mRNA_Ecto-sp13_S_contig18315.5687.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18315.5687.1
Unique NamemRNA_Ecto-sp13_S_contig18315.5687.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: D7G7B1_ECTSI (Sulfotransferase, C-terminal Sulfotransferase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B1_ECTSI)

HSP 1 Score: 379 bits (973), Expect = 5.570e-130
Identity = 187/210 (89.05%), Postives = 194/210 (92.38%), Query Frame = 1
Query:   46 IMCAAAATAATLVVTLTVARCGPSTGGAQRQDRFGSGSLGEYRDQGGNSGGGGVASGRTLRGFIKKPPSPPRCFVLDGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGTIKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSWQFKYDRE 675
            ++CAAAA A  LVV L VARCGPSTGGAQRQDR G+GSLGEYRDQGG+SGG  VASGRTL GFIKKPP P RCFVL+GEDSSRCHANVYFFGVSKCGTTSLAHWMARHPAL WVSN WHTRHK GGEAHVME+ TIKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRI+DMYGKTSYDGTVKYIAVLREPVARTISSWQFKYD E
Sbjct:    1 MICAAAAAA--LVVALAVARCGPSTGGAQRQDRSGNGSLGEYRDQGGSSGGVAVASGRTLHGFIKKPPPPARCFVLEGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALSWVSNVWHTRHKQGGEAHVMEMSTIKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIRDMYGKTSYDGTVKYIAVLREPVARTISSWQFKYDLE 208          
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: A0A6H5JZE4_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZE4_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 1.950e-115
Identity = 179/225 (79.56%), Postives = 187/225 (83.11%), Query Frame = 1
Query:    1 SRGDRTETWASRRVVIMCAAAATAATLVVTLTVARCGP-STGGAQRQDRFGSGSLGEYRDQGGNSGGGGVASGR-TLRGFIKKPPSPPRCFVLDGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGTIKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSWQFKYD 669
            S GDRTETWASRR V           LVVTLTVA CGP STGGAQRQDRFG+GSLGEYRDQGGNS          TLRGF        RCFVL+GEDSSRCHANVYFFGVSKCGTTSLAHWMARHPAL+WVSNT HT+HK GGEAHVME+ TIK++ESTYALTAPM AQTD VIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSW+FKYD
Sbjct:   22 SGGDRTETWASRRAVXXXXXXXXXXXLVVTLTVAYCGPRSTGGAQRQDRFGNGSLGEYRDQGGNSXXXXXXXXXXTLRGFXXXXXXXXRCFVLEGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALQWVSNTCHTQHKQGGEAHVMEMSTIKNSESTYALTAPMTAQTDKVIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSWEFKYD 246          
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: D8LLL8_ECTSI (Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL8_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.090e-27
Identity = 66/147 (44.90%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  259 RCFVLDGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTW--HTRHKDG-GEAHVMELGTIKD-------NESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSWQFKYD 669
            RCFV   E   RC+  V+FFG SKCGTTSLA W+  HPA  WV+N    H   + G  EAHV +     D       +     +T P +   D VIDYTPHY  +AE P+RI D+YG    +  +K+I  LREP  R ISSW+FK +
Sbjct:  158 RCFV-GAEGDHRCYPTVFFFGTSKCGTTSLARWLDHHPATHWVANPRRPHQIEETGVKEAHVFDDPPKGDPAFEEGMHHEKLFITTPKSGAEDVVIDYTPHYIAVAETPHRIADIYG--GRESGLKFIVTLREPAGRAISSWEFKNE 301          
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: A0A6H5L1A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 7.360e-26
Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 1
Query:  172 RDQGGNSGGGGVASGRTLRGFIKKPPS----PPRCFVLDGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGT-----IKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMY---GKTSYDGTVKYIAVLREPVARTISSWQFKYDREY 678
            R++G   GGGG   G  L        +      RC+  D   + RC   V+FFGVSKCGTTSL++W++ HP   +V         D  EAHV +        + D     +L+ P+A+  DTVID+TP+Y+I+ E P RI D Y   G       ++++ VLREPVARTISSWQ+K +RE+
Sbjct:  211 REKGVRDGGGGXGEGELLSSEELADETLADGKARCWT-DEAGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPP---EAHDYREAHVFDNTPRYWHGVSDRGKRESLS-PVASSRDTVIDFTPNYAIVGEAPLRIYDYYHQAGGGRLRSNLRFLVVLREPVARTISSWQYKSEREH 386          
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: D7FHD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD4_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 6.970e-23
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  259 RCFVLDGEDSSRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGT-----IKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMY---GKTSYDGTVKYIAVLREPVARTISSWQFKYD 669
            RC+  D   + RC   V+FFGVSKCGTTSL++W++ HP   +V         D  EAHV +        + D     +L+ PMA+  DTVID+TP+Y+I+ E P RI D Y   G       ++++ VLREPVARTISSW++K +
Sbjct:  246 RCWT-DEAGNGRCLPTVFFFGVSKCGTTSLSNWLSSHPRAVFVPPP---EAHDYREAHVFDNTPKYWHGVSDRGKRESLS-PMASWRDTVIDFTPNYAIVGEAPLRIYDYYHQAGGGRLRSNLRFLVVLREPVARTISSWEYKSE 385          
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: A0A835YNP6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.360e-21
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  289 SRCHANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGTIKDNESTYALTAPMAAQ-TDTVIDYTPHYSILAEVPYRIKDMYGKTSYDGTVKYIAVLREPVARTISSWQFK 663
            +RC  NV FFGVSK GTTSLAHW+++HP ++++        +       ++  T+ D        AP A   +D V+DYTPHY+++ EVPYRI  +   +S     K+I +LREP  R ISSW+FK
Sbjct:    4 TRCLPNVVFFGVSKAGTTSLAHWLSQHPQVKFMGG------RPSESRAYLKGRTLADIRERSKRLAPSADPVSDVVVDYTPHYAMVPEVPYRICHLLDCSS----TKFIVLLREPAERAISSWRFK 119          
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Match: A0A8J2SXJ9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXJ9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.140e-6
Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 1
Query:  310 YFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGTIKDNESTYALTAPMAAQTD--------TVIDYTPHYSILAE-VPYRIKDMYGKTSYDGTV--KYIAVLREPVARTISSWQFK 663
            +F G SKC T+S+A  +ARHPA+     T H      GEAHV +       ++  AL   + A+            ++YTP Y   A  VP  +      T+       +++  LREPVAR +SSWQFK
Sbjct:   25 FFIGSSKCATSSIAAALARHPAI-----TSHAGQGGQGEAHVFDGDHRAHVKNAKALLRRLQAKLRKNPKPGALASMEYTPEYLFEANHVPACLCGALQLTAAARCANRRFLVTLREPVARAVSSWQFK 148          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18315.5687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G7B1_ECTSI5.570e-13089.05Sulfotransferase, C-terminal Sulfotransferase, N-t... [more]
A0A6H5JZE4_9PHAE1.950e-11579.56Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D8LLL8_ECTSI1.090e-2744.90Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6H5L1A9_9PHAE7.360e-2639.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD4_ECTSI6.970e-2342.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNP6_9STRA7.360e-2142.06P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8J2SXJ9_9STRA3.140e-634.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18315contigEcto-sp13_S_contig18315:1942..3102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score119.4
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog2880.D8LLL8
Model size684
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.heparan sulfate sulfotransferase activity
EggNOG OGsKOG3704@1,KOG3704@2759
Ec32 ortholog descriptionSulfotransferase
Ec32 orthologEc-04_003480.1
Cds size684
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462943.586082-CDS-Ecto-sp13_S_contig18315:1941..24611681462943.586082-CDS-Ecto-sp13_S_contig18315:1941..2461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18315 1942..2461 +
1681462943.5992002-CDS-Ecto-sp13_S_contig18315:2938..31021681462943.5992002-CDS-Ecto-sp13_S_contig18315:2938..3102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18315 2939..3102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18315.5687.1prot_Ecto-sp13_S_contig18315.5687.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18315 1942..3102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18315.5687.1

>prot_Ecto-sp13_S_contig18315.5687.1 ID=prot_Ecto-sp13_S_contig18315.5687.1|Name=mRNA_Ecto-sp13_S_contig18315.5687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
SRGDRTETWASRRVVIMCAAAATAATLVVTLTVARCGPSTGGAQRQDRFG
SGSLGEYRDQGGNSGGGGVASGRTLRGFIKKPPSPPRCFVLDGEDSSRCH
ANVYFFGVSKCGTTSLAHWMARHPALRWVSNTWHTRHKDGGEAHVMELGT
IKDNESTYALTAPMAAQTDTVIDYTPHYSILAEVPYRIKDMYGKTSYDGT
VKYIAVLREPVARTISSWQFKYDREYT*
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mRNA from alignment at Ecto-sp13_S_contig18315:1942..3102+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18315.5687.1 ID=mRNA_Ecto-sp13_S_contig18315.5687.1|Name=mRNA_Ecto-sp13_S_contig18315.5687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18315:1942..3102+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGGGGGGACCGTACCGAGACCTGGGCCTCTCGAAGGGTGGTCATCAT GTGCGCCGCCGCCGCCACCGCGGCCACCCTCGTCGTGACGCTTACAGTCG CGCGCTGTGGCCCTAGCACAGGTGGTGCCCAACGTCAAGACCGCTTCGGG AGCGGGAGTCTCGGCGAGTACAGGGACCAAGGAGGCAACAGCGGGGGGGG GGGAGTCGCGAGCGGGAGGACCTTGCGCGGGTTCATCAAGAAGCCACCCT CACCCCCGCGGTGCTTCGTGTTGGACGGCGAGGACAGCTCGCGGTGCCAC GCTAACGTGTACTTCTTCGGCGTGTCCAAGTGCGGAACAACCTCCCTGGC GCACTGGATGGCCCGGCACCCCGCCCTACGTTGGGTTTCTAATACCTGGC ACACCCGGCATAAGGACGGGGGAGAGGCGCACGTGATGGAGTTGGGCACC ATCAAGGACAATGAGAGCACCTACGCCTTGACTGCGCCGATGGCTGCGCA GACGGACACGGTCATAGACTGTGAGTGCCGCATGGGGCTTAGGTGGCGTG CGGTTGCGAGATTGACGGCGGACTTCGGTGTTTTTTCTTGCGGAGCATGG TCCCAACCCACCTTTCTAAGTTGAGGCCGGTCCAAGCACCAATGGAAGTA GCACTGCAATCCGTCGTCATCACGGTTTATTCGCATCGGTTCCATACAAA GAAGCCTGGGAATGTAGTGGCCATGACCGTGATGGGGGGGGGGGGGGACG AAGCGTTTGGTGTAGTAGGATCGATGGAGGCGTTGTTCGTGTTGGGGATG AATGGGGGGAGACTAGTAGAGGCGGCTCAACGGCGTACGGGACAACATTC AAAAGCGAGTAATCGGTGTTTGTTTCGCCATTGCTGAACCGCTCTAATTG AAACCTCTCTCTCCCCTGCCGTTGCCGATGACGCTGCTGCGGATGCTGTT GCTGCTCCTCCTGCCCCTTGTGCTATTTTTGTTGTTCCTGGCCGCAGACA CACCACACTATTCAATCCTGGCGGAAGTGCCTTACCGTATCAAAGATATG TACGGGAAGACTTCCTACGATGGGACTGTAAAGTACATCGCGGTCCTCAG GGAGCCGGTGGCCCGCACAATAAGCTCCTGGCAGTTCAAGTATGACCGTG AGTACACATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18315:1942..3102+

>mRNA_Ecto-sp13_S_contig18315.5687.1 ID=mRNA_Ecto-sp13_S_contig18315.5687.1|Name=mRNA_Ecto-sp13_S_contig18315.5687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18315:1942..3102+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGGGGGGACCGTACCGAGACCTGGGCCTCTCGAAGGGTGGTCATCAT
GTGCGCCGCCGCCGCCACCGCGGCCACCCTCGTCGTGACGCTTACAGTCG
CGCGCTGTGGCCCTAGCACAGGTGGTGCCCAACGTCAAGACCGCTTCGGG
AGCGGGAGTCTCGGCGAGTACAGGGACCAAGGAGGCAACAGCGGGGGGGG
GGGAGTCGCGAGCGGGAGGACCTTGCGCGGGTTCATCAAGAAGCCACCCT
CACCCCCGCGGTGCTTCGTGTTGGACGGCGAGGACAGCTCGCGGTGCCAC
GCTAACGTGTACTTCTTCGGCGTGTCCAAGTGCGGAACAACCTCCCTGGC
GCACTGGATGGCCCGGCACCCCGCCCTACGTTGGGTTTCTAATACCTGGC
ACACCCGGCATAAGGACGGGGGAGAGGCGCACGTGATGGAGTTGGGCACC
ATCAAGGACAATGAGAGCACCTACGCCTTGACTGCGCCGATGGCTGCGCA
GACGGACACGGTCATAGACTACACACCACACTATTCAATCCTGGCGGAAG
TGCCTTACCGTATCAAAGATATGTACGGGAAGACTTCCTACGATGGGACT
GTAAAGTACATCGCGGTCCTCAGGGAGCCGGTGGCCCGCACAATAAGCTC
CTGGCAGTTCAAGTATGACCGTGAGTACACATGA
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