mRNA_Ecto-sp13_S_contig18298.5675.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18298.5675.1
Unique NamemRNA_Ecto-sp13_S_contig18298.5675.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18298.5675.1 vs. uniprot
Match: D7G0S8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S8_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.770e-17
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 MRSGRRGGLRLHVGLAVCVWYP-LLRRHHTNEVPTVVFRTLPPEHSFPP 144
            M +G RGGLRLHVGLA CVWYP LL RH+  E PT+VFRTL  +HSFPP
Sbjct:    1 MGAGWRGGLRLHVGLAACVWYPFLLLRHYATEFPTIVFRTLAHQHSFPP 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18298.5675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0S8_ECTSI3.770e-1771.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18298contigEcto-sp13_S_contig18298:3015..3161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_001690.1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462942.134386-CDS-Ecto-sp13_S_contig18298:3014..31611681462942.134386-CDS-Ecto-sp13_S_contig18298:3014..3161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18298 3015..3161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18298.5675.1prot_Ecto-sp13_S_contig18298.5675.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18298 3015..3161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18298.5675.1

>prot_Ecto-sp13_S_contig18298.5675.1 ID=prot_Ecto-sp13_S_contig18298.5675.1|Name=mRNA_Ecto-sp13_S_contig18298.5675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
MRSGRRGGLRLHVGLAVCVWYPLLRRHHTNEVPTVVFRTLPPEHSFPP*
back to top

mRNA from alignment at Ecto-sp13_S_contig18298:3015..3161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18298.5675.1 ID=mRNA_Ecto-sp13_S_contig18298.5675.1|Name=mRNA_Ecto-sp13_S_contig18298.5675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18298:3015..3161+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGATCAGGGCGGCGCGGGGGCCTCCGCCTGCACGTTGGCCTGGCCGT
TTGCGTGTGGTATCCGTTGCTGCGTCGGCACCACACTAACGAGGTCCCAA
CCGTCGTGTTCCGCACCTTGCCTCCCGAACACTCATTCCCGCCGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18298:3015..3161+

>mRNA_Ecto-sp13_S_contig18298.5675.1 ID=mRNA_Ecto-sp13_S_contig18298.5675.1|Name=mRNA_Ecto-sp13_S_contig18298.5675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18298:3015..3161+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGATCAGGGCGGCGCGGGGGCCTCCGCCTGCACGTTGGCCTGGCCGT
TTGCGTGTGGTATCCGTTGCTGCGTCGGCACCACACTAACGAGGTCCCAA
CCGTCGTGTTCCGCACCTTGCCTCCCGAACACTCATTCCCGCCGTAG
back to top