prot_Ecto-sp13_S_contig1836.5700.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1836.5700.1
Unique Nameprot_Ecto-sp13_S_contig1836.5700.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length252
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1836.5700.1 vs. uniprot
Match: A0A6H5JS15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS15_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 1.140e-80
Identity = 136/253 (53.75%), Postives = 175/253 (69.17%), Query Frame = 0 
Query:    1 MFLVGNLISVAVIVSEIAEFNVCFDEKLSDDDEYTAEENADHVFAFTILSLIFGLLVDASSALILSTIYRSPLDIKSAHEIPPGDMRSCAGTAMVKCVAPFFWGLVYLSGSLASISYGENSPCGGGVEGSVIQDYLMFSGGVMGLMAFFMLALAFSMCPSCCSTPQGNPQGVPPQ--GCCYNS-DSWNTRVLMKGPLLDLGWQLQGTVLSYRAGAISLKAAILLASSGVVGEVLAAFGSFAPQEVQELVAPVI 250
            MF++GNLIS+AV+ SEI E +VCF+E   +DD+ T EENA   F   +L+L+  LLVD  SA++LS +YRSPLDIKSAH+IPPGDMR C GT +V  VAPFFWGLVY +G +AS  YG+N+PCGGG  G  ++ YL  SG +M +    MLAL+F      C               GCC  + D+ + R++ K P+ DL WQ+Q  +LSYRAGA++L +A LL SSGVVGEVLAAFGS AP+E+QELV P+I
Sbjct:   78 MFVLGNLISLAVVASEIGELSVCFEENPEEDDDDTLEENASSAFGALMLNLVLSLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTFLVHFVAPFFWGLVYFTGGIASSMYGDNAPCGGGNGGDGMESYLKISGILMIVFGTGMLALSFVALMLACXXXXXXXXXXXXXXXGCCSRARDAVHKRLMSKSPIFDLAWQVQSVLLSYRAGAVNLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPII 330
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BLAST of mRNA_Ecto-sp13_S_contig1836.5700.1 vs. uniprot
Match: D8LCM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM0_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.650e-79
Identity = 135/256 (52.73%), Postives = 171/256 (66.80%), Query Frame = 0 
Query:    1 MFLVGNLISVAVIVSEIAEFNVCFDEKLSDDDEYTAEENADHVFAFTILSLIFGLLVDASSALILSTIYRSPLDIKSAHEIPPGDMRSCAGTAMVKCVAPFFWGLVYLSGSLASISYGENSPCGGGVEGSVIQDYLMFSGGVMGLMAFFMLALAFSMCPSCCSTPQGNPQGVPPQ------GCCYNS-DSWNTRVLMKGPLLDLGWQLQGTVLSYRAGAISLKAAILLASSGVVGEVLAAFGSFAPQEVQELVAPV 249
            MF++GNLIS+AV+ SEI E NVCF+E L +DD+ T EENA   +   + +L+ GLLVD  SA++LS +YRSPLDIKS H+IPPGDMR C GT +V  VAPF WGLVY +G   SI YG+N+PCGGG  G  ++ YL  SG +M +    MLAL+F      C                   GCC  + D+ + R + K P+ DL WQ+Q  +LSYRAGA+SL +A LL SSGVVGEVLAAFGS AP+E+QELV P+
Sbjct:  202 MFVLGNLISLAVVASEIGELNVCFEENLDEDDDDTPEENASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSTHKIPPGDMRHCGGTCLVHFVAPFSWGLVYWAGGYVSIMYGDNAPCGGGTGGDGLESYLTISGALMAVFGTGMLALSFVTLMFACXXXXXXXXXXXXXXXXXXXGCCSKARDAVHKRFMSKSPIFDLAWQVQSVLLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPI 457
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1836.5700.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS15_9PHAE1.140e-8053.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCM0_ECTSI1.650e-7952.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 156..251
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 70..89
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..42
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..155
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 116..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..115
NoneNo IPR availableTMHMMTMhelixcoord: 93..115
NoneNo IPR availableTMHMMTMhelixcoord: 2..24
NoneNo IPR availableTMHMMTMhelixcoord: 135..157
NoneNo IPR availableTMHMMTMhelixcoord: 44..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1836contigEcto-sp13_S_contig1836:9267..10022 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1836.5700.1mRNA_Ecto-sp13_S_contig1836.5700.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1836 2315..10413 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1836.5700.1 ID=prot_Ecto-sp13_S_contig1836.5700.1|Name=mRNA_Ecto-sp13_S_contig1836.5700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=252bp
MFLVGNLISVAVIVSEIAEFNVCFDEKLSDDDEYTAEENADHVFAFTILS
LIFGLLVDASSALILSTIYRSPLDIKSAHEIPPGDMRSCAGTAMVKCVAP
FFWGLVYLSGSLASISYGENSPCGGGVEGSVIQDYLMFSGGVMGLMAFFM
LALAFSMCPSCCSTPQGNPQGVPPQGCCYNSDSWNTRVLMKGPLLDLGWQ
LQGTVLSYRAGAISLKAAILLASSGVVGEVLAAFGSFAPQEVQELVAPVI
A*
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