207_9CHLO)

HSP 1 Score: 90.5 bits (223), Expect = 2.910e-18
Identity = 57/164 (34.76%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   64 MEKNELTFPQTLVDLGCGIVGVSTNLLAREFPSARAVYGVDLSPYYLDYAV-----------RKPPIVCIRRDMTDTRYCSNSADLVSISFVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNTRATDTF---MQKHLDRTEPHMQDY----IEFCAYRND 501
            M ++ L  P+ ++D+GC  VGVST  LA E+P A A+ G+D+SPY+L  A            ++  I  +  +M  T   + S DLV++ FV HE P   I +++ ECRR+L PG VLA++D +  ++        +   +  TEPH  +Y    IE C   +D
Sbjct:  190 MAQHSLAAPRDMIDVGCS-VGVSTRWLAAEWPQA-AITGLDMSPYFLAVAELRERQLGGGAGQRQRIRYMHANMESTGLPAGSFDLVAVQFVTHECPAAVIENLIRECRRLLRPGGVLAIVDNNPRSKVIQNLPPVLFTLMKSTEPHTDEYYGFDIEDCMRAHD 351          
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Match: A0A2G5CGN2_AQUCA (Methyltransf_11 domain-containing protein n=4 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CGN2_AQUCA)

HSP 1 Score: 89.7 bits (221), Expect = 5.660e-18
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   97 LVDLGCGIVGVSTNLLAREFPSARAVYGVDLSPYYL--------DYAVRKPPIVCIRRDMTDTRYCSNSADLVSISFVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNTRATDTF---MQKHLDRTEPHMQDYIEFCAYRNDVLFEAGF 522
            ++D+GC  VGVST  LA +FPSA+ V G+DLSPY+L        + A RK PI  I  +  DT   SNS DLVS+++V+HE P  AI  ++ E  R+L PG +LA+ D S  ++        +   +  TEP + +Y  +     + + +AGF
Sbjct:  204 ILDIGCS-VGVSTRFLASKFPSAK-VTGLDLSPYFLAVAQFKEKETASRKNPISWIHANGEDTGLPSNSFDLVSLAYVIHECPTRAIVGLVKEGFRLLRPGGILALTDNSPKSKILQELSPVLFTLMKSTEPFLDEY--YLTDIEETMRQAGF 352          
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Match: A0A7N2R9E9_QUELO (Methyltransf_11 domain-containing protein n=2 Tax=Fagaceae TaxID=3503 RepID=A0A7N2R9E9_QUELO)

HSP 1 Score: 89.4 bits (220), Expect = 6.840e-18
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 1
Query:   97 LVDLGCGIVGVSTNLLAREFPSARAVYGVDLSPYYLDYAV--------RKPPIVCIRRDMTDTRYCSNSADLVSISFVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNTRATDTF---MQKHLDRTEPHMQDYIEFCAYRNDVLFEAGF 522
            ++D+GC  VGVST  LA  FPSA+ V G+DLSPY+L  A         RK PI+ I     DT   SNS DLVS+++VLHE P  AI +++ E  R+L PG  +A+ D S  ++        +   L  TEP + +Y  +       L EAGF
Sbjct:  189 ILDVGCS-VGVSTGYLADNFPSAK-VTGLDLSPYFLAVAQFKEKKRSPRKNPIIWIHAKGEDTGLLSNSFDLVSMAYVLHECPENAIVNLVKEAFRLLRPGGTVALTDNSPKSKILQELSPVLFTLLKSTEPFLDEY--YLTDLEATLREAGF 337          
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Match: A0A835IQ99_9MAGN (Methyltransf_11 domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IQ99_9MAGN)

HSP 1 Score: 87.8 bits (216), Expect = 2.370e-17
Identity = 59/150 (39.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   97 LVDLGCGIVGVSTNLLAREFPSARAVYGVDLSPYYLDYAV--------RKPPIVCIRRDMTDTRYCSNSADLVSISFVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNTRATDTFMQKHLDRTEPHMQDYIEFCAYRNDVLFEAGF 522
            ++D+GC  VGVST  LA  FPSA+ V G+DLSPY+L  A         RK PI  +  +   T   SNS DLVS+++V+HE P  AI  ++ E  R+L PG +LA+ D S  +    T M+     TEP + +Y  +     + + EA F
Sbjct:  191 ILDIGCS-VGVSTRFLADRFPSAK-VTGLDLSPYFLAVAQFKEKEMVPRKNPISWVHANGEATDLPSNSFDLVSLAYVIHECPTRAIVGLVKEAFRLLRPGGMLAITDNSELSPVLFTLMKS----TEPFLDEY--YLTDVEETMTEASF 332          
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Match: A0A7S4HEA4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HEA4_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 3.410e-16
Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   91 QTLVDLGCGIVGVSTNLLAREFPSARAVYGVDLSPYYLDYAV-----RKPPIVCIRRDMTDTRYCSNSADLVSISFVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNTRATDT--FMQKHLDRTEPHMQDYIEFCAYRNDVLFEAGF 522
            + ++D+GC I GVST  +    PS ++  GVDLSP++L  A      R+ PI  +  ++ D      SADLV+I FV HELP  AI   +    R L PG V+AV+D+      +    F +   + TEPH+  Y E      DVL + GF
Sbjct:   79 EQMLDMGCSI-GVSTEEMLARLPSVQSAVGVDLSPHFLSIATYNAERRQLPIDYVHANV-DQLAMPESADLVTICFVFHELPPQAIVDTIDAALRTLRPGGVVAVLDLDPQKLVSSLSGFRKWGFEATEPHIYSYYEQDVA--DVLKQGGF 225          
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Match: A0A2I4DY02_JUGRE (uncharacterized protein LOC108984487 n=10 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4DY02_JUGRE)

HSP 1 Score: 84.7 bits (208), Expect = 3.700e-16
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 1
Query:   97 LVDLGCGIVGVSTNLLAREFPSARAVYGVDLSPYYLDYAV--------RKPPIVCIRRDMTDTRYCSNSADLVSISFVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNTRATDTF---MQKHLDRTEPHMQDYIEFCAYRNDVLFEAGF 522
            ++D+GC  VGVST  LA +FPSA+ V G+DLSPY+L  A         RK PI  I  +  DT   SNS D+VS+++VLHE P  AI +++ E  R+L PG  +A  D S  ++        +   +  TEP + +Y  +       + E GF
Sbjct:  204 ILDIGCS-VGVSTGYLADKFPSAK-VTGLDLSPYFLAVAQFKEKKRFPRKNPISWIHANGEDTGLSSNSFDIVSMAYVLHECPKRAIVNLVKEAFRLLRPGGTVAFTDNSPKSKILQELSPVLFTLMKSTEPFLDEY--YLTDLEGTMREIGF 352          
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Match: A0A834WX52_9FABA (Demethylmenaquinone methyltransferase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WX52_9FABA)

HSP 1 Score: 84.3 bits (207), Expect = 4.960e-16
Identity = 60/167 (35.93%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   55 RREMEKNELTFPQTLVDLGCGIVGVSTNLLAREFPSARAVYGVDLSPYYLDYAV--------RKPPIVCIRRDMTDTRYCSNSADLVSISFVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNTRATDTF---MQKHLDRTEPHMQDYIEFCAYRNDVLFEAGF 522
            +  ++ +E +  + ++D+GC  VG ST  LA +FP+A+ V G+DLSPY+L  A         RK  I  I  +  +T   S+S DL+SI+FVLHE P  AI +++ E  R+L PG  LA+ D+S  ++  +     +   L  TEP + +Y  +       L EAGF
Sbjct:  186 QHHLQYSETSIIRDILDIGCS-VGESTRHLADKFPTAK-VTGLDLSPYFLAVAQHKERKRVPRKNSISWIHANGENTGLPSDSFDLISIAFVLHECPERAIVNLVREAFRLLRPGGSLALTDISPKSKMIEELSPVLFTLLKSTEPFLDEY--YLTDMEGTLREAGF 348          
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Match: A0A812NHG3_9DINO (Tam protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812NHG3_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 7.540e-16
Identity = 58/147 (39.46%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   88 PQTLVDLGCGIVGVSTNLLAREFPSARAVYGVDLSPYYLDYAVRK-PPIVCIRRDMTDTRYCSNSADLVSISFVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNT-RATDTFMQKHLDRTEPHMQDYIEFCAYRNDVLFEAGF 522
            PQ L+D+GC   G ST  +A  FP+A AV G+DLSPY+L  A +  P +  +  +   T     S D+V+++F+LHELPL A  +VL E  R+L PG VLAV+D+ +   +A   F +     TEP  +D   F    +  L   GF
Sbjct:  219 PQALLDVGCS-GGFSTKEMAMAFPTASAV-GLDLSPYFLSVAKQSYPELGFVHANAECTGLPDASYDVVTLNFLLHELPLEASRNVLKEAYRLLKPGGVLAVLDVDAKRLQALPAFRRWAFQVTEPWCKDGEYFSLDLSAELNAFGF 363          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18374.5702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835LRP9_9MAGN1.090e-1838.56Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A2N9J521_FAGSY1.830e-1841.67Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A2P6V207_9CHLO2.910e-1834.76Methyltransferase type 11 n=1 Tax=Micractinium con... [more]
A0A2G5CGN2_AQUCA5.660e-1838.56Methyltransf_11 domain-containing protein n=4 Tax=... [more]
A0A7N2R9E9_QUELO6.840e-1840.52Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A835IQ99_9MAGN2.370e-1739.33Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7S4HEA4_9EUKA3.410e-1637.09Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A2I4DY02_JUGRE3.700e-1637.91uncharacterized protein LOC108984487 n=10 Tax=Jugl... [more]
A0A834WX52_9FABA4.960e-1635.93Demethylmenaquinone methyltransferase n=1 Tax=Senn... [more]
A0A812NHG3_9DINO7.540e-1639.46Tam protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18374contigEcto-sp13_S_contig18374:2879..3409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score99.0
Seed ortholog evalue2.4e-18
Seed eggNOG ortholog329726.AM1_1093
Preferred nameubiE
Model size531
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Methylase involved in ubiquinone menaquinone biosynthesis
EggNOG OGs1FZVA@1117,COG0500@1,COG2226@2
Cds size531
COG Functional cat.Q
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462944.6689122-CDS-Ecto-sp13_S_contig18374:2878..34091681462944.6689122-CDS-Ecto-sp13_S_contig18374:2878..3409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18374 2879..3409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18374.5702.1prot_Ecto-sp13_S_contig18374.5702.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18374 2879..3409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18374.5702.1

>prot_Ecto-sp13_S_contig18374.5702.1 ID=prot_Ecto-sp13_S_contig18374.5702.1|Name=mRNA_Ecto-sp13_S_contig18374.5702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MASFCPTNKLSRIFSSQTRREMEKNELTFPQTLVDLGCGIVGVSTNLLAR
EFPSARAVYGVDLSPYYLDYAVRKPPIVCIRRDMTDTRYCSNSADLVSIS
FVLHELPLVAITSVLAECRRILTPGRVLAVMDMSSNTRATDTFMQKHLDR
TEPHMQDYIEFCAYRNDVLFEAGFEVP
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mRNA from alignment at Ecto-sp13_S_contig18374:2879..3409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18374.5702.1 ID=mRNA_Ecto-sp13_S_contig18374.5702.1|Name=mRNA_Ecto-sp13_S_contig18374.5702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18374:2879..3409+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCTTTCTGTCCGACGAATAAACTTTCCCGTATTTTTAGTTCGCA AACACGCAGAGAGATGGAAAAGAACGAGCTAACCTTTCCTCAGACCCTAG TAGATTTGGGCTGTGGAATAGTAGGAGTTTCCACCAATTTACTTGCCAGG GAGTTTCCGTCTGCGAGGGCCGTATACGGGGTTGACCTGAGTCCGTACTA CCTCGACTACGCGGTTCGGAAACCTCCGATTGTCTGTATTCGTCGTGATA TGACGGACACGAGGTATTGCAGCAACTCTGCCGACCTCGTATCGATTTCG TTTGTCTTGCACGAGCTACCGTTGGTTGCAATCACAAGCGTGCTGGCAGA GTGTCGCCGCATCCTCACGCCCGGTAGGGTTCTCGCCGTAATGGACATGT CTTCCAACACAAGAGCAACGGACACGTTTATGCAGAAACATTTGGACAGG ACCGAGCCCCACATGCAGGATTACATAGAGTTTTGTGCCTACAGGAACGA TGTTCTGTTTGAAGCAGGCTTCGAAGTGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18374:2879..3409+

>mRNA_Ecto-sp13_S_contig18374.5702.1 ID=mRNA_Ecto-sp13_S_contig18374.5702.1|Name=mRNA_Ecto-sp13_S_contig18374.5702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18374:2879..3409+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCTTTCTGTCCGACGAATAAACTTTCCCGTATTTTTAGTTCGCA
AACACGCAGAGAGATGGAAAAGAACGAGCTAACCTTTCCTCAGACCCTAG
TAGATTTGGGCTGTGGAATAGTAGGAGTTTCCACCAATTTACTTGCCAGG
GAGTTTCCGTCTGCGAGGGCCGTATACGGGGTTGACCTGAGTCCGTACTA
CCTCGACTACGCGGTTCGGAAACCTCCGATTGTCTGTATTCGTCGTGATA
TGACGGACACGAGGTATTGCAGCAACTCTGCCGACCTCGTATCGATTTCG
TTTGTCTTGCACGAGCTACCGTTGGTTGCAATCACAAGCGTGCTGGCAGA
GTGTCGCCGCATCCTCACGCCCGGTAGGGTTCTCGCCGTAATGGACATGT
CTTCCAACACAAGAGCAACGGACACGTTTATGCAGAAACATTTGGACAGG
ACCGAGCCCCACATGCAGGATTACATAGAGTTTTGTGCCTACAGGAACGA
TGTTCTGTTTGAAGCAGGCTTCGAAGTGCCC
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