mRNA_Ecto-sp13_S_contig18312.5685.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18312.5685.1
Unique NamemRNA_Ecto-sp13_S_contig18312.5685.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Match: D7FTM6_ECTSI (Putative fusion of putative sugar/xylulosekinase and ribulose-phosphate epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM6_ECTSI)

HSP 1 Score: 403 bits (1035), Expect = 2.110e-137
Identity = 222/235 (94.47%), Postives = 226/235 (96.17%), Query Frame = 1
Query:    1 VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVLEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVLERYRTVYPALKPVFRDQGAGAPPXXXXXXXXXXXXXXXXXAEGETGAVVVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVL 705
            VCLDHFQGNRTPYTDPLSRG LAGLTLKHGRGH+FRGLIESVCLGTELV EAMRKAGYTPSSVAVAGGATNSRLWLQTHADV NVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTV+PNPEAHA+YKRVLERYR VYPALKP+FRDQGAGAPP  XXXXXXXXXXXXXXX EGET AVV GLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVL
Sbjct:   38 VCLDHFQGNRTPYTDPLSRGALAGLTLKHGRGHVFRGLIESVCLGTELVFEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVSNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVMPNPEAHAEYKRVLERYRAVYPALKPLFRDQGAGAPPTAXXXXXXXXXXXXXXXXEGETAAVV-GLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVL 271          
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Match: A0A6H5K691_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K691_9PHAE)

HSP 1 Score: 410 bits (1054), Expect = 2.750e-136
Identity = 226/235 (96.17%), Postives = 229/235 (97.45%), Query Frame = 1
Query:    1 VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVLEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVLERYRTVYPALKPVFRDQGAGAPPXXXXXXXXXXXXXXXXXAEGETGAVVVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVL 705
            VCLDHFQGNRTPYTDPLSRG LAGLTLKHGRGH+FRGLIESVCLGTELV EAMRKAGYTPSSVAVAGGATNSRLWLQTHADV NVPMKVTREREAC+LGSAILAAVGGGLFPDIPSAARAMVHVEGTV+PNPEAHAKYKRVLERYR VYPALKPVFRDQGAGAP XXXXXXXXXXXXXXXXXAEGETGA VVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVL
Sbjct:  346 VCLDHFQGNRTPYTDPLSRGALAGLTLKHGRGHIFRGLIESVCLGTELVFEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVSNVPMKVTREREACLLGSAILAAVGGGLFPDIPSAARAMVHVEGTVMPNPEAHAKYKRVLERYRAVYPALKPVFRDQGAGAPXXXXXXXXXXXXXXXXXXAEGETGAAVVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVL 580          
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Match: A0A2P6TT72_CHLSO (Glycerol kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TT72_CHLSO)

HSP 1 Score: 254 bits (649), Expect = 2.170e-76
Identity = 133/242 (54.96%), Postives = 165/242 (68.18%), Query Frame = 1
Query:    1 VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVLEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVLERYRTVYPALKPVF------RDQGAGAPPXXXXXXXXXXXXXXXXXAEGETGAVVVG-----LVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVF 693
            VCLDHFQGNRTP+TD LSRG + GLTLKHGRGH+FR LIES+C GTE +LE MR AG+TP SV VAGGAT S LWLQTHADV NVP  +T+  +A  LG AILAAV  GLFPD+P+A  AMVH +  V P+P+ HA+Y+R  + Y+ +YPALKP F      + QGA AP                  A G + +V  G     +V+ SIL+AD A L+ +V+RV+ AGA+W+HVD+ D VF
Sbjct:  342 VCLDHFQGNRTPHTDALSRGAITGLTLKHGRGHVFRALIESICFGTEHILETMRAAGFTPDSVTVAGGATRSELWLQTHADVSNVPFILTKVSDAPALGCAILAAVAAGLFPDVPAACAAMVHQDRVVQPDPQRHAEYQRHFQAYKALYPALKPGFHTAAGQQQQGAAAP-------------AAAEAANGSSRSVSKGDDLHSIVSPSILSADFAHLARDVDRVVRAGAEWVHVDIFDGVF 570          
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Match: A0A835YTS4_9STRA (Glycerol kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS4_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.330e-74
Identity = 135/246 (54.88%), Postives = 166/246 (67.48%), Query Frame = 1
Query:    1 VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVLEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTRE-REACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVLERYRTVYPALKPVFRDQGAGAP-------PXXXXXXXXXXXXXXXXXAEGE---TGAVVVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVL 705
            +CLDHFQGNRTP+TDP SRG  +GL+L H RGHMFR ++E V +GTELVLEAMRKAGY P+S+AVAGGA  S LWLQ HADV  VP+ +T+   +AC+LGSA+LAAVG GL+  IP AA AMV +E T++P+  AHA Y  V+  YR +Y +LKP+F  Q  G+         XX               A G+   T A V G+V+ASILAAD AD  GE ER + AGA W HVD+VD  FAK+L
Sbjct:  350 LCLDHFQGNRTPFTDPHSRGAFSGLSLGHTRGHMFRAVLEGVSMGTELVLEAMRKAGYQPTSIAVAGGAARSPLWLQLHADVCGVPLHITKGGTDACLLGSAMLAAVGAGLYDSIPGAAAAMVKIERTILPDKNAHAAYGPVIAHYRRLYTSLKPLFHSQAGGSAGXXXXXXXXXVTLGDKLGKPLAAVRARGDALRTAADVRGIVDASILAADFADFGGEAERALEAGAQWCHVDIVDGHFAKIL 595          
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Match: A0A061SEI4_9CHLO (Glycerol kinase (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SEI4_9CHLO)

HSP 1 Score: 244 bits (623), Expect = 1.250e-72
Identity = 127/231 (54.98%), Postives = 154/231 (66.67%), Query Frame = 1
Query:    1 VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVLEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVLERYRTVYPALKPVFRDQGAGAPPXXXXXXXXXXXXXXXXXAEGETGAVVVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVF 693
            V LDHFQGNRTP+TDPLSRG L GLTLKH R H+FR LIE+VC GTELVLEA R AG++PSS+ +AGG T S LWLQ HADV N+P ++TR  +A  LG AILAA   G FPD+ SA  AMV V+  V+P+P+ H +Y+R+LE YR++YPAL P FR   A AP                   E         +V+AS LAAD A+L+ +V   +AAGADWIHVDV D  F
Sbjct:  358 VALDHFQGNRTPHTDPLSRGALVGLTLKHTRAHIFRALIEAVCFGTELVLEAQRAAGFSPSSITIAGGVTRSPLWLQIHADVSNLPFRLTRNADAPALGCAILAATAAGAFPDVGSAVAAMVAVDRVVLPDPDRHREYRRLLEVYRSLYPALAPTFRGGVAAAP--------GTPPAPDGRSVEHFRARPTAPIVSASTLAADAANLAADVRAALAAGADWIHVDVCDGNF 580          
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Match: A0A0D2NQU3_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2NQU3_9CHLO)

HSP 1 Score: 243 bits (619), Expect = 1.020e-71
Identity = 130/243 (53.50%), Postives = 158/243 (65.02%), Query Frame = 1
Query:    1 VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVLEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVL-ERYRTVYPALKPVFRDQGAGAPPXXXXXXXXXXXXXXXXXAEGET-------------GAVVVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDN 687
            VCLDHFQGNRTP+TDPLSRG L GLTLKH RGH+FRGL+E+V  GTE VLEAMR AGY+P+S+ +AGGAT S LW+Q HADV N+P+ +T   +A  LG AILAAV  GL PDIP+A +AMV V  T+ P+P+ HA Y+R+  ERY  +YPAL+P+F      AP                  A                 G +   +V+ SILAAD A L  EVERV+AAGADWIHVD+ D 
Sbjct:  340 VCLDHFQGNRTPHTDPLSRGALVGLTLKHTRGHVFRGLVEAVAFGTEAVLEAMRGAGYSPTSLTIAGGATKSELWMQVHADVSNLPLHLTEVPDAPALGCAILAAVAAGLHPDIPTAVKAMVRVSRTITPDPQRHAVYRRLYQERYSKLYPALRPLFHAGHDHAPTPNGAPAVEEGASGQWAAAAXXXXXXXXXXXXXXXGGGLPRAIVSPSILAADFACLGDEVERVLAAGADWIHVDMFDG 582          
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Match: A0A2P6VDM7_9CHLO (Glycerol kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VDM7_9CHLO)

HSP 1 Score: 235 bits (600), Expect = 3.690e-69
Identity = 130/231 (56.28%), Postives = 163/231 (70.56%), Query Frame = 1
Query:    1 VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVLEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVLERYRTVYPALKPVFRDQGAGAPPXXXXXXXXXXXXXXXXXAEGETGAVVVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVF 693
            +CLDHFQGNRTP+TD LSRG +AGLTL+HGRGH+FR LIE++C GTE + E MR  GY+P+SV VAGGAT S LWLQTHADV NVP  +T+  +A  LG AILAAV  GL PD+P+A  AMVH +  V P+P+ HA+Y      Y+ +YPAL+P F    A    XXXXXXXXXX       A+      +  +V+ SIL+AD A+L  +V+RV+ AGA+W+HVDV D VF
Sbjct:  341 LCLDHFQGNRTPHTDALSRGAIAGLTLRHGRGHLFRALIEAICFGTEHIFETMRGQGYSPASVTVAGGATRSDLWLQTHADVSNVPFVLTKVSDAPALGCAILAAVAAGLHPDVPAACAAMVHQDRVVQPDPQRHAEYASHYAAYKQLYPALQPGFHAAAARCAXXXXXXXXXXXAEALARRAQ------LHSIVSPSILSADFANLQSDVQRVVDAGAEWVHVDVFDGVF 565          
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Match: C1MQP7_MICPC (Glycerol kinase n=3 Tax=Micromonas pusilla TaxID=38833 RepID=C1MQP7_MICPC)

HSP 1 Score: 228 bits (582), Expect = 1.100e-66
Identity = 117/233 (50.21%), Postives = 147/233 (63.09%), Query Frame = 1
Query:    1 VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVLEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVLERYRTVYPALKPVFRDQGAGAPPXXXXXXXXXXXXXXXXXAEGETGAVVVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAK 699
            V  +H QGNRTP+TDPLSRGV++GLTL+HGR H+FR ++E +  GT L+ +AM   GY PS V VAGGAT S LWLQ HADV NVP K T+  +A  LG+AILAAVG G +  +  AARAMVH+EG V P PE HA+Y R    Y+  YPAL+ V   QG+ A                   A+  T    V  +  S+LAAD  DL+GEV R++  GADW+HVD++D  F  
Sbjct:  344 VVQEHLQGNRTPHTDPLSRGVVSGLTLRHGRAHVFRAILEGISFGTRLIFDAMEANGYKPSEVVVAGGATRSDLWLQIHADVANVPFKRTKCADAPALGAAILAAVGAGCYATVADAARAMVHMEGVVHPRPEVHAQYARAYAAYKATYPALRRVIHRQGSEA-----------AFATSVDDADAATDETPVAKIAPSLLAADQGDLAGEVSRMIHDGADWLHVDIMDGHFVN 565          
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Match: A0A383W972_TETOB (Glycerol kinase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W972_TETOB)

HSP 1 Score: 228 bits (582), Expect = 1.910e-66
Identity = 137/236 (58.05%), Postives = 166/236 (70.34%), Query Frame = 1
Query:    1 VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVLEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVLERYRTVYPALKPVFR----DQGAGAPPXXXXXXXXXXXXXXXXXAEGETGAVVVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFA 696
            +C DHFQGNRTPYTD  SRG L GLTLKHG+ H+FR ++E+V  GTEL+LE MR+ GY P S+ +AGGAT S LWLQ HADV N+P+++T   +A  LG AILAAV  GL PDI SA RAMVHV   V PNPE HA+Y R    Y+ +YPALK V       Q      XXXXXXXXXXXXXXXXX     G+++  +++ SILAAD A+L+ EV  V AAGA+W+HVD+ D  FA
Sbjct:  344 LCCDHFQGNRTPYTDAASRGALVGLTLKHGKAHVFRAMMEAVAFGTELILENMRQGGYHPDSLTLAGGATKSDLWLQIHADVSNLPLRLTEVSDAPALGCAILAAVAAGLHPDIRSAVRAMVHVSRVVQPNPERHAEYARFYNAYKALYPALKTVRLAMEPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLLPAIISPSILAADFANLAQEVASVQAAGAEWVHVDMFDGSFA 579          
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Match: A0A2V0NZK0_9CHLO (Glycerol kinase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NZK0_9CHLO)

HSP 1 Score: 222 bits (566), Expect = 5.460e-64
Identity = 141/255 (55.29%), Postives = 165/255 (64.71%), Query Frame = 1
Query:    1 VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVLEAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVL-ERYRTVYPALKPVFRDQGAGA-------------PPXXXXXXXXXXXXXXXXXAEGETGAVVVG------------LVNASILAADMADLSGEVERVMAAGADWIHVDVVDN 687
            V LDHFQGNRTP+TDPLSRG L GLTLKH RGH+FR L+E+VC GTE VL AMR AG++PSS+ VAGGAT S LWLQ HADV N+P+ +T   +A  LG AILAAV  GL PD+P+A  AMV V  TV P+P  HA+Y R+  ERY  +YPALK +F      A               XXXXXXXXXXXXX    A    G V VG            +++ SILAAD A L  EV RV+A GADW+HVD+ D 
Sbjct:  344 VALDHFQGNRTPHTDPLSRGALVGLTLKHTRGHVFRALMEAVCFGTEAVLAAMRAAGFSPSSLTVAGGATKSDLWLQIHADVTNLPLHLTEVSDAPALGCAILAAVAAGLHPDVPAATAAMVRVARTVKPDPARHAEYARLFRERYVPLYPALKGLFHGDAPTAGGGXXXXXXXXXXXXXXXXXXXXXXXXXGRRLAAAAGGPVGVGGIPAPPGAPPRPIISPSILAADFAALGDEVARVLAGGADWVHVDMFDG 598          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18312.5685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTM6_ECTSI2.110e-13794.47Putative fusion of putative sugar/xylulosekinase a... [more]
A0A6H5K691_9PHAE2.750e-13696.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P6TT72_CHLSO2.170e-7654.96Glycerol kinase n=1 Tax=Chlorella sorokiniana TaxI... [more]
A0A835YTS4_9STRA1.330e-7454.88Glycerol kinase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A061SEI4_9CHLO1.250e-7254.98Glycerol kinase (Fragment) n=1 Tax=Tetraselmis sp.... [more]
A0A0D2NQU3_9CHLO1.020e-7153.50Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A2P6VDM7_9CHLO3.690e-6956.28Glycerol kinase n=1 Tax=Micractinium conductrix Ta... [more]
C1MQP7_MICPC1.100e-6650.21Glycerol kinase n=3 Tax=Micromonas pusilla TaxID=3... [more]
A0A383W972_TETOB1.910e-6658.05Glycerol kinase n=1 Tax=Tetradesmus obliquus TaxID... [more]
A0A2V0NZK0_9CHLO5.460e-6455.29Glycerol kinase n=1 Tax=Raphidocelis subcapitata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18312contigEcto-sp13_S_contig18312:17..3124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score405.2
Seed ortholog evalue2.1e-110
Seed eggNOG ortholog2880.D7FTM6
Preferred nameXK-RPE
Model size708
KEGG rclassRC00540
KEGG koko:K01783
KEGG ReactionR01529
KEGG Pathwayko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.ribulose-phosphate 3-epimerase activity
EggNOG OGsCOG0036@1,COG0554@1,KOG2517@2759,KOG3111@2759
Ec32 ortholog descriptionCarbohydrate kinase, FGGY, N-terminal
Ec32 orthologEc-06_008860.1
EC5.1.3.1
Cds size708
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462943.4675202-CDS-Ecto-sp13_S_contig18312:16..1041681462943.4675202-CDS-Ecto-sp13_S_contig18312:16..104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18312 17..104 +
1681462943.4786565-CDS-Ecto-sp13_S_contig18312:824..9671681462943.4786565-CDS-Ecto-sp13_S_contig18312:824..967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18312 825..967 +
1681462943.487235-CDS-Ecto-sp13_S_contig18312:1464..16171681462943.487235-CDS-Ecto-sp13_S_contig18312:1464..1617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18312 1465..1617 +
1681462943.4953828-CDS-Ecto-sp13_S_contig18312:2238..23311681462943.4953828-CDS-Ecto-sp13_S_contig18312:2238..2331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18312 2239..2331 +
1681462943.5086231-CDS-Ecto-sp13_S_contig18312:2893..31241681462943.5086231-CDS-Ecto-sp13_S_contig18312:2893..3124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18312 2894..3124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18312.5685.1prot_Ecto-sp13_S_contig18312.5685.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18312 17..3124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18312.5685.1

>prot_Ecto-sp13_S_contig18312.5685.1 ID=prot_Ecto-sp13_S_contig18312.5685.1|Name=mRNA_Ecto-sp13_S_contig18312.5685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp
VCLDHFQGNRTPYTDPLSRGVLAGLTLKHGRGHMFRGLIESVCLGTELVL
EAMRKAGYTPSSVAVAGGATNSRLWLQTHADVGNVPMKVTREREACVLGS
AILAAVGGGLFPDIPSAARAMVHVEGTVIPNPEAHAKYKRVLERYRTVYP
ALKPVFRDQGAGAPPTTVAGGVDESSGGGAAAAEGETGAVVVGLVNASIL
AADMADLSGEVERVMAAGADWIHVDVVDNVFAKVL*
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mRNA from alignment at Ecto-sp13_S_contig18312:17..3124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18312.5685.1 ID=mRNA_Ecto-sp13_S_contig18312.5685.1|Name=mRNA_Ecto-sp13_S_contig18312.5685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18312:17..3124+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGCTTGGATCACTTCCAGGGAAACCGCACCCCGTACACTGACCCGCT TTCGAGGGGGGTCCTCGCCGGCCTGACACTCAAGCACGGTACGCTGGGGA CGTGCGCTTTTGGCTCCGCATCGGTTCGTTTCGCTGCCGTGCTGTCTTTT TTTATATATGTATTTTTTTTGACATGTTACACAAGTCGAACACGAAACGG ATTGCCAGGCTGGACGCAGTAGTGGACAGGCCATGGATGGTGGCGTGATT TTCATGTGTATGGCAATTGTTTCTTGAAGGCGTCACGATGGTGATTAGAA TGTGTGTTTCCGCAGCAAGACATGGTGGTACGCACACCGATGGGTTTGTA GCTTTTTTGCCTTTTTTTTTGACCCGGTGGTGTCAACGGAGGACCGCTAC TGTGTATATGTAGGGCGGGAGTGAGTTGAGGTAGAAGACTCGCGGATTCA CTCACCTTCTGCACGCTTACACCCTGGTTAGCCCTCTCCAGTCGCGACGG GCCGGCGGCACGGTGGGCATGACACGGCTCGAGTCCCCCCCCCCCCTGTC CGGACCACCGGCCGCCGCCGTTGCCGTGAGCTTAGGGTTCTCGAGGTCCT CTTTCCACGATTAAGTTTGGGCTTGAGAGCGAGATTCTTACGGTCTCGTG TTTTCGTTTGCACCGTTGTTTTTTGTGTGCATCGACCGCGCTAACCGACT GACCAATTAACGGTGCCAGTCTCAGTGTGGCTAAAACCGGGACCCGCTTC TAATGCGTGAGTGTGTGTTTCGTCCTTTCGACCCCACCGCCATCCTTTCT TTTCTTAGGGAGAGGACACATGTTCCGCGGGTTGATCGAGTCGGTGTGCC TCGGGACCGAGCTGGTTTTGGAGGCGATGCGAAAGGCGGGGTACACGCCT TCCTCCGTGGCGGTAGCGGGGGGTGCGACAAATTCTCGTCTGTGGCTTCA GGTACAAGGGGTGGGATGGGGAAGCGCATGTTGTTGAGATGTTCCGCTGC TGCTGCTGCCGATGTTGATGCTGGTGCTGCTGATGATTCTGATGCTGATT CTGATGCTGCTGGTGCTGATGTTGATGCTGATGCTGATGCTGCTGATAGG TTTAGGATTGGCGTAAGCGTTTTCCCTCGCCGCCGTCGTTAATGTATGTG ATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGCCGCCTTTTTCGCC GTTGTCTCCCGCAGTCAGTGTTCGACGTACTTCAGTGCCCTCCCACACTC CAACACCGAAATACCAATGACGTTTATTATGACAAGATGTGACAACGGGC TAGTCTGGATCGGCGAAAAGCCGGCATACATATCGCTCCGTCCCGGCATT GTAGGGATGGAATGTCAATGGTCATACCAACTACGGCATGCGTTGACATG AGTACAACCGGTCTACATTCGACTTTTCTCTTACACCGGTGGCCCCAGAC ACACGCGGACGTGGGCAACGTCCCCATGAAGGTTACTAGGGAGAGGGAGG CGTGTGTGCTGGGCTCAGCGATCCTCGCCGCCGTCGGGGGGGGGCTGTTT CCGGACATCCCCTCCGCCGCCCGTGCCATGGTCCACGTCGAGGGAACAGT GGTGAGTTGTTGGCTGTTTTTCTTTTTTGTTTGTCAGCCGTCGAAAGAAC GCCGCCGAAAAGGGTTCGCCAACGGGCCTTTGTGCTGTCCGGGACAAAGA GAATGGGGCGATGTTGTAAAACTCGCACAACTCGGAGACGTTCTGGGTGT TTTTGTTGTTTTGGCCTTTGTTCGTTCCACGCTTTTTCTCGCATTGAAGA ATTTGACCACAGCCTTGTATGCATACCGACGTGGCATGTACACTAGGGCG ATGGCGCATTCTTCCATATGCAAAACCACGCCTCGCGTCTCTTCCTTGCG TGCGTAACAAACCCCGGAGTTACTAGGTGCTGCGCACGTCGATGGGTTGG CGGTGGAAGCACGTCTCCCTTTTTTGCTACCACATCTGGATGCTGCTGAA TAGAAATTCCGGGTGGGAGACCGACCAGCCGCGGCACCCTATCGTTCTTT ATTTCCTTCCTCCGTCCTTGTCACAGAAAGGAGCGCGGAAGCACGCAATG GTGCGTGCCGACCAGTTCCACCTCCTCCCATCCCCAGATGACCCCCGCAA CCCCGTCTTCCCCTTGTGTATGCGTGTGGATTGATTCTTTTGACGGCGCA CAACGGCGGCGGGAATAACAAGATCCCGAACCCCGAGGCACACGCCAAGT ACAAGCGGGTGCTGGAGCGGTATCGTACGGTGTACCCCGCGCTCAAGCCC GTCTTCCGCGACCAGGTTCGGCGCGTGGCGGGCTGCTCTTTGTGTACCCC CTGTCTTGTCGAAGGAGAAGCGTGTCTATTCCCTTTATCGTCGAACTAGA AAGCGTTTGTGATATATCTCATGTCGATGAAGCAACCGTCCCTGTACCCC CTATTGCCGAAAGAAAAATCGCAAGTGTTACCCTCTATTTTCGACGTGGA AAATACATCTGTACCCTCGCTTGACGAAGGGGAAAGAAGCGTATTCGCAC CCTCTACTGTCGGAAGGAACAAAATCGTGCATCATGTTGATACCCTGTTT TTGATGCGTGGATGTAGACATCTCACCCTCAAGCCCCGGCTCCACGATGG CCGGTATGTGGCAGCGGCCAGGCGCCCCTGGTTCTTCAGCTTTGCTTGTT CGCAATCGCATGTTGTCAAGGGAGGCGACGAAGACGTTGCGCTTGTATGT AGGTGCATTTCGCCTTTGTGTTGATTTTCTGGTCTGTTACAAAATGCTTT CTTGTCTCTCACCTCGTTCAAAATATCCCAACGATCTCCTCTGTTTTTGT TTTCCTTCCCTCTTGTGGTGCCGTCAGGGAGCAGGGGCCCCGCCGACGAC AGTAGCAGGGGGGGTGGATGAGTCTAGCGGTGGCGGTGCGGCTGCGGCGG AAGGGGAGACGGGGGCGGTGGTGGTAGGGCTGGTGAACGCGTCCATCCTT GCGGCGGATATGGCAGACCTGTCGGGAGAGGTCGAGAGGGTGATGGCGGC GGGGGCGGACTGGATTCACGTGGATGTCGTCGACAACGTATTCGCAAAGG TGCTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18312:17..3124+

>mRNA_Ecto-sp13_S_contig18312.5685.1 ID=mRNA_Ecto-sp13_S_contig18312.5685.1|Name=mRNA_Ecto-sp13_S_contig18312.5685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18312:17..3124+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGCTTGGATCACTTCCAGGGAAACCGCACCCCGTACACTGACCCGCT
TTCGAGGGGGGTCCTCGCCGGCCTGACACTCAAGCACGGGAGAGGACACA
TGTTCCGCGGGTTGATCGAGTCGGTGTGCCTCGGGACCGAGCTGGTTTTG
GAGGCGATGCGAAAGGCGGGGTACACGCCTTCCTCCGTGGCGGTAGCGGG
GGGTGCGACAAATTCTCGTCTGTGGCTTCAGACACACGCGGACGTGGGCA
ACGTCCCCATGAAGGTTACTAGGGAGAGGGAGGCGTGTGTGCTGGGCTCA
GCGATCCTCGCCGCCGTCGGGGGGGGGCTGTTTCCGGACATCCCCTCCGC
CGCCCGTGCCATGGTCCACGTCGAGGGAACAGTGATCCCGAACCCCGAGG
CACACGCCAAGTACAAGCGGGTGCTGGAGCGGTATCGTACGGTGTACCCC
GCGCTCAAGCCCGTCTTCCGCGACCAGGGAGCAGGGGCCCCGCCGACGAC
AGTAGCAGGGGGGGTGGATGAGTCTAGCGGTGGCGGTGCGGCTGCGGCGG
AAGGGGAGACGGGGGCGGTGGTGGTAGGGCTGGTGAACGCGTCCATCCTT
GCGGCGGATATGGCAGACCTGTCGGGAGAGGTCGAGAGGGTGATGGCGGC
GGGGGCGGACTGGATTCACGTGGATGTCGTCGACAACGTATTCGCAAAGG
TGCTGTAG
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