mRNA_Ecto-sp13_S_contig18304.5682.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18304.5682.1
Unique NamemRNA_Ecto-sp13_S_contig18304.5682.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18304.5682.1 vs. uniprot
Match: D7FSD7_ECTSI (Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD7_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 1.960e-153
Identity = 250/319 (78.37%), Postives = 254/319 (79.62%), Query Frame = 1 
Query:    1 MLAAISWCWTASASPRRRKPMAAAGGPTAGENPSPALALLLACIALLSTRSEARTGGLSPGVGQAPCVRLFHASGDVGCRTRGREGVAGPLLLVDSERALQDIEARGLSSFRKDAQREE-GLLPQEASPEAMEGMGDGLMAVLPDAFFNRAILHRLSATGLLGGVLVLESAGGGRAAAS------QGDVVRRNPDVKTPQ------------------------GNSTPSAAFDVDASYPWNSRGDGLLMESFDFPMVLVAGGSSDDVRARAVSNGNVGGASWRYPLHKARMAFYFGGSAMDLNSQECLGWTDINGDRS 864
            MLAA+SWCWTASA PRR                       LACIALLSTRSEA TGG SPG+G APCVRLFHASGDVGCRTRGREGVAGPL LVDSERALQDIEARGLSSFRKDAQREE GLLPQE S EAMEGMGDGLMAVLPDAFFNR ILHRLSATGLLGGVLVLESAGGGRAAAS      QG+VVR NPDVKTPQ                        G+STPSAAFDVDASYPWNS GDGLLMESFDFPMVLVAGGSSDDVRARAVSNGNVGG SWRYPLHKARMAFYFGGSAMDLNSQECLGWTDINGDRS
Sbjct:    1 MLAAVSWCWTASAGPRRXXXXXXXXXXXXXXXXXXXXXXXLACIALLSTRSEAWTGGFSPGLGHAPCVRLFHASGDVGCRTRGREGVAGPLFLVDSERALQDIEARGLSSFRKDAQREEEGLLPQEGSAEAMEGMGDGLMAVLPDAFFNRTILHRLSATGLLGGVLVLESAGGGRAAASPAHSLAQGNVVRSNPDVKTPQLTCSAFKELSCKAGRLSFFERTEEGDSTPSAAFDVDASYPWNSGGDGLLMESFDFPMVLVAGGSSDDVRARAVSNGNVGGPSWRYPLHKARMAFYFGGSAMDLNSQECLGWTDINGDRS 319
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18304.5682.1 vs. uniprot
Match: A0A4D9CV36_9STRA (Nicastrin n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV36_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.570e-29
Identity = 97/243 (39.92%), Postives = 119/243 (48.97%), Query Frame = 1 
Query:  169 GLSPGVGQAPCVRLFHASGDVGCRTRGREGVAGPLLLVDSERALQDIEARGLSSFRKDAQREEGLLPQEASPEAMEGMGDGLMAVLPDAFFNRAILHRLSATG--LLGGVLVLESAGGGRAAASQGDVVRRNPDVKTPQGNSTPSAAFDVDASYPWNSRGDGLLMESFDFPMVL--VAGGSSD----DVRARAVSNGNVGGASWRYPLHKARMAFYFGGSAM------DLNSQECLGWTDING 855
            GL   V QAPCVRLF + G VGCRTR REG   PL                LS F +D Q E               + +G+  V+P +  N  +L  L A       GV+VLE +    AA  + D V  +PDV TPQG+STPSAAF V   + WN RG GLL +  DFP+VL  V G SS      V+  A  NG +G      P +KA+  FYFG  A       DL S +CL W D+ G
Sbjct:   36 GLLKEVTQAPCVRLFSSQGTVGCRTRSREGATAPLYY--------------LSGFGEDDQHE------------YVNLEEGVAVVMPASMLNSTVLEFLKAQSPARTRGVIVLEESKD-MAADFERDSV--SPDVSTPQGDSTPSAAFTVGPDHAWNPRGSGLLNQKHDFPVVLASVDGDSSGVGAAQVKTWAQHNGGLGAGP--LPRYKAKFDFYFGPDAPSTRAEPDLTSADCLSWRDVAG 247
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18304.5682.1 vs. uniprot
Match: A0A835YYT6_9STRA (Nicastrin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.970e-16
Identity = 72/220 (32.73%), Postives = 99/220 (45.00%), Query Frame = 1 
Query:  208 LFHASGDVGCRTRGREGVAGPLLLVDSERALQDIEARGLSSFRKDAQREEGLLPQEASPEAMEGMG-DGLMAVLPDAFFNRAILHRLSATGLLGGVLVLESAGGGRAAASQGDVVRRNPDVKTPQGNSTPSAAFDV-DASYPWNSRGDGLLMESFDFPMVLVAGGSSDDVRARAVSNGNVGGASWRYPLHKARMAFYFGGSAMDLNSQECLGWTDINGDR 861
            +FH+ GD+GCR   R   A PLL V S+  L+        SF  DA                 G G + + A +P   F  A++ +L  TG+LGG+LV+++     A AS                    +AAF   D    WN+ G  LL  S DFP+VL++G          VSN   G  S  +P + A   FYFG  A  ++S+ECL W D +G R
Sbjct:    1 MFHSGGDIGCRLPERGKQAFPLLSVASQLELE--------SFAADA----------------AGFGKEKVAAAVPATMFTAAVVSQLEGTGVLGGLLVVDTPPPDTAKAS--------------------AAAFSPEDRREGWNAHGSALLRRSLDFPVVLLSGEGGQGALEAGVSNRAHGLGS--FPRYMAEFEFYFG--AASISSKECLQWVDKDGAR 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18304.5682.1 vs. uniprot
Match: A0A662XXH7_9STRA (PEROXIDASE_4 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXH7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.580e-9
Identity = 78/260 (30.00%), Postives = 122/260 (46.92%), Query Frame = 1 
Query:  115 LLLACIALLS--TRSEARTGGLSPGVGQA--PCVRLFHASGDVGCRTRGREGVAGPLLLVDSERA-LQDIEARG-LSSFRKDAQREEGLLPQEASPEAMEGMGDGLMAVLPDAFFNRAILHRLSATGLLGGVLVLESAGGGRAAASQGDVVRRNPDVKTPQGNSTPSAAFD--VDASYPWNSRGDGLLMESFDFPMVLVAGGSS-DDVRARAVSNGNVG-GASWRYPLHKARMAFYFGGSAMDLNSQECLGWTDINGDRS 864
            L+ A +ALLS   R+ A T G    +      CVRLFH++GDVGCR+           L DS+ A L  I +   L+SF          +  EA  +  +      + V+ +   + A +   +    +GG+ +   A          D    + D  TPQG+ T   A +    A   WN  G+GLL +S  FP+V++   ++ ++   RA  N   G GA++     KA M +YFG +  ++NS +CL +T+I G+RS
Sbjct:  375 LVPAALALLSRDVRASAVTAGAPEHLVTTGGECVRLFHSTGDVGCRS-----------LTDSDMASLYPISSSDELASF----------VAGEADQQDADSK---YVLVMAEPLLSYAAIS--AGLDRIGGLFLFPEA----------DKKNVSFDSATPQGDGTVDGALNPFASAKTEWNPTGNGLLAKSLPFPVVMLENATTGEEFTKRAQMNVKAGVGATY-----KAFMNYYFGPT--EMNSLDCLAFTNIYGNRS 591
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18304.5682.1 vs. uniprot
Match: A0A662YIE6_9STRA (Nicastrin n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YIE6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.850e-8
Identity = 67/228 (29.39%), Postives = 104/228 (45.61%), Query Frame = 1 
Query:  199 CVRLFHASGDVGCRTRGREGVAGPLLLVDSERA-LQDIEARG-LSSFRKDAQREEGLLPQEASPEAMEGMGDGLMAVLPDAFFNRAILHRLSATGLLGGVLVLESAGGGRAAASQGDVVRRNPDVKTPQGNSTPSAAFD--VDASYPWNSRGDGLLMESFDFPMVLVAGGSS-DDVRARAVSNGNVG-GASWRYPLHKARMAFYFGGSAMDLNSQECLGWTDINGDRS 864
            CVRLFH++GDVGCR+           L DS+ A L  I +   L+SF              A     +      + V+ +   + A +   +    +GG+ +   A          D    + D  TPQG+ T   A +    A   WN  G+GLL +S  FP+V++   ++ ++   RA  N   G GA++     KA M +YFG +  ++NS +CL +T+I G RS
Sbjct:   41 CVRLFHSTGDVGCRS-----------LTDSDMASLYPISSSDELASF-------------VAGKADQQDADSKYVLVMAEPLLSYAAIS--AGLDRIGGLFLFPEA----------DKKNVSFDSVTPQGDGTVDGALNPFTSAKTEWNPTGNGLLAKSLPFPVVMLENATTGEEFTKRAQMNVKAGVGATY-----KAFMNYYFGPT--EMNSLDCLAFTNIYGSRS 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18304.5682.1 vs. uniprot
Match: A0A5D6XV32_9STRA (Nicastrin n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV32_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 9.290e-8
Identity = 67/225 (29.78%), Postives = 92/225 (40.89%), Query Frame = 1 
Query:  199 CVRLFHASGDVGCRTRGREGVAGPLLLVDSERALQDIEARGLSSFRKDAQREEGLLPQEASPEAMEGMGDGLMAVLPDAFFNRAILHRLSATGLLGGVLVLESAGGGRAAASQGDVVRRNPDVKTPQGNSTPSAAFD--VDASYPWNSRGDGLLMESFDFPMVLVAGGS-SDDVRARAVSNGNVGGASWRYPLHKARMAFYFGGSAMDLNSQECLGWTDINGDRS 864
            CVRLFH+SG VGCR+     +A PL  + S        A  L+ F   A              A +  G+    VLP+A    A      A   + G+ V        + A+            TPQG  T   A +   D    WN  G GLL     FP+VL+   + +    ARA +N   G  +     +KA M +YFG + MD  S+ CL + +I G  S
Sbjct:   43 CVRLFHSSGAVGCRSLSDADMA-PLFPIAS--------AEELARFASGA-------------AARQDSGEKYALVLPEALLGAAAFE--PALARVAGLFVYPDGANATSFAAA-----------TPQGAGTVDGALNPFADRKVAWNPAGTGLLDRQLPFPVVLLQDAAVAAQFVARAQTNVQAGAGA----TYKAFMKYYFGPAEMD--SRRCLAFQNIYGQDS 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18304.5682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FSD7_ECTSI1.960e-15378.37Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A4D9CV36_9STRA3.570e-2939.92Nicastrin n=3 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
A0A835YYT6_9STRA3.970e-1632.73Nicastrin n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A662XXH7_9STRA8.580e-930.00PEROXIDASE_4 domain-containing protein (Fragment) ... [more]
A0A662YIE6_9STRA3.850e-829.39Nicastrin n=1 Tax=Nothophytophthora sp. Chile5 Tax... [more]
A0A5D6XV32_9STRA9.290e-829.78Nicastrin n=1 Tax=Pythium brassicum TaxID=1485010 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18304contigEcto-sp13_S_contig18304:3..3511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score460.7
Seed ortholog evalue5.1e-127
Seed eggNOG ortholog2880.D7FSD7
Preferred nameNCSTN
Model size864
KEGG koko:K06171
KEGG Pathwayko04330,ko05010,map04330,map05010
KEGG ModuleM00682
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001775,GO:0002252,GO:0002262,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005886,GO:0005887,GO:0006508,GO:0006509,GO:0006518,GO:0006807,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006955,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007220,GO:0007267,GO:0007275,GO:0007389,GO:0007399,GO:0007423,GO:0007610,GO:0008150,GO:0008152,GO:0008233,GO:0008283,GO:0008594,GO:0009653,GO:0009790,GO:0009887,GO:0009987,GO:0010467,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016485,GO:0016787,GO:0018991,GO:0019098,GO:0019538,GO:0022008,GO:0022414,GO:0022603,GO:0023052,GO:0030141,GO:0030154,GO:0030182,GO:0030587,GO:0030659,GO:0030667,GO:0031090,GO:0031154,GO:0031224,GO:0031226,GO:0031293,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032943,GO:0032989,GO:0032991,GO:0033619,GO:0034205,GO:0034641,GO:0035295,GO:0035333,GO:0035577,GO:0036230,GO:0042051,GO:0042098,GO:0042110,GO:0042119,GO:0042461,GO:0042462,GO:0042478,GO:0042582,GO:0042592,GO:0042982,GO:0042987,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043603,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044671,GO:0045055,GO:0045165,GO:0045168,GO:0045314,GO:0045321,GO:0045463,GO:0045465,GO:0045595,GO:0045664,GO:0046331,GO:0046530,GO:0046532,GO:0046649,GO:0046651,GO:0046903,GO:0048468,GO:0048513,GO:0048565,GO:0048592,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048837,GO:0048856,GO:0048869,GO:0048872,GO:0050435,GO:0050673,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051604,GO:0051703,GO:0051704,GO:0051716,GO:0051960,GO:0055037,GO:0055123,GO:0060284,GO:0060465,GO:0060581,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070661,GO:0070765,GO:0071704,GO:0071840,GO:0071944,GO:0090596,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099503,GO:0140096,GO:1901564,GO:2000026,GO:2000027
Exons6
EggNOG free text desc.Notch signaling pathway
EggNOG OGsKOG2657@1,KOG2657@2759
Ec32 ortholog descriptionNicastrin
Ec32 orthologEc-25_001010.1
Cds size864
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18304.5682.1prot_Ecto-sp13_S_contig18304.5682.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18304 3..3511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462943.152834-CDS-Ecto-sp13_S_contig18304:2..601681462943.152834-CDS-Ecto-sp13_S_contig18304:2..60Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18304 3..60 +
1681462943.1653383-CDS-Ecto-sp13_S_contig18304:855..11091681462943.1653383-CDS-Ecto-sp13_S_contig18304:855..1109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18304 856..1109 +
1681462943.1751754-CDS-Ecto-sp13_S_contig18304:1382..16491681462943.1751754-CDS-Ecto-sp13_S_contig18304:1382..1649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18304 1383..1649 +
1681462943.1834238-CDS-Ecto-sp13_S_contig18304:2456..26191681462943.1834238-CDS-Ecto-sp13_S_contig18304:2456..2619Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18304 2457..2619 +
1681462943.191671-CDS-Ecto-sp13_S_contig18304:3068..31511681462943.191671-CDS-Ecto-sp13_S_contig18304:3068..3151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18304 3069..3151 +
1681462943.2017965-CDS-Ecto-sp13_S_contig18304:3472..35111681462943.2017965-CDS-Ecto-sp13_S_contig18304:3472..3511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18304 3473..3511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18304.5682.1

>prot_Ecto-sp13_S_contig18304.5682.1 ID=prot_Ecto-sp13_S_contig18304.5682.1|Name=mRNA_Ecto-sp13_S_contig18304.5682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp
MLAAISWCWTASASPRRRKPMAAAGGPTAGENPSPALALLLACIALLSTR
SEARTGGLSPGVGQAPCVRLFHASGDVGCRTRGREGVAGPLLLVDSERAL
QDIEARGLSSFRKDAQREEGLLPQEASPEAMEGMGDGLMAVLPDAFFNRA
ILHRLSATGLLGGVLVLESAGGGRAAASQGDVVRRNPDVKTPQGNSTPSA
AFDVDASYPWNSRGDGLLMESFDFPMVLVAGGSSDDVRARAVSNGNVGGA
SWRYPLHKARMAFYFGGSAMDLNSQECLGWTDINGDRS
back to top

mRNA from alignment at Ecto-sp13_S_contig18304:3..3511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18304.5682.1 ID=mRNA_Ecto-sp13_S_contig18304.5682.1|Name=mRNA_Ecto-sp13_S_contig18304.5682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3509bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18304:3..3511+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGCCGCAATTTCGTGGTGTTGGACTGCTTCGGCAAGCCCCAGGAG
AAGAAAACGTGAGACATGACGGCTGTGATCAATTGCTGCGAGGTGGAAGT
TGATTCTCCCCGATATTTGGTCGTTCACAGTAGACAAGTACAGGGGATGT
ATTGTAAAATGTAGGTTACCTTTCAGATATTTTTGTACTTCGCACCGGCA
GCTGGCATCACTGATATCAATCATCAGTGTATGGCTTTAAAAAGACTCGA
AATAAGTCCAGTACCCAGCCAGTTTTCCTCCACTCACTGAGAAGACTCCA
CCACATCCCGTTCGACAGTGGGTTTATCTTGAACGGATTTTCTCTCTGTG
CGTGTACCATATTTGTTTTACCTGAAGTTGATGTGCTCTCCCTGCTCCTG
CTTGTACATGGACTACCATTCCAAAGTGGAGTGAAAGCAGTCGAGAATAG
TACTGTAGCTGCTGCTGCTCACCGGTTGATGACTGGTCGCTCTACCCCTA
GCACGCAACGTCGACTGCTCGCAAAGGATATCGCTTGTGGTACAACGAGC
ACGCAGCAGGTACATTCTCGCACACTCATCAGCGAACCTTGCAGACACAA
ACATTGCTCAACGCCAGGAACGCAGGAAGGTGGCCAACACGTCAGATGTT
TCCCCCCACCCATTCAGCACAACCAAACTATGATTCAGGAGACAAAACCT
CGAAAAAATCGTGCATGGCGATAAAACCAGAGAGGGAAACACGCGTTCGG
CCACTGCCGCGGCGCACCTTCCGACACAGCTCGCAAGTCGGTATCAACGT
CAACATCACACGTGTTCGCCTTTCCCTACCCTGACCCTCGCGGTTTTCTC
CAGCAATGGCGGCAGCAGGAGGGCCTACCGCTGGGGAGAACCCTTCCCCC
GCCCTCGCCCTGCTCCTTGCATGTATCGCGTTGTTATCAACCCGGTCGGA
GGCTCGGACGGGGGGGCTTTCGCCCGGCGTGGGTCAAGCGCCGTGCGTCC
GCCTGTTTCACGCTTCGGGAGACGTCGGCTGTCGGACTCGGGGCCGGGAA
GGGGTCGCGGGGCCCCTGCTGCTGGTTGACAGCGAGAGAGCGCTGCAAGA
CATTGAGGTAAATAGTAGTGGTTGTTTTGCTGGTGATGTTGGTATTGAAG
TTTGTCGTTCGTAGGGGTTGGCTTTTGGTTGTGATGCGAAGTTCGAACAA
GCTTGCGGACGCAAAACGACAACATCGAGATGAAGATACTCGTCCAACAA
ACATCTAAATAGCTCTCTTTTAGCTCTCCACCGTAGAATGGCCCTACGCA
AAAGGCTGATTCCGCCCTGACGTTGCCCGTCCTCCGACAGCCCTACCTTT
TCCATCAAACCCGATCCCCTTGTTTTCAAGGCGCGGGGTCTCTCGAGTTT
CCGCAAGGACGCCCAACGCGAAGAAGGTCTCCTTCCACAAGAGGCGTCGC
CAGAGGCGATGGAAGGGATGGGGGACGGGCTGATGGCGGTGCTACCGGAT
GCGTTTTTCAACCGGGCTATCCTGCACCGGCTGTCCGCAACGGGCTTGCT
GGGCGGGGTGCTGGTGCTGGAATCGGCCGGTGGTGGTCGTGCGGCGGCGT
CGCAAGGAGACGTGGTGCGCAGAAATCCAGACGTGAAGACCCCTCAGGTA
TGGCCGCATGACGTTGCCGTTTTGACGTTGCGGCGGCTGTAATACTTTGC
GTACACCATTCGGTTTCTTCGATTTCTAGAAGCGTGTACCCGTGTTTGAG
TAGTTGGTCTGTGGCCACGGAAAGCGTCAGCGCCAGTTAGACGATTACCG
ATGTGAGGAGGTACCGAACGGAGATCGGAATGTTTTTTTTTGTGAAGACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACGATATCCAG
CGCTGCGCCCAGGTGTTGTCTGTGTTTTCTCCTGTAGGTTTATGGTACTG
ACGAAAACCCTTTGCTCCGACACGATCAGTAACGGGGAAAGACCGGGCTT
TTCGGCGTCCGGTGTGTAGAAACGCCCGTGCCCTCCCCGATTTTCCTGCG
AGTAGTCGCGGGATGTGAAGCCGGTGGGGTGTTATCAGTCGACCTGCTCG
GCTCTGAAGAAGTTGTCGTCGAACGCTGGAAGACATTTATTCTTCGAGCG
GACGGAGGAGGTGCGCTGTGAAAGCCCTGTGCCGTAGAAAACATGACGCA
ATCTACCACACCCCCTGGACCGATTTTCAAATGCTCGATTACTCCAAGAC
GACTAGGGTGCATACATAAAACTACCATTTTGGTTTGCTTCAGAAAACTT
GCGCTTCTGGTTCATCCTTGTACAACCTACCCTGGGCCCGCAAAATTGCT
CGGTCCCGGGATTGCAGGGATACGACTTCATTGGTCTGTAACGAGTACGG
TATGCCTTTTCATGAGTACGCCCCCAACCCTTTCGCGTGCGGTGGAATTC
GTAGGGGAATTCTACCCCCTCGGCGGCCTTCGACGTGGACGCCTCATACC
CGTGGAACTCCAGAGGAGACGGGCTGTTGATGGAATCATTCGATTTCCCG
ATGGTGCTGGTGGCGGGGGGTAGCTCCGACGACGTTCGAGCTCGTGCCGT
GTCGAACGGCAACGTGGGTGAGTGGGCGGTAGGGACCGCAATCACGTTGC
AACCTTTTTTTTGGCGTGTGACGGGTCACGATCGCACTGGAATTGGTGTC
GGCGCAGGCGAGATTGATGAGATGGCGACCACCCCGCCAAGGAAAACCCG
AGGTCAATGACCTTGTCGGTCCTTGAGCTTCGGGAGGGCTATTGACAGCT
GTTTCCGGCCTGACCGTGCTGCTGCTTCCAGTGCTTTTCCCCCCGTTGAG
AAATGTTCTTTTCTGTCAGAGCCGGCCTCCGGATTTTGTTTGTTTCAAAC
GTTTTTCGCAGTTTGTCACACACACACACACACACACACAGAGACCCCTC
TGCCCACGCACGCTCGCGGCCGGCACCACACGTACCTTCGTTGCACGGCA
ACTTGCCTCTGTCTATGGTTGACATGGTGCTGTTTGTCCCTTCGTCTCGT
TGCCTTTCGTTTTCAGGGGGAGCTAGCTGGCGTTACCCCTTGCACAAGGC
ACGGATGGCGTTTTACTTTGGCGGGTCAGCGATGGACCTCAACAGCCAGG
TGTACTTACATGTTAGCTCTGTTTTTGTGTGTTGTTGCTTGTACTGTTGG
TGTGTGTGTTTTCCATAGGAGCGGGTTTGGTCTAAAGATTGATTTCAGCC
GCGTGCTGTGTTGTTGGAACTCCTTGCCTGTGTTTTGTGGCCTTTGGGTG
TCGCTTCTCGACCACGGTGATCAGTGCGGGAATTGCCGATGCGCGGCGAA
GACGTGACGACAGCAGCTCCCGCATCAACACTAACGTTAACAACGACTAC
CCACGCTTACAAGATGTAACACTGAGAACAAACAACAACCGCCGCGCTTA
AACAACGACGTAACCCTCAGGAGTGTCTGGGGTGGACGGACATCAACGGC
GACAGATCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18304:3..3511+

>mRNA_Ecto-sp13_S_contig18304.5682.1 ID=mRNA_Ecto-sp13_S_contig18304.5682.1|Name=mRNA_Ecto-sp13_S_contig18304.5682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18304:3..3511+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGCCGCAATTTCGTGGTGTTGGACTGCTTCGGCAAGCCCCAGGAG
AAGAAAACCAATGGCGGCAGCAGGAGGGCCTACCGCTGGGGAGAACCCTT
CCCCCGCCCTCGCCCTGCTCCTTGCATGTATCGCGTTGTTATCAACCCGG
TCGGAGGCTCGGACGGGGGGGCTTTCGCCCGGCGTGGGTCAAGCGCCGTG
CGTCCGCCTGTTTCACGCTTCGGGAGACGTCGGCTGTCGGACTCGGGGCC
GGGAAGGGGTCGCGGGGCCCCTGCTGCTGGTTGACAGCGAGAGAGCGCTG
CAAGACATTGAGGCGCGGGGTCTCTCGAGTTTCCGCAAGGACGCCCAACG
CGAAGAAGGTCTCCTTCCACAAGAGGCGTCGCCAGAGGCGATGGAAGGGA
TGGGGGACGGGCTGATGGCGGTGCTACCGGATGCGTTTTTCAACCGGGCT
ATCCTGCACCGGCTGTCCGCAACGGGCTTGCTGGGCGGGGTGCTGGTGCT
GGAATCGGCCGGTGGTGGTCGTGCGGCGGCGTCGCAAGGAGACGTGGTGC
GCAGAAATCCAGACGTGAAGACCCCTCAGGGGAATTCTACCCCCTCGGCG
GCCTTCGACGTGGACGCCTCATACCCGTGGAACTCCAGAGGAGACGGGCT
GTTGATGGAATCATTCGATTTCCCGATGGTGCTGGTGGCGGGGGGTAGCT
CCGACGACGTTCGAGCTCGTGCCGTGTCGAACGGCAACGTGGGGGGAGCT
AGCTGGCGTTACCCCTTGCACAAGGCACGGATGGCGTTTTACTTTGGCGG
GTCAGCGATGGACCTCAACAGCCAGGAGTGTCTGGGGTGGACGGACATCA
ACGGCGACAGATCC
back to top