mRNA_Ecto-sp13_S_contig18357.5698.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18357.5698.1
Unique NamemRNA_Ecto-sp13_S_contig18357.5698.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Match: D7G2X9_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X9_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 3.270e-49
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1
Query:    1 QMEYCENTLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLATSKKPRTKGGG 243
            QMEYCENTLRH+IDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLATSKKPRTKGGG
Sbjct:  641 QMEYCENTLRHLIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLATSKKPRTKGGG 721          
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Match: A0A4D9D4I1_9STRA (Non-specific serine/threonine protein kinase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4I1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.730e-27
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 QMEYCENTLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLATSKKPRTKGGG 243
            QMEYC  TLR +ID G+LW    +CWRL RQMLE + +IH KGIIHRD+ P NVFLDGE NVK+GDFGLAT+   R +GGG
Sbjct:  421 QMEYCAQTLRDLIDEGKLWASLPQCWRLLRQMLEALVYIHKKGIIHRDMKPANVFLDGEGNVKVGDFGLATT---RARGGG 498          
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Match: A0A6G0X998_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X998_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.410e-25
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 QMEYCE-NTLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLATS--KKPRT 231
            QMEYC  NTLR +ID  +LW+ E++ W LFRQ++E +++IHS+G+IHRD+ PPN+FLD E  VKLGDFGLAT   K PRT
Sbjct:  448 QMEYCGGNTLRDVIDQHDLWQCEEKVWTLFRQIVEAIEYIHSQGVIHRDIKPPNIFLDAEGTVKLGDFGLATKPPKDPRT 527          
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Match: A0A0D2UCR7_CAPO3 (Non-specific serine/threonine protein kinase n=4 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UCR7_CAPO3)

HSP 1 Score: 106 bits (264), Expect = 6.390e-25
Identity = 47/72 (65.28%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 QMEYCENTLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLATS 216
            QMEYCENTLR +ID  EL+++ ++ WRLFRQ+LEG+++IH +GIIHRDL P N+F+D E NVK+GDFGLAT+
Sbjct: 1063 QMEYCENTLRALID-AELYKDSEKVWRLFRQILEGLNYIHGQGIIHRDLKPSNIFIDFEGNVKIGDFGLATN 1133          
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Match: A0A485L0L6_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0L6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 8.670e-25
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 QMEYCE-NTLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLATSKKPR 228
            QMEYC  NTLR +ID   LW+ E++ W LFRQ+LE +++IHS+G+IHRD+ PPN+FLD E  VKLGDFGLAT K P+
Sbjct:  453 QMEYCGGNTLRDVIDQMSLWQSEEKVWTLFRQILEAIEYIHSEGVIHRDIKPPNIFLDSEGTVKLGDFGLAT-KPPK 528          
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Match: A0A7S2L4P1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L4P1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.240e-24
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 QMEYCENTLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLATSKKPRT 231
            QMEYC  TLRH+ID G +  +E   WRL RQ++E + +IHS+ +IHRDL P N+FLD E NV++GDFGLAT+   RT
Sbjct:  101 QMEYCSTTLRHLIDQGGILNKENEAWRLTRQIVEALCYIHSRKLIHRDLKPSNIFLDSENNVRVGDFGLATTTSNRT 177          
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Match: A0A024U8N7_9STRA (Non-specific serine/threonine protein kinase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8N7_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.110e-24
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 QMEYCE-NTLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLATSKKPR 228
            QMEYC  NTLR +ID   LW+ E + W LFRQ+LE + +IHS+G+IHRD+ PPN+FLD E  VKLGDFGLAT K P+
Sbjct:  490 QMEYCGGNTLRDVIDQMSLWKSEDKVWTLFRQILEAIAYIHSEGVIHRDIKPPNIFLDAEGTVKLGDFGLAT-KPPK 565          
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Match: A0A3R6ZKA4_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZKA4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.570e-24
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 QMEYCE-NTLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLATSKKPR 228
            QMEYC  NTLR +ID   LW+ E + W LFRQ+LE + +IHS+G+IHRD+ PPN+FLD E  VKLGDFGLAT K P+
Sbjct:   78 QMEYCGGNTLRDVIDQLSLWKSEDKVWTLFRQILEAIAYIHSEGVIHRDIKPPNIFLDAEGTVKLGDFGLAT-KPPK 153          
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Match: M4C0J3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0J3_HYAAE)

HSP 1 Score: 102 bits (253), Expect = 1.920e-23
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 QMEYCE-NTLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLA 210
            QME+CE N LR +ID G LW++  R W +FRQ+LE + +IHS+GIIHRD+ PPNVFLD E  +KLGDFGLA
Sbjct:  458 QMEFCEGNALREVIDKGALWKDPDRIWTMFRQILEALVYIHSQGIIHRDIKPPNVFLDSEGTIKLGDFGLA 528          
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Match: A0A1W0WF43_HYPDU (Non-specific serine/threonine protein kinase n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WF43_HYPDU)

HSP 1 Score: 102 bits (253), Expect = 1.950e-23
Identity = 47/72 (65.28%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 QMEYCEN-TLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTPPNVFLDGEENVKLGDFGLAT 213
            QMEYCEN TLR  ID G L+R+++R WRLFR+++EG+ +IH KGIIHRDL P NVF+D +++VK+GDFGLAT
Sbjct:  778 QMEYCENSTLRTCIDQG-LFRDQERVWRLFRELVEGLGYIHQKGIIHRDLKPANVFIDSQDHVKIGDFGLAT 848          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18357.5698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X9_ECTSI3.270e-4998.77Non-specific serine/threonine protein kinase n=1 T... [more]
A0A4D9D4I1_9STRA1.730e-2765.43Non-specific serine/threonine protein kinase n=4 T... [more]
A0A6G0X998_9STRA3.410e-2561.25Non-specific serine/threonine protein kinase n=1 T... [more]
A0A0D2UCR7_CAPO36.390e-2565.28Non-specific serine/threonine protein kinase n=4 T... [more]
A0A485L0L6_9STRA8.670e-2562.34Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S2L4P1_9STRA1.240e-2457.14Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A024U8N7_9STRA4.110e-2462.34Non-specific serine/threonine protein kinase n=2 T... [more]
A0A3R6ZKA4_9STRA5.570e-2462.34Non-specific serine/threonine protein kinase n=1 T... [more]
M4C0J3_HYAAE1.920e-2363.38Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A1W0WF43_HYPDU1.950e-2365.28Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18357contigEcto-sp13_S_contig18357:2713..3384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score175.6
Seed ortholog evalue9e-42
Seed eggNOG ortholog2880.D7G2X9
Model size243
KEGG koko:K16196
KEGG Pathwayko04138,ko04140,ko04141,ko05160,ko05162,ko05164,ko05168,ko05169,map04138,map04140,map04141,map05160,map05162,map05164,map05168,map05169
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.eukaryotic translation initiation factor 2alpha kinase activity
EggNOG OGsCOG0124@1,KOG1035@2759
EC2.7.11.1
Cds size240
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462944.456191-UTR-Ecto-sp13_S_contig18357:2712..27151681462944.456191-UTR-Ecto-sp13_S_contig18357:2712..2715Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18357 2713..2715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462944.4662979-CDS-Ecto-sp13_S_contig18357:2715..28521681462944.4662979-CDS-Ecto-sp13_S_contig18357:2715..2852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18357 2716..2852 +
1681462944.4748454-CDS-Ecto-sp13_S_contig18357:3281..33841681462944.4748454-CDS-Ecto-sp13_S_contig18357:3281..3384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18357 3282..3384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18357.5698.1prot_Ecto-sp13_S_contig18357.5698.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18357 2716..3384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18357.5698.1

>prot_Ecto-sp13_S_contig18357.5698.1 ID=prot_Ecto-sp13_S_contig18357.5698.1|Name=mRNA_Ecto-sp13_S_contig18357.5698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MEYCENTLRHIIDHGELWREEQRCWRLFRQMLEGVDFIHSKGIIHRDLTP
PNVFLDGEENVKLGDFGLATSKKPRTKGGG
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mRNA from alignment at Ecto-sp13_S_contig18357:2713..3384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18357.5698.1 ID=mRNA_Ecto-sp13_S_contig18357.5698.1|Name=mRNA_Ecto-sp13_S_contig18357.5698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18357:2713..3384+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGGAGTACTGCGAGAACACCCTGCGTCACATAATCGACCACGGTGA GCTTTGGCGAGAAGAGCAGCGGTGCTGGAGGCTCTTCCGGCAGATGTTGG AGGGCGTCGACTTCATCCACTCTAAGGGCATAATACATAGGTAGGGGAGG TAGTATAGTAGTTGATTGCACGTACAACGATCGCTCCTACCTGAAGCCAA CCCTTCGATTCAAGCGAAGTTTTCCGAAAGCATCACGTGGTTGGTGTAAG CTCGTGTGCCGGGATCGCGCGTTCAGGCGAAACAGTTGATATCCAATGCG CACAAGCATACGAAGCAGCAATCGACGTGAATCAAGCCCCAGTCTCCATG TAGCACGCCCCGATCGACATGTATCAAGCACTACTAGACATGTAGTAAGC ATGATTGGCAACTTTAGCAATAAGTGGCCGAAACGCGTGTGTGTCCTGTC AGCCGGCGTGCCATGATCCACAGCGCTCCACCGAATAAACAAAAGGTATG CAATGTCTCAGACGAAGTATTGCGTGGCGTGTCACCTAACACCGTTGCTT TTTTGTCGTGGAACGATAGGGATCTGACGCCGCCGAATGTGTTCCTGGAT GGAGAAGAGAACGTCAAGCTTGGAGACTTCGGCCTCGCCACGTCGAAAAA GCCTCGTACCAAGGGTGGTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18357:2713..3384+

>mRNA_Ecto-sp13_S_contig18357.5698.1 ID=mRNA_Ecto-sp13_S_contig18357.5698.1|Name=mRNA_Ecto-sp13_S_contig18357.5698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18357:2713..3384+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTACTGCGAGAACACCCTGCGTCACATAATCGACCACGGTGAGCT
TTGGCGAGAAGAGCAGCGGTGCTGGAGGCTCTTCCGGCAGATGTTGGAGG
GCGTCGACTTCATCCACTCTAAGGGCATAATACATAGGGATCTGACGCCG
CCGAATGTGTTCCTGGATGGAGAAGAGAACGTCAAGCTTGGAGACTTCGG
CCTCGCCACGTCGAAAAAGCCTCGTACCAAGGGTGGTGGA
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