mRNA_Ecto-sp13_S_contig18286.5671.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18286.5671.1
Unique NamemRNA_Ecto-sp13_S_contig18286.5671.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Match: D8LBC1_ECTSI (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=D8LBC1_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 3.720e-97
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:    1 RKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 441
            RKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDE+ELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH
Sbjct:   11 RKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDEKELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Match: A0A836CIZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ7_9STRA)

HSP 1 Score: 258 bits (659), Expect = 6.760e-86
Identity = 128/147 (87.07%), Postives = 141/147 (95.92%), Query Frame = 1 
Query:    1 RKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 441
            RKT+KTPRRP+EKERLD ELKLCGEYGLRCKREIWRVQ+ALAKIRKAAR+LLTLD KDPKRLFEGPALLRRM+RFGLL E+E+ELDFVLQL+T+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHIRVGKQLVN+P F VR+DSEKH
Sbjct:   11 RKTYKTPRRPFEKERLDQELKLCGEYGLRCKREIWRVQYALAKIRKAARELLTLDAKDPKRLFEGPALLRRMARFGLLTEEEKELDFVLQLSTQKLLERRLQTKVFKQGLAKSIHHARVLIRQRHIRVGKQLVNIPSFTVRVDSEKH 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Match: A0A7S2V9P4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9P4_9STRA)

HSP 1 Score: 258 bits (658), Expect = 9.930e-86
Identity = 130/147 (88.44%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:    1 RKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 441
            RKT KTPRRPYEKERLD ELKLCGEYGLRCKREIWRVQ ALAKIRKAAR+LLTL+ KDP+RLFEGPALLRRMSR+GLL +DE+ELDFVLQL+T+K+LERRLQTKVFKQGLAKSIHHARVLIK RHIRVGKQLVNVP F+VRMDSEKH
Sbjct:   11 RKTSKTPRRPYEKERLDQELKLCGEYGLRCKREIWRVQLALAKIRKAARELLTLEPKDPRRLFEGPALLRRMSRYGLLMDDEKELDFVLQLSTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQLVNVPSFLVRMDSEKH 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Match: A0A7S2BVT2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVT2_9STRA)

HSP 1 Score: 251 bits (641), Expect = 3.860e-83
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 1 
Query:    7 TFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 441
            T KTPRR YEKERLD ELKLCGEYGLRCKREIWRVQ ALAKIRKAAR LLTLD KDPKRLFEGPALLR+M R+GLL E+E+ELDFVLQLTT+K+LERRLQTKVFKQGLAKSIHHARVLIK RHIRVGKQLVNVP F+VR+DSEKH
Sbjct:   13 TSKTPRRAYEKERLDQELKLCGEYGLRCKREIWRVQLALAKIRKAARDLLTLDVKDPKRLFEGPALLRKMVRYGLLSEEEKELDFVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQLVNVPSFLVRVDSEKH 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Match: A0A7S0TCI6_9STRA (Hypothetical protein n=2 Tax=Pelagophyceae TaxID=35675 RepID=A0A7S0TCI6_9STRA)

HSP 1 Score: 246 bits (628), Expect = 3.930e-81
Identity = 123/146 (84.25%), Postives = 136/146 (93.15%), Query Frame = 1 
Query:    4 KTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 441
            KT KTPRRP+EKER+D ELKLCGEYGLRCKRE+WRVQFALAKIRKAAR+LLTLD KDPKRLFEG ALLRRM+R+GLL E E +LD +LQ+TT+K+LERRLQTKVFKQGLAKSIHHARVLIK RHIRVGKQ+VNVP FMVR+DSEKH
Sbjct:   12 KTSKTPRRPFEKERIDGELKLCGEYGLRCKRELWRVQFALAKIRKAARELLTLDPKDPKRLFEGAALLRRMARYGLLDETELDLDAILQMTTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQVVNVPSFMVRVDSEKH 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Match: A0A6G0XI73_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI73_9STRA)

HSP 1 Score: 244 bits (624), Expect = 4.940e-80
Identity = 121/147 (82.31%), Postives = 135/147 (91.84%), Query Frame = 1 
Query:    1 RKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 441
            RKT++TP R +EKERLD E+KL GEYGLRCKREIWRVQ+ LAK+RKAARQLLTLD KDPKRLFEGPAL+RR+ RFGLL EDE ELDFVLQ+ T+K+LERRLQTKVFKQGLAKSIHHARVLIK RHIRVG+QLV+VP FMVR+DSEKH
Sbjct:   11 RKTYRTPSRAFEKERLDQEMKLLGEYGLRCKREIWRVQYTLAKLRKAARQLLTLDPKDPKRLFEGPALMRRLKRFGLLAEDENELDFVLQMNTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGRQLVDVPSFMVRLDSEKH 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Match: A0A7S1BHT3_9STRA (Hypothetical protein n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1BHT3_9STRA)

HSP 1 Score: 243 bits (620), Expect = 5.500e-80
Identity = 125/147 (85.03%), Postives = 134/147 (91.16%), Query Frame = 1 
Query:    1 RKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 441
            RKT KTPRRPYEKERLD+ELKL GEYGLRCKRE+WRVQFALAK+RKAAR LLTLD KDPKR+FEG ALLRRMSR+GLL EDE ELDFVLQL+T+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHIRVG QLVNVP F VR  SEKH
Sbjct:   11 RKTSKTPRRPYEKERLDAELKLVGEYGLRCKREVWRVQFALAKLRKAARTLLTLDPKDPKRVFEGEALLRRMSRYGLLNEDELELDFVLQLSTQKILERRLQTKVFKQGLAKSIHHARVLIRQRHIRVGGQLVNVPSFNVRTSSEKH 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Match: K0SZN6_THAOC (Uncharacterized protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0SZN6_THAOC)

HSP 1 Score: 243 bits (619), Expect = 7.550e-80
Identity = 124/147 (84.35%), Postives = 134/147 (91.16%), Query Frame = 1 
Query:    1 RKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 441
            RKT+KTPRRPYEKERLD+ELKL GEYGLRCKREIWRVQ+ALAK+RKAAR LLTLD KDPKR+FEG ALLRRMSR+GLL +DE ELDFVLQLTT+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHI VG QLVNVP F VR  SEKH
Sbjct:   11 RKTYKTPRRPYEKERLDAELKLVGEYGLRCKREIWRVQYALAKLRKAARVLLTLDPKDPKRIFEGAALLRRMSRYGLLADDELELDFVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIRQRHISVGGQLVNVPSFNVRTSSEKH 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Match: B8C1H2_THAPS (RS9, ribosomal protein 9 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1H2_THAPS)

HSP 1 Score: 242 bits (618), Expect = 1.070e-79
Identity = 124/147 (84.35%), Postives = 133/147 (90.48%), Query Frame = 1 
Query:    1 RKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 441
            RKT+KTPRRPYEKERLD+ELKL GEYGLRCKREIWR Q+ALAK+RKAAR LLTLD KDPKR+FEG ALLRRMSR+GLL EDE ELDFVLQLTT+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHI VG QLVNVP F VR  SEKH
Sbjct:   11 RKTYKTPRRPYEKERLDAELKLVGEYGLRCKREIWRCQYALAKLRKAARTLLTLDPKDPKRIFEGTALLRRMSRYGLLAEDELELDFVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIRQRHISVGGQLVNVPSFNVRTSSEKH 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Match: A0A7S2SP92_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP92_9STRA)

HSP 1 Score: 242 bits (618), Expect = 1.110e-79
Identity = 121/146 (82.88%), Postives = 136/146 (93.15%), Query Frame = 1 
Query:    4 KTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH 441
            KT KTPRRP+EKERLD ELKLCGEYGLRCKREIWRVQ ALAKIRKAAR+LLTLD KD KR+FEGPALLR+M+R+GLL ++E+ELDFVLQLTT+K+LERRLQT+VFK  LAKSIHHARVLIK RHI+VGKQLVNVP F+VR+DSEKH
Sbjct:   12 KTSKTPRRPFEKERLDQELKLCGEYGLRCKREIWRVQLALAKIRKAARELLTLDPKDAKRVFEGPALLRKMARYGLLTDEEKELDFVLQLTTQKLLERRLQTRVFKSHLAKSIHHARVLIKQRHIKVGKQLVNVPSFLVRVDSEKH 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18286.5671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC1_ECTSI3.720e-9799.32Uncharacterized protein n=3 Tax=Eukaryota TaxID=27... [more]
A0A836CIZ7_9STRA6.760e-8687.07Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A7S2V9P4_9STRA9.930e-8688.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BVT2_9STRA3.860e-8387.59Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0TCI6_9STRA3.930e-8184.25Hypothetical protein n=2 Tax=Pelagophyceae TaxID=3... [more]
A0A6G0XI73_9STRA4.940e-8082.31Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1BHT3_9STRA5.500e-8085.03Hypothetical protein n=5 Tax=Bacillariophyta TaxID... [more]
K0SZN6_THAOC7.550e-8084.35Uncharacterized protein n=8 Tax=Bacillariophyta Ta... [more]
B8C1H2_THAPS1.070e-7984.35RS9, ribosomal protein 9 n=1 Tax=Thalassiosira pse... [more]
A0A7S2SP92_9STRA1.110e-7982.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18286contigEcto-sp13_S_contig18286:753..3512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score292.4
Seed ortholog evalue1.2e-76
Seed eggNOG ortholog2880.D8LBC1
Preferred nameRPS9
Model size441
KEGG koko:K02997,ko:K17675
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006417,GO:0006450,GO:0008150,GO:0009506,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0019222,GO:0019843,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0042788,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071944,GO:0080090,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1990904,GO:2000112
Exons4
EggNOG free text desc.positive regulation of translational fidelity
EggNOG OGsCOG0522@1,KOG3301@2759
Ec32 ortholog descriptionRibosomal protein S4/S9, eukaryotic/archaeal
Ec32 orthologEc-27_004470.1
EC3.6.4.13
Cds size441
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.836175-CDS-Ecto-sp13_S_contig18286:752..8901681462941.836175-CDS-Ecto-sp13_S_contig18286:752..890Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18286 753..890 +
1681462941.8486896-CDS-Ecto-sp13_S_contig18286:2008..21821681462941.8486896-CDS-Ecto-sp13_S_contig18286:2008..2182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18286 2009..2182 +
1681462941.8584142-CDS-Ecto-sp13_S_contig18286:2944..30121681462941.8584142-CDS-Ecto-sp13_S_contig18286:2944..3012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18286 2945..3012 +
1681462941.867789-CDS-Ecto-sp13_S_contig18286:3451..35121681462941.867789-CDS-Ecto-sp13_S_contig18286:3451..3512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18286 3452..3512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18286.5671.1prot_Ecto-sp13_S_contig18286.5671.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18286 753..3512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18286.5671.1

>prot_Ecto-sp13_S_contig18286.5671.1 ID=prot_Ecto-sp13_S_contig18286.5671.1|Name=mRNA_Ecto-sp13_S_contig18286.5671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
RKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQ
LLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERR
LQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKH
back to top

mRNA from alignment at Ecto-sp13_S_contig18286:753..3512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18286.5671.1 ID=mRNA_Ecto-sp13_S_contig18286.5671.1|Name=mRNA_Ecto-sp13_S_contig18286.5671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2760bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18286:753..3512+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAAGACCTTCAAGACCCCCAGGCGGCCGTACGAGAAGGAACGCCTCGA
CTCGGAGCTCAAGCTATGCGGCGAGTACGGCCTCCGATGCAAGCGCGAGA
TCTGGCGTGTTCAGTTCGCGTTGGCCAAGATCCGTAAGGTGGGTTCTAGG
GCCAGGGCACGCGTGCCGTAGTGAGACTGGCGGAGCGAGCAGTTCATATC
GCGATCAGACGAAGACCGACTGGTTTTCCTGGTGTGCTCATCGGCAGTGT
AACCATCTCGTGTGTGGTGTTCTTAAGGCAAAGTGCCGGTGGTGTTTGCG
TCTGTTGGCTGTTCTGGTGTGCTGATGCAATTGCCCGGTATCTGAACGTT
GTTGTAGTGCATTTTGGCGCCAAGCAACAGAGAGTTGACTGCTGCTGGTG
GCACAGTCGGCATTTTCTCCCGAAAGTGTAGGCCATGAGTCAGAGAAGTG
TGGCGGACTGAGTGGGACGGGTATATTGGGTCGGCTGGTATCATAGGGTT
GTGAGTGGTCGTTCTCTTTACACGAGGGATATGCACACCCTTGAAGTGCC
TAGAACCCTGCGTGTTGCTGGGAGGCGGCAGCCCATGCGTTGCGGGTGCA
GGAGGGTGTTCAGCTGGTTTCGGGTGCAAATCCCATCCGTTGTTGAGAAC
GGCGTCGTGGCCAGTCGGACGTGTAAAACCTCGAATTTTGTGAAGCCTCG
TCCGTAAGGTCCAGCCCACAAGAGCACGGATTTATAGATCTCAGTTGAAC
ACAGAGGTCAGCGTAAGAAAATTTTTTCACAATAATGGGTGACTCGTAGC
AATGAAGAGCCATACCCTGTCCAGAGTCCATTCGGTGTACACAAGCATAC
GATTACAGCTAGGCTTGCCGGTGTTGTCTTTTCAACACAAGGCCGAGGTG
ACGTGCCATCAAGCGTCCCGTTTGTCTTCCTCACATATTTTTTCTAACTA
TGCTGTTGCTCGTGAACGGGTCCACGAGCGCGTGGATAACCAAGGCGAGG
CCCCACGCCGCCAGCATTGATGTATTAATCAGCGTGATTGTTTTCTCGCG
ACAGAGAAAGCGAGTTCAACTCCAAGCGAAAATGCTGGACATCCGACCTT
TTAAGATTTCGTCACCCTCTCATATCTTGTCAGGCAGGCAGTGATTGTGT
TGGCGAACGATACTAAATGACGCCGCCCTTTTCTCCTCATCTTTCTCGTC
ATGGCGTGGTTGTGTGGCGTAACATCCTGCTGATGCTCCTGCCGCCACTG
CTGTAGGCCGCGCGCCAGTTGCTGACGCTCGACACCAAGGACCCCAAGCG
CCTGTTCGAGGGCCCCGCCCTGCTGCGCCGCATGTCCCGGTTCGGTCTCC
TCGGCGAGGACGAGAGGGAACTCGACTTCGTGCTTCAGCTCACTACCGAG
AAGATGCTCGAGAGGAGGCTTCAGACCAAGGTGTGTCGTCGCTGTATGGT
GCTTTTTTTTTGTGGTCGAGTTGTCGTGTTCCGTGCCGTTGCGTTTGACA
TCTGTCAAAGATTGGTGTGTATTTCACTAGTGTGCGCTAGGCAGTGTGGT
TGTGTCTTGGGTGTTGCATTGGATGTGGTGGTTGTTTGGGTGCACCCGGT
GTCTGGCAGGATGTCTGACTACGGAAGCTTCCTTTTGGCCGTCATAGTCC
ACGTTACGTGTCGTGGCTACGGGCCCGATGAAGCTAAGGGTGGTGCAACC
ATGGTGGCCTACTTATAGATACGTGCGGCGCTCACCTTCGTGTGAGCTTC
AGACCATGACAAGGATGCCTTTTTTCGTTAAAGGCCAACAAGCGCAAGGG
TGGATAGTCGTTGTGGTTTAACCAGGCCGAACATTGGTGGAGCTATGCCT
GCACGCATGTCGTACCGTGTTTGCCATGGCCGTGACTCTGATTTGACGGG
TAGTGACGTCAACATTGTTGATCACTCTGTTTACAGGCGTGTGATGGCCG
ATTCCATGTTGGCGGGTCTTCCGCCACTTGGACACTGCTGAAACAAGGCC
CAATTGTGTGTTGTTTTGTCTTTGGGTAAATGTGTTCTGTAGTTGACGAA
ATGTTGATGAGATGCACGTCCTGTGACTCACAGGTGTTGCGTGGGTTACT
CGCTACGCCGTCTGGCATTTGGATGTCCTTGGAAAAAGTATGCGTCAGAC
ACCTCGTTGCCCGATTTTTCGGTCGCTCTCCAAATTCCCCAGGTGTTCAA
GCAGGGTCTGGCCAAGTCTATCCACCACGCCCGTGTGCTGATCAAGCACC
GCCACATCCGGTGAGTCCCATATGGTCAAGTTGTTGCATGGACAGGGAAA
TCCTTGTTCAGTATATGTACATCCGATGGTTGTCCCGTCGTGCGGCGTCC
GGTTCTGCGCCTCTCCCAGTTTGATCAAACAAACTAGCGAACACCAGCAT
CGTGTCTTTAATCTTTATGGTGCTCGAGTCAACCCCCTTTTTGGTCTCTG
ACAAGTCGGCAGTTGCCCGAGGTGCTTGGTCGTAATGTGTTCCAAGCCTG
TAGAAATAGGTATAACCTTGCAAAAATGTGGGATAGCATGCGTGCATTTG
TTCCACGACTGGCTGTGCTTTTTGAGAGGCTACACGGCCAAATCATTGAG
GTCATGTGCGGCCGATGCCGCGATACGGAATGCCCCGTTTTCATGCTCTA
CTCTTCTCATTCCTAGCCCTTCCCTCGCGATGATACTTGTTCCCAACAGC
GTGGGCAAGCAGCTCGTGAACGTGCCCCAGTTCATGGTCCGCATGGACTC
CGAGAAGCAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18286:753..3512+

>mRNA_Ecto-sp13_S_contig18286.5671.1 ID=mRNA_Ecto-sp13_S_contig18286.5671.1|Name=mRNA_Ecto-sp13_S_contig18286.5671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18286:753..3512+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAAGACCTTCAAGACCCCCAGGCGGCCGTACGAGAAGGAACGCCTCGA
CTCGGAGCTCAAGCTATGCGGCGAGTACGGCCTCCGATGCAAGCGCGAGA
TCTGGCGTGTTCAGTTCGCGTTGGCCAAGATCCGTAAGGCCGCGCGCCAG
TTGCTGACGCTCGACACCAAGGACCCCAAGCGCCTGTTCGAGGGCCCCGC
CCTGCTGCGCCGCATGTCCCGGTTCGGTCTCCTCGGCGAGGACGAGAGGG
AACTCGACTTCGTGCTTCAGCTCACTACCGAGAAGATGCTCGAGAGGAGG
CTTCAGACCAAGGTGTTCAAGCAGGGTCTGGCCAAGTCTATCCACCACGC
CCGTGTGCTGATCAAGCACCGCCACATCCGCGTGGGCAAGCAGCTCGTGA
ACGTGCCCCAGTTCATGGTCCGCATGGACTCCGAGAAGCAC
back to top