mRNA_Ecto-sp13_S_contig18310.5684.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18310.5684.1
Unique NamemRNA_Ecto-sp13_S_contig18310.5684.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18310.5684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18310contigEcto-sp13_S_contig18310:665..1528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size864
Hectar predicted targeting categorysignal peptide
Exons1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462943.4215357-UTR-Ecto-sp13_S_contig18310:664..6681681462943.4215357-UTR-Ecto-sp13_S_contig18310:664..668Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18310 665..668 +
1681462943.4419887-UTR-Ecto-sp13_S_contig18310:1115..15281681462943.4419887-UTR-Ecto-sp13_S_contig18310:1115..1528Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18310 1116..1528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462943.4333723-CDS-Ecto-sp13_S_contig18310:668..11151681462943.4333723-CDS-Ecto-sp13_S_contig18310:668..1115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18310 669..1115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18310.5684.1prot_Ecto-sp13_S_contig18310.5684.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18310 669..1115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18310.5684.1

>prot_Ecto-sp13_S_contig18310.5684.1 ID=prot_Ecto-sp13_S_contig18310.5684.1|Name=mRNA_Ecto-sp13_S_contig18310.5684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MVTASVRADPLLGRIRSWCNMMAFLLCVCLHVATVVGPGGSGGGGNICQG
YRTQGTCGPIFFFCAYISMRGSTFAVQFRCNGHEVHDTIFQVDPGLFRTC
RLGFVTWCVFLVFSPLRCIDTMVLAAVPKGGRCLGILLCQRQSCIDCG*
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mRNA from alignment at Ecto-sp13_S_contig18310:665..1528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18310.5684.1 ID=mRNA_Ecto-sp13_S_contig18310.5684.1|Name=mRNA_Ecto-sp13_S_contig18310.5684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18310:665..1528+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAATGGTGACTGCCTCTGTCCGTGCGGATCCGCTGCTCGGTCGGATCC
GCTCTTGGTGTAACATGATGGCTTTCTTGTTATGTGTTTGTTTGCATGTA
GCTACCGTTGTCGGCCCGGGCGGAAGTGGCGGCGGTGGTAATATCTGTCA
AGGCTACCGAACACAGGGCACTTGTGGTCCAATTTTTTTTTTTTGTGCAT
ATATCAGTATGAGGGGATCGACGTTTGCTGTTCAATTTCGATGCAACGGC
CATGAAGTGCATGATACGATCTTCCAAGTGGACCCTGGCCTCTTCAGGAC
ATGCCGGCTGGGTTTTGTGACATGGTGTGTTTTTCTTGTGTTTTCCCCTC
TGAGGTGCATTGACACTATGGTCCTTGCTGCCGTACCAAAGGGCGGCCGA
TGTTTGGGCATTTTACTCTGTCAAAGACAATCATGTATTGACTGCGGATG
ATGTGCACGGAGCACGGGGCGGGCGTGTTTGTAGATTCGTGTTGGTCGGC
GCTTGAACCAACATCGCCAGACTTACATATATCTGCTGTGATGTCCGTTG
CCGGCATGATCTACACGCACAGAATGTAAAGTGCACCCAAGCATACGAAC
ACACACCGTGGTCTAGTGGGTACCCTCGCAGCCCACTGAGGACCAGGCCA
TGGATTCTTTTCCCGGCATATTTACATTTTTCCTCACGGAAATAAATCCT
GGTCTAAGGTGGAAGCGACGAGCTGCAAAGCTCGTTGTTCGTGAACTTGA
TCGATTTCACAAGTCGCGAGGGATAAAAATATCTCAGGCAGGAACCGCAG
GAGGGGGTCCAGCCCCCCCTCCCATGTGACCCCGGTTGGGTCGTTTAGGT
TAGTAGAAGTGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18310:665..1528+

>mRNA_Ecto-sp13_S_contig18310.5684.1 ID=mRNA_Ecto-sp13_S_contig18310.5684.1|Name=mRNA_Ecto-sp13_S_contig18310.5684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18310:665..1528+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGACTGCCTCTGTCCGTGCGGATCCGCTGCTCGGTCGGATCCGCTC
TTGGTGTAACATGATGGCTTTCTTGTTATGTGTTTGTTTGCATGTAGCTA
CCGTTGTCGGCCCGGGCGGAAGTGGCGGCGGTGGTAATATCTGTCAAGGC
TACCGAACACAGGGCACTTGTGGTCCAATTTTTTTTTTTTGTGCATATAT
CAGTATGAGGGGATCGACGTTTGCTGTTCAATTTCGATGCAACGGCCATG
AAGTGCATGATACGATCTTCCAAGTGGACCCTGGCCTCTTCAGGACATGC
CGGCTGGGTTTTGTGACATGGTGTGTTTTTCTTGTGTTTTCCCCTCTGAG
GTGCATTGACACTATGGTCCTTGCTGCCGTACCAAAGGGCGGCCGATGTT
TGGGCATTTTACTCTGTCAAAGACAATCATGTATTGACTGCGGATGA
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