mRNA_Ecto-sp13_S_contig1833.5692.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1833.5692.1
Unique NamemRNA_Ecto-sp13_S_contig1833.5692.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Match: D7FH73_ECTSI (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH73_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 7.930e-53
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:    1 LQVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG---LFFAPIVPRILPRTK 267
            ++VMSG LKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG   LFF PI+PRIL RTK
Sbjct:    1 MKVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSRRLFFVPILPRILLRTK 92
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BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Match: A0A6H5LCE7_9PHAE (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 8.410e-42
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    4 QVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 222
            +VMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG
Sbjct:  413 EVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 485
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BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Match: A0A835Z9Q6_9STRA (V-type H+-transporting ATPase 54 kd subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.780e-28
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    4 QVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 222
            +V SG+L+WG VHTE+FWRE AR  EAD+F +++ LI LL+SED++VV+IACYDLGEFVRFYP+GK I+KHLG
Sbjct:  350 EVRSGRLRWGVVHTERFWRENARATEADDFALIRALIGLLRSEDETVVAIACYDLGEFVRFYPTGKAILKHLG 422
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BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Match: A0A7S2H8Z8_9STRA (V-type proton ATPase subunit H n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8Z8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.210e-27
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    4 QVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 222
            +V S QLKWG VH EKFWRE A++ E +EF +LK+LIELL+S+D  VVS+ACYDLGEFVRFYP+GK+IVK+LG
Sbjct:  341 EVKSKQLKWGLVHQEKFWRENAKELEVNEFALLKELIELLRSDDPEVVSVACYDLGEFVRFYPNGKSIVKNLG 413
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BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Match: F0XWY7_AURAN (V-ATPase_H_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWY7_AURAN)

HSP 1 Score: 105 bits (262), Expect = 1.550e-27
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    4 QVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSE-DKSVVSIACYDLGEFVRFYPSGKTIVKHLG 222
            +V SG L WG VHT+KFWRE AR  EAD+F ++K L++LL  + D +VVSIACYD+GEFVRFYP+GK +VKHLG
Sbjct:    9 EVRSGDLAWGLVHTDKFWRENARAAEADDFALIKLLVQLLDGDRDPTVVSIACYDVGEFVRFYPNGKAVVKHLG 82
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BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Match: I2CP76_NANGC (V-type proton ATPase subunit H n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP76_NANGC)

HSP 1 Score: 107 bits (266), Expect = 2.160e-25
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    4 QVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 222
            +V SGQL+WG VH+EKFW+E  R  EAD+F +LK LI LL SED+ VV+IACYD+GEF RFYP+G++IVK  G
Sbjct:  335 EVASGQLRWGIVHSEKFWKENVRSLEADDFKVLKSLISLLASEDEEVVAIACYDIGEFARFYPNGRSIVKLFG 407
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BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Match: A0A7S2SKW2_9STRA (V-type proton ATPase subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKW2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.090e-24
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    4 QVMSGQLKWGP-VHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 222
            +VMS +LKWG  VH EKFWRE AR  E ++F +LK LI LLKSED  VVS+ACYDLGEFVRFYP+G++IVK+LG
Sbjct:  334 EVMSRRLKWGSLVHEEKFWRENARCLEDNDFELLKALIGLLKSEDNEVVSVACYDLGEFVRFYPNGRSIVKNLG 407
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BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Match: A0A7S2V6V1_9STRA (V-type proton ATPase subunit H n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6V1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.750e-24
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    4 QVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIV 210
            +V SGQLKWG  HTEKFWR   R  EAD+F +LKQL ELL S D+ VVSIACYD+GEFVRFYP+GK++V
Sbjct:  353 EVRSGQLKWGLCHTEKFWRNNVRSMEADDFALLKQLGELLGSADEEVVSIACYDIGEFVRFYPNGKSLV 421
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BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Match: A0A024U5Q7_9STRA (V-type proton ATPase subunit H n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024U5Q7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.750e-22
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    4 QVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 222
            +V +G L WG +HTEKFWRE    FEA+EF +++ LI+LL+S+D   VS+A YDLG+FVRFYP+GK I K LG
Sbjct:  353 EVRTGSLAWGLLHTEKFWRENVMSFEANEFELIRLLIDLLESDDPKTVSVALYDLGDFVRFYPNGKHIAKRLG 425
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BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Match: A0A485KWJ4_9STRA (V-type proton ATPase subunit H n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWJ4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.860e-21
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    4 QVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 222
            +V +G L WG +HT+KFWRE    FEA EF +++ LI+LL+S+D   VS+A YDLG+FVRFYP+GK I K LG
Sbjct:  353 EVRTGSLNWGLLHTDKFWRENVMAFEAKEFELIRLLIDLLESDDPKTVSVALYDLGDFVRFYPNGKHIAKRLG 425
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1833.5692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH73_ECTSI7.930e-5390.22V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A6H5LCE7_9PHAE8.410e-4298.63V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A835Z9Q6_9STRA6.780e-2868.49V-type H+-transporting ATPase 54 kd subunit n=1 Ta... [more]
A0A7S2H8Z8_9STRA1.210e-2769.86V-type proton ATPase subunit H n=1 Tax=Dictyocha s... [more]
F0XWY7_AURAN1.550e-2764.86V-ATPase_H_C domain-containing protein (Fragment) ... [more]
I2CP76_NANGC2.160e-2564.38V-type proton ATPase subunit H n=1 Tax=Nannochloro... [more]
A0A7S2SKW2_9STRA1.090e-2468.92V-type proton ATPase subunit H n=1 Tax=Rhizochromu... [more]
A0A7S2V6V1_9STRA1.750e-2469.57V-type proton ATPase subunit H n=1 Tax=Fibrocapsa ... [more]
A0A024U5Q7_9STRA5.750e-2258.90V-type proton ATPase subunit H n=11 Tax=Aphanomyce... [more]
A0A485KWJ4_9STRA2.860e-2157.53V-type proton ATPase subunit H n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1833contigEcto-sp13_S_contig1833:189..859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score169.5
Seed ortholog evalue7e-40
Seed eggNOG ortholog2880.D7FH73
Preferred nameATP6V1H
Model size270
KEGG koko:K02144
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006403,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0006897,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008340,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010506,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016032,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030234,GO:0030641,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033227,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050690,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Exons3
EggNOG free text desc.proton-transporting ATPase activity, rotational mechanism
EggNOG OGsCOG5231@1,KOG2759@2759
Ec32 ortholog descriptionATPase, V1 complex, subunit H, C-terminal
Ec32 orthologEc-00_000200.1
Cds size261
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462944.0872107-CDS-Ecto-sp13_S_contig1833:188..2371681462944.0872107-CDS-Ecto-sp13_S_contig1833:188..237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1833 189..237 -
1681462944.1010442-CDS-Ecto-sp13_S_contig1833:384..4971681462944.1010442-CDS-Ecto-sp13_S_contig1833:384..497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1833 385..497 -
1681462944.1114671-CDS-Ecto-sp13_S_contig1833:751..8501681462944.1114671-CDS-Ecto-sp13_S_contig1833:751..850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1833 752..850 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462944.1220968-UTR-Ecto-sp13_S_contig1833:850..8591681462944.1220968-UTR-Ecto-sp13_S_contig1833:850..859Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1833 851..859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1833.5692.1prot_Ecto-sp13_S_contig1833.5692.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1833 189..850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1833.5692.1

>prot_Ecto-sp13_S_contig1833.5692.1 ID=prot_Ecto-sp13_S_contig1833.5692.1|Name=mRNA_Ecto-sp13_S_contig1833.5692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIAC
YDLGEFVRFYPSGKTIVKHLGLFFAPIVPRILPRTK*
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mRNA from alignment at Ecto-sp13_S_contig1833:189..859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1833.5692.1 ID=mRNA_Ecto-sp13_S_contig1833.5692.1|Name=mRNA_Ecto-sp13_S_contig1833.5692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=671bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1833:189..859- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGGTCATGTCCGGCCAACTGAAGTGGGGGCCGGTGCACACGGAGAA
GTTCTGGAGGGAACAGGCCAGGAAGTTCGAGGCCGACGAGTTCTTCATCC
TCAAACAGGTCGGAGAACGCCCTGTGGCATTGTTGCTGCTGCTTACGTTG
TTGTTATTGTTGTTTTTGTTGTTGTTTCTTGGAATGTTGTTGTCCTTGGG
ATGACGACCGTTTGTGACAGGTAATCCCAAACCACGCACTCACACCCGTG
GATGCTCCCTCCCTCCCTCTCCCTCCCCCTCCTTACCCTCCCTCCCTTTC
CTCCCGATGGTTTTGCGTACGCACCTCGTTCCGTCTTGCCGCTATGTTCT
CTTCTCATCCAGCTTATCGAGCTCCTCAAGTCAGAGGACAAGAGCGTTGT
GTCCATCGCGTGCTATGACCTGGGGGAGTTCGTGCGCTTCTACCCTAGCG
GCAAGACAATCGTAAAACACCTAGGGTGAGTGGAAAATTGGCAACAAGAG
ACTTAGCGTAAAATTGCTGTACGCAAGAGTTTCGCTACAGTTTAGAACTA
CGAGGAAGTATTTATTTCGACCTCGCTGGCCGTTGTCGTTGTCCTTGGGG
CCCTCGAAAGGAGGAGCTGAAGGTTGTTCTTTGCGCCAATTGTTCCACGT
ATTTTACCTAGAACCAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1833:189..859-

>mRNA_Ecto-sp13_S_contig1833.5692.1 ID=mRNA_Ecto-sp13_S_contig1833.5692.1|Name=mRNA_Ecto-sp13_S_contig1833.5692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1833:189..859- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGCCAACTGAAGTGGGGGCCGGTGCACACGGAGAAGTTCTGGAG
GGAACAGGCCAGGAAGTTCGAGGCCGACGAGTTCTTCATCCTCAAACAGC
TTATCGAGCTCCTCAAGTCAGAGGACAAGAGCGTTGTGTCCATCGCGTGC
TATGACCTGGGGGAGTTCGTGCGCTTCTACCCTAGCGGCAAGACAATCGT
AAAACACCTAGGGTTGTTCTTTGCGCCAATTGTTCCACGTATTTTACCTA
GAACCAAATGA
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