mRNA_Ecto-sp13_S_contig18288.5673.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18288.5673.1
Unique NamemRNA_Ecto-sp13_S_contig18288.5673.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18288.5673.1 vs. uniprot
Match: D8LSM9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM9_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.670e-23
Identity = 57/69 (82.61%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   64 AAFPSRPLQRVELPPASESVARALVPGAAGGVGPVEEGVGADLPGEAGRARDAGARAGAARAILRPHPP 270
            AA P  P QR ELP ASESVARALVP AA GVGPVEEGVGAD PGEAGRARDAGA AGAA A+LRPHPP
Sbjct:   26 AALPVSPPQRFELPRASESVARALVPRAAVGVGPVEEGVGADPPGEAGRARDAGAGAGAAGAVLRPHPP 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18288.5673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM9_ECTSI2.670e-2382.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18288contigEcto-sp13_S_contig18288:3243..3512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size272
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.990099-CDS-Ecto-sp13_S_contig18288:3242..35121681462941.990099-CDS-Ecto-sp13_S_contig18288:3242..3512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18288 3243..3512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18288.5673.1prot_Ecto-sp13_S_contig18288.5673.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18288 3243..3512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18288.5673.1

>prot_Ecto-sp13_S_contig18288.5673.1 ID=prot_Ecto-sp13_S_contig18288.5673.1|Name=mRNA_Ecto-sp13_S_contig18288.5673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
PLEHAQVAPPRRLRARLLRPRAAFPSRPLQRVELPPASESVARALVPGAA
GGVGPVEEGVGADLPGEAGRARDAGARAGAARAILRPHPP
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mRNA from alignment at Ecto-sp13_S_contig18288:3243..3512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18288.5673.1 ID=mRNA_Ecto-sp13_S_contig18288.5673.1|Name=mRNA_Ecto-sp13_S_contig18288.5673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18288:3243..3512+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACTTGAGCACGCGCAGGTGGCCCCCCCTCGCCGCCTCCGCGCACGTCT
GCTGCGACCACGGGCAGCCTTCCCTTCGAGACCACTGCAGCGTGTCGAGC
TCCCCCCGGCGAGCGAGAGCGTTGCACGTGCCCTCGTCCCAGGGGCAGCC
GGTGGCGTGGGCCCAGTGGAGGAGGGCGTAGGGGCTGATCTGCCGGGCGA
GGCCGGCCGTGCGCGCGATGCCGGCGCTCGTGCGGGGGCTGCAAGGGCAA
TCCTTCGACCTCATCCACCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18288:3243..3512+

>mRNA_Ecto-sp13_S_contig18288.5673.1 ID=mRNA_Ecto-sp13_S_contig18288.5673.1|Name=mRNA_Ecto-sp13_S_contig18288.5673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18288:3243..3512+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACTTGAGCACGCGCAGGTGGCCCCCCCTCGCCGCCTCCGCGCACGTCT
GCTGCGACCACGGGCAGCCTTCCCTTCGAGACCACTGCAGCGTGTCGAGC
TCCCCCCGGCGAGCGAGAGCGTTGCACGTGCCCTCGTCCCAGGGGCAGCC
GGTGGCGTGGGCCCAGTGGAGGAGGGCGTAGGGGCTGATCTGCCGGGCGA
GGCCGGCCGTGCGCGCGATGCCGGCGCTCGTGCGGGGGCTGCAAGGGCAA
TCCTTCGACCTCATCCACCT
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