mRNA_Ecto-sp13_S_contig18329.5691.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18329.5691.1
Unique NamemRNA_Ecto-sp13_S_contig18329.5691.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18329.5691.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.010e-15
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 NQTPLTAASVIGSSRVVEDLLRQGASVSVADSDGYSALHHAVYRN 135
            NQTPL  ASVIGSSRVV DLLRQGASVSVADSDG +ALHH+VY N
Sbjct:   29 NQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHN 73
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BLAST of mRNA_Ecto-sp13_S_contig18329.5691.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.200e-15
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 NQTPLTAASVIGSSRVVEDLLRQGASVSVADSDGYSALHHAVYR 132
            NQTPL  ASVIGSSRVV DLLRQGASVSVADSDGY+ALHHAVY 
Sbjct:  450 NQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYH 493
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BLAST of mRNA_Ecto-sp13_S_contig18329.5691.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 5.620e-15
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 NQTPLTAASVIGSSRVVEDLLRQGASVSVADSDGYSALHHAVYR 132
            NQTPL  ASVIG SRVV DLLRQGASVSVADSDGY+ALHHAVY 
Sbjct:   35 NQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYH 78
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BLAST of mRNA_Ecto-sp13_S_contig18329.5691.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 5.720e-15
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 NQTPLTAASVIGSSRVVEDLLRQGASVSVADSDGYSALHHAVYR 132
            NQTPL  ASVIGSSRVV DLLRQGASVS+ADSDGY ALHHAVY 
Sbjct:  419 NQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYH 462
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BLAST of mRNA_Ecto-sp13_S_contig18329.5691.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.040e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 NQTPLTAASVIGSSRVVEDLLRQGASVSVADSDGYSALHHAVYR 132
            N TPL  ASVIGSSRVV+DLLRQGASVSVADSDGY+ALHH+VY 
Sbjct:   29 NHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYH 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18329.5691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LH66_ECTSI1.010e-1584.44EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JL58_9PHAE1.200e-1588.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE5.620e-1586.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE5.720e-1586.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE1.040e-1484.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18329contigEcto-sp13_S_contig18329:864..1010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score77.4
Seed ortholog evalue2.1e-12
Seed eggNOG ortholog2880.D8LH66
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size147
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462944.0399103-CDS-Ecto-sp13_S_contig18329:863..10101681462944.0399103-CDS-Ecto-sp13_S_contig18329:863..1010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18329 864..1010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18329.5691.1prot_Ecto-sp13_S_contig18329.5691.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18329 864..1010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18329.5691.1

>prot_Ecto-sp13_S_contig18329.5691.1 ID=prot_Ecto-sp13_S_contig18329.5691.1|Name=mRNA_Ecto-sp13_S_contig18329.5691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
NQTPLTAASVIGSSRVVEDLLRQGASVSVADSDGYSALHHAVYRNTWP*
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mRNA from alignment at Ecto-sp13_S_contig18329:864..1010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18329.5691.1 ID=mRNA_Ecto-sp13_S_contig18329.5691.1|Name=mRNA_Ecto-sp13_S_contig18329.5691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18329:864..1010+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATCAGACACCGCTGACGGCGGCCTCCGTTATTGGTTCCTCGCGCGTTGT
CGAAGACCTTCTGCGGCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACG
GTTATTCCGCTCTGCACCACGCGGTTTATCGTAACACCTGGCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18329:864..1010+

>mRNA_Ecto-sp13_S_contig18329.5691.1 ID=mRNA_Ecto-sp13_S_contig18329.5691.1|Name=mRNA_Ecto-sp13_S_contig18329.5691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18329:864..1010+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATCAGACACCGCTGACGGCGGCCTCCGTTATTGGTTCCTCGCGCGTTGT
CGAAGACCTTCTGCGGCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACG
GTTATTCCGCTCTGCACCACGCGGTTTATCGTAACACCTGGCCGTGA
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