mRNA_Ecto-sp13_S_contig18285.5670.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18285.5670.1
Unique NamemRNA_Ecto-sp13_S_contig18285.5670.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Match: D8LS91_ECTSI (Glycine amidinotransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS91_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 6.730e-81
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 1 
Query:    1 MSKIDPTCIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLITV 366
            MSKIDP CIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKA+EELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLIT+
Sbjct:    1 MSKIDPACIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKASEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLITI 122
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BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Match: A0A485K2Z9_9STRA (Glycine amidinotransferase, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2Z9_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.050e-53
Identity = 86/118 (72.88%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:   13 DPTCIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLITV 366
            D +C+VNSH EWDPLEEVIVGRVD ATIPEWHVSGKAVWP+++W MYK  AG+SFP +LV  AA+ELD  S+VLE EGV VRRPE  P DF + V TPDF+SV QLYAAMPRDVLI V
Sbjct:   42 DTSCVVNSHNEWDPLEEVIVGRVDGATIPEWHVSGKAVWPSRYWDMYKTQAGQSFPADLVAAAAKELDYLSEVLEGEGVRVRRPEFNPDDFKKAVETPDFKSVGQLYAAMPRDVLIVV 159
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BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Match: A0A662X5V6_9STRA (Glycine amidinotransferase, mitochondrial n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5V6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.030e-50
Identity = 83/114 (72.81%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:   19 TCIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLI 360
            T I+NSH EWDPLEEVIVGRVD ATIPEWHV+GKAVWP K+W MYK  AG+ FP++L+  AA+ELD  ++VLE EGV VRRPEV  GDF++PV TPDF S SQLYAAMPRDVLI
Sbjct:   32 TPIINSHNEWDPLEEVIVGRVDGATIPEWHVAGKAVWPGKYWDMYKTKAGQPFPKDLMEGAAKELDYLAEVLEGEGVIVRRPEVNEGDFNQPVETPDFTSRSQLYAAMPRDVLI 145
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BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Match: H3G7S4_PHYRM (Glycine amidinotransferase, mitochondrial n=8 Tax=Phytophthora TaxID=4783 RepID=H3G7S4_PHYRM)

HSP 1 Score: 170 bits (431), Expect = 1.460e-49
Identity = 81/109 (74.31%), Postives = 91/109 (83.49%), Query Frame = 1 
Query:   34 SHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLI 360
            SH EWDPLEEVIVGRV+ ATIPEWHVSGKAVWP+KHW MYK  AG+ FP+EL+  AA+ELD  ++VLE EGV VRRPE  P DF++PV TPDF S SQLYAAMPRDVLI
Sbjct:    1 SHNEWDPLEEVIVGRVEGATIPEWHVSGKAVWPSKHWDMYKTRAGQPFPQELLAGAAKELDYLAEVLEGEGVIVRRPEAGPTDFNQPVETPDFSSRSQLYAAMPRDVLI 109
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BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Match: A0A067CLA6_SAPPC (Glycine amidinotransferase, mitochondrial n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLA6_SAPPC)

HSP 1 Score: 170 bits (431), Expect = 2.600e-49
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:   19 TCIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLITV 366
            +C+VNSH EWDPLEE+IVG+++ +TIPEWHV+GKAVWP+++W MYK  AG+ FPREL+  AA+ELD  + VLE EGV VRRPE  P DF +P  TPDF+S S LYAAMPRD+LI V
Sbjct:   21 SCVVNSHNEWDPLEEIIVGKIEGSTIPEWHVAGKAVWPSRYWDMYKNKAGQPFPRELMEAAAKELDYLAHVLEGEGVVVRRPEFNPEDFSKPFETPDFKSKSGLYAAMPRDILIVV 136
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BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Match: K3XBD5_GLOUD (Glycine amidinotransferase, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBD5_GLOUD)

HSP 1 Score: 169 bits (429), Expect = 5.660e-49
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:   19 TCIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLI 360
            T IVNSH EWDPLEEVIVGRV+ ATIPEWHVSGKAVWP+K W MYK  +G+ FP++L+  AA+ELD  ++VLE EG+TVRRPE R   F++PV TPDF+S SQLYAAMPRD+LI
Sbjct:   26 TPIVNSHNEWDPLEEVIVGRVEGATIPEWHVSGKAVWPSKWWDMYKTESGQPFPKKLMDAAAQELDYLAEVLEGEGITVRRPEARDDYFNKPVETPDFKSKSQLYAAMPRDILI 139
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BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Match: A0A6G0WJQ3_9STRA (Glycine amidinotransferase, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJQ3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 7.370e-49
Identity = 77/116 (66.38%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:   19 TCIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLITV 366
            +C+VNSH EWDPLEEVIVGR++ +TIPEWHV+GKAVWP+++W MYK  AG+ FP++L+  AA+ELD  + VLE EGV VRRPE  P DF  PV TPDF+S+  LYAAMPRDVLI V
Sbjct:   37 SCVVNSHNEWDPLEEVIVGRIEGSTIPEWHVAGKAVWPSRYWDMYKTKAGQPFPKDLMEAAAKELDYLAHVLEGEGVRVRRPEFNPDDFKTPVETPDFKSLGGLYAAMPRDVLIVV 152
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BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Match: A0A024USX0_9STRA (Glycine amidinotransferase, mitochondrial n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024USX0_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.460e-48
Identity = 78/116 (67.24%), Postives = 92/116 (79.31%), Query Frame = 1 
Query:   19 TCIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLITV 366
            +C+VNSH EWDPLEEVIVGR++ +TIPEWHVSGKAVWP+++W MYK  AG+ FP +L+  AA ELD  + VLE EGV VRRPE  P DF  PV TPDF+S+  LYAAMPRDVLI V
Sbjct:   37 SCVVNSHNEWDPLEEVIVGRIEGSTIPEWHVSGKAVWPSRYWDMYKTQAGQPFPVDLMKAAATELDYLAHVLEGEGVKVRRPEFNPDDFKTPVQTPDFKSLGGLYAAMPRDVLIVV 152
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BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Match: A0A0P1ABH4_PLAHL (Glycine amidinotransferase, mitochondrial n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABH4_PLAHL)

HSP 1 Score: 168 bits (426), Expect = 1.650e-48
Identity = 81/116 (69.83%), Postives = 92/116 (79.31%), Query Frame = 1 
Query:   19 TCIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLITV 366
            T I+NSH EWDPLEEVIVGR++ ATIPEWHVSGKAVWP K+W MYK  AG+SFP EL+  AA+ELD  ++VLE EG+ VRRPE    DF+  V TPDF S SQLYAAMPRDVLI V
Sbjct:   27 TPIINSHNEWDPLEEVIVGRIEGATIPEWHVSGKAVWPQKYWDMYKTKAGQSFPTELMKGAAKELDYLAEVLEGEGIIVRRPEASDNDFNMEVKTPDFTSRSQLYAAMPRDVLIVV 142
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BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Match: A0A7S1CKT4_9STRA (Glycine amidinotransferase, mitochondrial (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKT4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.650e-48
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:   19 TCIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEV-RPGDFDRPVSTPDFESVSQLYAAMPRDV 354
            T +VNSHTEWDPLEEVIVGRVD AT+PEWHVSGKAVWP+K W ++KE A + FP++L+  AA ELD  +  LE EG+TVRRP+    GDFD  V TPDFES SQLYAAMPRDV
Sbjct:   36 TPVVNSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPSKWWHLFKEDATKPFPKKLMEGAARELDGLAATLEGEGITVRRPDAAETGDFDVAVKTPDFESPSQLYAAMPRDV 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18285.5670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS91_ECTSI6.730e-8197.54Glycine amidinotransferase, mitochondrial n=2 Tax=... [more]
A0A485K2Z9_9STRA1.050e-5372.88Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
A0A662X5V6_9STRA1.030e-5072.81Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
H3G7S4_PHYRM1.460e-4974.31Glycine amidinotransferase, mitochondrial n=8 Tax=... [more]
A0A067CLA6_SAPPC2.600e-4965.52Glycine amidinotransferase, mitochondrial n=4 Tax=... [more]
K3XBD5_GLOUD5.660e-4970.18Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
A0A6G0WJQ3_9STRA7.370e-4966.38Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
A0A024USX0_9STRA1.460e-4867.24Glycine amidinotransferase, mitochondrial n=8 Tax=... [more]
A0A0P1ABH4_PLAHL1.650e-4869.83Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
A0A7S1CKT4_9STRA2.650e-4869.03Glycine amidinotransferase, mitochondrial (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18285contigEcto-sp13_S_contig18285:2482..3109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score251.5
Seed ortholog evalue2e-64
Seed eggNOG ortholog2880.D8LS91
Preferred nameGATM
Model size366
KEGG rclassRC00024,RC02749
KEGG koko:K00613
KEGG ReactionR00565,R01989
KEGG Pathwayko00260,ko00330,ko01100,map00260,map00330,map01100
KEGG ModuleM00047
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006082,GO:0006520,GO:0006575,GO:0006600,GO:0006601,GO:0006807,GO:0006950,GO:0006979,GO:0007275,GO:0007584,GO:0007610,GO:0007611,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009605,GO:0009611,GO:0009719,GO:0009725,GO:0009790,GO:0009888,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0014889,GO:0015067,GO:0015068,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016769,GO:0017144,GO:0019752,GO:0019866,GO:0031090,GO:0031099,GO:0031667,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0040007,GO:0042060,GO:0042221,GO:0042246,GO:0042398,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0043436,GO:0043500,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046689,GO:0048513,GO:0048568,GO:0048589,GO:0048731,GO:0048856,GO:0050877,GO:0050890,GO:0050896,GO:0070013,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901652,GO:1901698,GO:1901700,GO:1990402
Exons2
EggNOG free text desc.glycine amidinotransferase activity
EggNOG OGs2QVCA@2759,COG1834@1
Ec32 ortholog descriptionAmidinotransferase
Ec32 orthologEc-12_004390.1
EC2.1.4.1
Cds size366
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.7818053-CDS-Ecto-sp13_S_contig18285:2481..26801681462941.7818053-CDS-Ecto-sp13_S_contig18285:2481..2680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18285 2482..2680 +
1681462941.8012865-CDS-Ecto-sp13_S_contig18285:2942..31091681462941.8012865-CDS-Ecto-sp13_S_contig18285:2942..3109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18285 2943..3109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18285.5670.1prot_Ecto-sp13_S_contig18285.5670.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18285 2482..3109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18285.5670.1

>prot_Ecto-sp13_S_contig18285.5670.1 ID=prot_Ecto-sp13_S_contig18285.5670.1|Name=mRNA_Ecto-sp13_S_contig18285.5670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MSKIDPTCIVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGM
YKEHAGESFPRELVMKAAEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVS
TPDFESVSQLYAAMPRDVLITV
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mRNA from alignment at Ecto-sp13_S_contig18285:2482..3109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18285.5670.1 ID=mRNA_Ecto-sp13_S_contig18285.5670.1|Name=mRNA_Ecto-sp13_S_contig18285.5670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=628bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18285:2482..3109+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAAAGATAGACCCGACCTGCATCGTCAACTCTCACACGGAATGGGA
CCCGCTGGAGGAGGTGATCGTCGGGCGCGTCGACGACGCGACTATCCCTG
AGTGGCACGTATCGGGCAAGGCTGTGTGGCCCGCCAAGCATTGGGGAATG
TACAAGGAACACGCTGGAGAATCGTTCCCCAGGGAGCTCGTAATGAAAGG
TGAACAGAATGACCCAAGACTTTCGAGCTAGATCGAAGTTTCACCCCACA
GTACGCGGGACATGACGATGATCCAACATTCATTACGCAAGACATGATGA
TGGGTTGTTCGCGCCTCTGCGGAATGGAATTGAACCTCGTCAGGTCCCGC
CCTTTTTTCTCCGAAACTCCTCGCAAGCATTTATTTTCTTGTTCCGTTCC
TACACGCCGATCTCGTCGGTGCACGTGCGTGCGCCCTATTTTTACCACCC
ACCACAACCAGCCGCGGAGGAGCTTGACAACTTTTCGCAAGTTCTTGAGA
TGGAGGGTGTTACCGTGCGCAGGCCGGAGGTACGCCCGGGAGACTTCGAT
AGACCTGTCAGCACCCCAGACTTCGAATCCGTGTCGCAGCTGTACGCGGC
CATGCCACGGGACGTTCTCATCACGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18285:2482..3109+

>mRNA_Ecto-sp13_S_contig18285.5670.1 ID=mRNA_Ecto-sp13_S_contig18285.5670.1|Name=mRNA_Ecto-sp13_S_contig18285.5670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18285:2482..3109+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAAAGATAGACCCGACCTGCATCGTCAACTCTCACACGGAATGGGA
CCCGCTGGAGGAGGTGATCGTCGGGCGCGTCGACGACGCGACTATCCCTG
AGTGGCACGTATCGGGCAAGGCTGTGTGGCCCGCCAAGCATTGGGGAATG
TACAAGGAACACGCTGGAGAATCGTTCCCCAGGGAGCTCGTAATGAAAGC
CGCGGAGGAGCTTGACAACTTTTCGCAAGTTCTTGAGATGGAGGGTGTTA
CCGTGCGCAGGCCGGAGGTACGCCCGGGAGACTTCGATAGACCTGTCAGC
ACCCCAGACTTCGAATCCGTGTCGCAGCTGTACGCGGCCATGCCACGGGA
CGTTCTCATCACGGTG
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