mRNA_Ecto-sp13_S_contig18314.5686.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18314.5686.1
Unique NamemRNA_Ecto-sp13_S_contig18314.5686.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Match: A0A6H5KQV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.440e-13
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = -3 
Query:  305 LIVDSKARMVARSFTQIPGVDYHHSSSACPSAASIKRVVAEAAEKSMK 448
            LIVD KARMVAR F+QIPG+D+HHSSSACPSAASIK V+A A EK  K
Sbjct:   42 LIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKK 89
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BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Match: A0A6H5L7A5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.550e-12
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = -3 
Query:  305 LIVDSKARMVARSFTQIPGVDYHHSSSACPSAASIKRVVAEAAEKSMK 448
            LIVD KARMVAR F+QIPG+D+HHSSSACPSAASIK V+A A EK  K
Sbjct:  169 LIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKK 216
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BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Match: A0A6H5K1K3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.900e-12
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = -3 
Query:  281 LIVDSKARMVARSFTQIPGVDYHHSSSACPSAASIKRVVAEAAEKSMKTVRENPRR 448
            LIVD KARMVAR F+QIPG+D+HHSSSACPSAAS K V+A A EK  K V  N ++
Sbjct:  344 LIVDFKARMVARGFSQIPGIDFHHSSSACPSAASFKTVIAVATEKGTKLVHWNVKQ 399
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BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Match: A0A6H5K2N9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.970e-12
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = -3 
Query:  305 LIVDSKARMVARSFTQIPGVDYHHSSSACPSAASIKRVVAEAAEKSMK 448
            LIVD KARMVAR F QIPG+D+HHSSSACPSAASIK V+A A EKS K
Sbjct:  167 LIVDFKARMVARGFLQIPGIDFHHSSSACPSAASIKTVIAVATEKSKK 214
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.150e-12
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = -3 
Query:  305 LIVDSKARMVARSFTQIPGVDYHHSSSACPSAASIKRVVAEAAEKSMK 448
            LIVD KARMVAR F+QIPG+D+HHSSSACPSAASIK V+A A EK  K
Sbjct:  168 LIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKK 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Match: A0A6H5JUE2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.280e-12
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = -3 
Query:  305 LIVDSKARMVARSFTQIPGVDYHHSSSACPSAASIKRVVAEAAEKSMK 448
            LIVDSKARMVAR F++IPG+D+HHSSSACPSAASIK V+A A EK  K
Sbjct:   76 LIVDSKARMVARGFSRIPGIDFHHSSSACPSAASIKTVIAVATEKGKK 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 7.290e-12
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = -3 
Query:  305 LIVDSKARMVARSFTQIPGVDYHHSSSACPSAASIKRVVAEAAEKSMK 448
            LIVD+KARMVAR F+QIPG+D+HHSSSACPSAASIK V+A A EK  K
Sbjct:   76 LIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKK 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 7.410e-12
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = -3 
Query:  305 LIVDSKARMVARSFTQIPGVDYHHSSSACPSAASIKRVVAEAAEKSMK 448
            LIVD KARMVAR F+QIPG+D+HHSSSACPSAASIK V+A A EK  K
Sbjct:  168 LIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAAATEKGKK 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Match: A0A6H5JDR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.020e-11
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = -3 
Query:  305 LIVDSKARMVARSFTQIPGVDYHHSSSACPSAASIKRVVAEAAEKSMK 448
            LIVD KARMVAR F+QIPG+D+HHSSSACPSAASIK V+A A EK  K
Sbjct:   60 LIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKK 107
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.030e-11
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = -3 
Query:  305 LIVDSKARMVARSFTQIPGVDYHHSSSACPSAASIKRVVAEAAEKSMK 448
            LIVD KARMVAR F+QIPG+D+HHSSSACPSAASIK V+A A EK  K
Sbjct:  273 LIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKK 320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18314.5686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQV1_9PHAE1.440e-1377.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L7A5_9PHAE3.550e-1277.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1K3_9PHAE3.900e-1267.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2N9_9PHAE4.970e-1279.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE5.150e-1277.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUE2_9PHAE5.280e-1277.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1G1_9PHAE7.290e-1277.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRB0_9PHAE7.410e-1277.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JDR8_9PHAE1.020e-1177.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE1.030e-1177.08Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18314contigEcto-sp13_S_contig18314:513..962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size450
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462943.532085-UTR-Ecto-sp13_S_contig18314:512..5321681462943.532085-UTR-Ecto-sp13_S_contig18314:512..532Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18314 513..532 +
1681462943.556327-UTR-Ecto-sp13_S_contig18314:895..9621681462943.556327-UTR-Ecto-sp13_S_contig18314:895..962Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18314 896..962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462943.542849-CDS-Ecto-sp13_S_contig18314:532..8951681462943.542849-CDS-Ecto-sp13_S_contig18314:532..895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18314 533..895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18314.5686.1prot_Ecto-sp13_S_contig18314.5686.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18314 533..895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18314.5686.1

>prot_Ecto-sp13_S_contig18314.5686.1 ID=prot_Ecto-sp13_S_contig18314.5686.1|Name=mRNA_Ecto-sp13_S_contig18314.5686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MSWRRSRSSTRRSGRSWRRGNAEARGAASRPISAAACSRLDVAVVVVAAV
AQGAVAEAAMGKRDWCHDRAGTFTRTGRPPKERRASVRRGFSRTVFMLFS
AASATTLLMDAADGHAEDEW*
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mRNA from alignment at Ecto-sp13_S_contig18314:513..962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18314.5686.1 ID=mRNA_Ecto-sp13_S_contig18314.5686.1|Name=mRNA_Ecto-sp13_S_contig18314.5686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18314:513..962+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGACGTTGACCTGAGACGATGTCCTGGAGGAGGTCACGATCGAGTACA
AGACGCTCCGGCAGAAGCTGGAGAAGGGGAAATGCAGAAGCGCGCGGGGC
AGCGAGCAGGCCTATCTCGGCCGCAGCGTGCAGTCGTCTCGACGTGGCCG
TTGTGGTGGTCGCAGCGGTGGCCCAGGGGGCGGTGGCAGAAGCGGCGATG
GGGAAAAGAGATTGGTGTCACGACAGGGCAGGGACATTCACAAGAACTGG
TAGGCCACCCAAGGAGCGGAGGGCATCAGTGCGACGCGGATTTTCTCGGA
CAGTTTTCATGCTCTTTTCGGCGGCTTCGGCAACCACTCTCTTGATGGAT
GCTGCAGACGGGCATGCTGAGGATGAGTGGTGATAGTCTACACCGGGGAT
CTGGGTGAAGCTACGCGCAACCATACGTGCTTTGGAATCAACGATCAGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18314:513..962+

>mRNA_Ecto-sp13_S_contig18314.5686.1 ID=mRNA_Ecto-sp13_S_contig18314.5686.1|Name=mRNA_Ecto-sp13_S_contig18314.5686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18314:513..962+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTGGAGGAGGTCACGATCGAGTACAAGACGCTCCGGCAGAAGCTG
GAGAAGGGGAAATGCAGAAGCGCGCGGGGCAGCGAGCAGGCCTATCTCGG
CCGCAGCGTGCAGTCGTCTCGACGTGGCCGTTGTGGTGGTCGCAGCGGTG
GCCCAGGGGGCGGTGGCAGAAGCGGCGATGGGGAAAAGAGATTGGTGTCA
CGACAGGGCAGGGACATTCACAAGAACTGGTAGGCCACCCAAGGAGCGGA
GGGCATCAGTGCGACGCGGATTTTCTCGGACAGTTTTCATGCTCTTTTCG
GCGGCTTCGGCAACCACTCTCTTGATGGATGCTGCAGACGGGCATGCTGA
GGATGAGTGGTGA
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