mRNA_Ecto-sp13_S_contig18281.5669.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18281.5669.1
Unique NamemRNA_Ecto-sp13_S_contig18281.5669.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18281.5669.1 vs. uniprot
Match: D7G3H0_ECTSI (Globin, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H0_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 2.940e-54
Identity = 152/271 (56.09%), Postives = 158/271 (58.30%), Query Frame = 3 
Query:  561 GLPDAIAVAVASTFPTAGXXXXXXXXXXGGDCPFSGREGEAFATNASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWSSSSPNDSRALVVPVAKNCAKANGNNSNNLLSPQTPPPSTGRRHGASGASGCGAGMDAYGRYATVESPPRTHRRAVHAGSTPGRALSSGFSTAPSGGEGRALAGXXXXXXGQEHGGAGFQWLPSGAAAGPGGCCAGGAANSQTD 1373
            GLPDAIAVAVASTFPTAGXXXXXXXXXX   CPFSGR+GEAFA +AS                                                                                                   + ANGNNSNNLLSPQTPPPSTGRR+GASGASGCGAGMDAYGRY+TVESPPRTHRRAVHAGSTPGRALSSGFSTAP GGEG+ALA XXXXXX QE   AGFQ L SGA AGPGGCCAGGAANSQTD
Sbjct:  236 GLPDAIAVAVASTFPTAGXXXXXXXXXXXXGCPFSGRDGEAFAMDASS--------------------------------------------------------------------------------------------------STANGNNSNNLLSPQTPPPSTGRRYGASGASGCGAGMDAYGRYSTVESPPRTHRRAVHAGSTPGRALSSGFSTAPGGGEGKALAXXXXXXXXQEQXXAGFQSLASGAXAGPGGCCAGGAANSQTD 408
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BLAST of mRNA_Ecto-sp13_S_contig18281.5669.1 vs. uniprot
Match: A0A6H5K1U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1U5_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.780e-43
Identity = 190/229 (82.97%), Postives = 196/229 (85.59%), Query Frame = 3 
Query:  567 PDAIAVAVASTFPTAGXXXXXXXXXXGGDCPFSGREGEAFATNASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWSSSSPNDSRALVVPVAKNCAKANGNNSNNLLSPQTPPPSTGRRHGASGASGCGAGMDAYGRYATVESPPRTHRRAVHAGSTPGRALSSGFSTAPSGGEGRALAG 1253
            PDAI   VASTFPTAG          GG CPFSGR+GEAF  +AS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      PNDSRALVVPVAKN AK NGNN++NLLSPQTPPPSTG R+GASGASG GAGMDAYGRYATVES PRTHRRAVHAGSTPGR LSSG ST PSGGE +ALAG
Sbjct:  136 PDAIXXXVASTFPTAGAGGSAGGSSAGGGCPFSGRDGEAFPMDASSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXPNDSRALVVPVAKNFAKGNGNNNSNLLSPQTPPPSTGLRYGASGASGFGAGMDAYGRYATVESHPRTHRRAVHAGSTPGRVLSSGLSTEPSGGERKALAG 360
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BLAST of mRNA_Ecto-sp13_S_contig18281.5669.1 vs. uniprot
Match: A0A6H5KC50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC50_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.330e-34
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:    7 KGRLQFKGLLRVEGRFEGVLKAVEGANMMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQG 219
            KGRLQFKGLLRVEGRFEGVLK VEGANMMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQG
Sbjct:   10 KGRLQFKGLLRVEGRFEGVLKPVEGANMMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQG 80
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BLAST of mRNA_Ecto-sp13_S_contig18281.5669.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.590e-7
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:    4 LKGRLQFKGLLRVEGRFEGVLKAVEGANMMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQGNVWCKDLA 243
            +KG L F  LLRV+G F+G L  V   ++++  +G++ G++E    V+ +GTV+GN+ A  V LRR A V GN+ C  L+
Sbjct:   81 VKGELSFDRLLRVDGSFKGQL--VSTGDLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLS 158
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BLAST of mRNA_Ecto-sp13_S_contig18281.5669.1 vs. uniprot
Match: D7FI98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI98_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.450e-6
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 KGRLQFKGLLRVEGRFEGVLKAVEGANMMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQGNVWCKDLA 243
            +G L F  LLRV+G F+G L  V   ++++  +GV+ G+++    V+ +GTV+GN+ A  V LRR A V GN+ C  L+
Sbjct:   14 QGELSFDRLLRVDGSFKGQL--VSTGDLVIGATGVVRGNIDHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLS 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18281.5669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G3H0_ECTSI2.940e-5456.09Globin, putative n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5K1U5_9PHAE1.780e-4382.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC50_9PHAE2.330e-3498.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN16_9PHAE7.590e-741.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI98_ECTSI2.450e-640.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18281contigEcto-sp13_S_contig18281:314..2137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score135.6
Seed ortholog evalue3e-29
Seed eggNOG ortholog2880.D7G3H0
Model size1373
KEGG koko:K02157,ko:K19838,ko:K21440
KEGG Pathwayko04011,ko04310,ko04390,ko04550,ko04934,ko05165,ko05200,ko05210,ko05213,ko05217,ko05224,ko05225,ko05226,map04011,map04310,map04390,map04550,map04934,map05165,map05200,map05210,map05213,map05217,map05224,map05225,map05226
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.positive regulation of GTPase activity
EggNOG OGsKOG3589@1,KOG3589@2759
Cds size693
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.697203-UTR-Ecto-sp13_S_contig18281:313..9061681462941.697203-UTR-Ecto-sp13_S_contig18281:313..906Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18281 314..906 -
1681462941.7300591-UTR-Ecto-sp13_S_contig18281:2050..21371681462941.7300591-UTR-Ecto-sp13_S_contig18281:2050..2137Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18281 2051..2137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.7124891-CDS-Ecto-sp13_S_contig18281:906..14681681462941.7124891-CDS-Ecto-sp13_S_contig18281:906..1468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18281 907..1468 -
1681462941.7217858-CDS-Ecto-sp13_S_contig18281:1919..20501681462941.7217858-CDS-Ecto-sp13_S_contig18281:1919..2050Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18281 1920..2050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18281.5669.1prot_Ecto-sp13_S_contig18281.5669.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18281 907..2050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18281.5669.1

>prot_Ecto-sp13_S_contig18281.5669.1 ID=prot_Ecto-sp13_S_contig18281.5669.1|Name=mRNA_Ecto-sp13_S_contig18281.5669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
MMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQGNVWCKD
LAAAATAVFRNRATESPVPSSSSSSHHHRRSSSTSSGVIGDAGSRSRGGS
GSGSGGRALTPPASSSGNRTTQPTPSPDSDRQVSSTTMAAMTADDSDMAR
RRRRRRRRVCRTPSRLPSPRRFPPQAAVAVRGVVQQGGTVLFRVAKGRRL
RRTLRHRRCWRRHRLRRRLLQTPSLRRRSW*
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mRNA from alignment at Ecto-sp13_S_contig18281:314..2137-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18281.5669.1 ID=mRNA_Ecto-sp13_S_contig18281.5669.1|Name=mRNA_Ecto-sp13_S_contig18281.5669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1824bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18281:314..2137- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTGAAGGGGCGGTTGCAGTTTAAAGGCCTGCTGCGCGTGGAGGGCCG
CTTCGAGGGGGTCCTGAAGGCGGTGGAGGGCGCCAACATGATGGTGGCGC
GATCGGGCGTGATAGCAGGGGACGTGGAGGGATGCCACTCGGTGATCGTC
GAAGGGACGGTTATTGGTAACGTGAGCGCGAGCGTTGTGGTCCTGCGTCG
GTACGCCAACGTCCAGGGGTGAGTTACGTAGCTGTCTCATGTACTGCTGT
CGAGATTTTTCTTTGGAGGAGGGGTTTCCATTTTGCGTGCAGGGGAGAGG
GCACGAGTTTTTCTCGGCATGCGACAACGTGACAACCCGCTTGAGACTCC
TCGTCCTTCGCGTCTGTATATGCGTACGTACTACTCTGGAGAAATGTGTT
GAATCATTCATTTTTCCCACAGAGGTGACTTGCCCGGGGTCATGAGTACC
CCCATCATGAAGCCATCATGAAGCCAACAGCAGTCGGAGCACCCCCCCCT
CCTTTTCGGACTGTCGACCCCATCGATGTTGAGGGTGCCGTCTGTGCCGC
CTCAGCAGAGTGATTAACCTCTTCGGTTTCAGCCATGGCCATATCACGAT
GGCCCCGCGCCCTAGTGAGATAGCCCCCCTGCCCTCACTCCCCAACCGCC
ACCCCCCCTTGAAAACCAGGAACGTGTGGTGTAAAGACTTGGCGGCGGCG
GCAACGGCGGTGTTCCGCAACCGGGCCACGGAGTCGCCGGTCCCGAGCTC
TTCCTCGTCTTCCCACCACCACCGCCGGTCGAGCTCGACCTCCTCGGGCG
TGATCGGCGACGCAGGCAGTCGCTCACGCGGCGGCAGCGGCAGCGGTAGC
GGCGGAAGGGCTCTTACGCCCCCCGCGTCCTCCTCCGGCAACCGCACGAC
CCAACCGACCCCTTCCCCCGATTCAGACCGGCAGGTTTCCTCGACTACGA
TGGCGGCGATGACGGCGGACGACAGCGACATGGCCCGGCGGCGGCGGCGG
CGGCGGCGGCGGGTTTGCCGGACGCCATCGCGGTTGCCGTCGCCTCGACG
TTTCCCACCGCAGGCGGCGGTGGCAGTGCGGGGGGTAGTTCAGCAGGGGG
GGACTGTCCTTTTTCGGGTCGCGAAGGGGAGGCGTTTGCGACGAACGCTT
CGTCATCGACGGTGCTGGCGGCGGCACAGACTTCGGCGGCGTCTGCTACA
AACTCCGTCGTTGCGGCGGCGGTCGTGGTAGGGAGAGGTGGGGCGAAGTC
GGGCGGCGAAGGCAGTAGCAGCAGCAGCAGCAGCAGCAGTCGCCGCGGCA
GCGGCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCAGA
GGCGGCGGCGGCTCGGCCGTACGGGGCAGCGGCGGGCCGTGGTCGTCGTC
GTCGCCCAACGACTCGCGCGCGCTCGTGGTGCCCGTCGCGAAGAACTGTG
CAAAGGCTAACGGCAACAACAGCAACAACCTGCTGTCGCCTCAGACCCCG
CCGCCGTCGACCGGTCGTCGGCACGGAGCTAGCGGTGCTTCCGGTTGCGG
CGCTGGCATGGATGCCTACGGCCGCTACGCGACGGTGGAGTCGCCCCCGC
GCACGCACCGGCGCGCCGTTCACGCCGGGAGCACCCCAGGGAGAGCGCTG
TCGTCAGGCTTCTCGACGGCGCCGAGCGGCGGCGAGGGAAGAGCTTTGGC
AGGAGGGGGAGGAGGGGGGCCGGGGCAGGAGCACGGGGGTGCGGGGTTTC
AGTGGCTGCCGTCCGGAGCCGCGGCGGGTCCCGGTGGCTGCTGCGCCGGT
GGTGCGGCGAACAGCCAGACCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18281:314..2137-

>mRNA_Ecto-sp13_S_contig18281.5669.1 ID=mRNA_Ecto-sp13_S_contig18281.5669.1|Name=mRNA_Ecto-sp13_S_contig18281.5669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18281:314..2137- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGTGGCGCGATCGGGCGTGATAGCAGGGGACGTGGAGGGATGCCA
CTCGGTGATCGTCGAAGGGACGGTTATTGGTAACGTGAGCGCGAGCGTTG
TGGTCCTGCGTCGGTACGCCAACGTCCAGGGGAACGTGTGGTGTAAAGAC
TTGGCGGCGGCGGCAACGGCGGTGTTCCGCAACCGGGCCACGGAGTCGCC
GGTCCCGAGCTCTTCCTCGTCTTCCCACCACCACCGCCGGTCGAGCTCGA
CCTCCTCGGGCGTGATCGGCGACGCAGGCAGTCGCTCACGCGGCGGCAGC
GGCAGCGGTAGCGGCGGAAGGGCTCTTACGCCCCCCGCGTCCTCCTCCGG
CAACCGCACGACCCAACCGACCCCTTCCCCCGATTCAGACCGGCAGGTTT
CCTCGACTACGATGGCGGCGATGACGGCGGACGACAGCGACATGGCCCGG
CGGCGGCGGCGGCGGCGGCGGCGGGTTTGCCGGACGCCATCGCGGTTGCC
GTCGCCTCGACGTTTCCCACCGCAGGCGGCGGTGGCAGTGCGGGGGGTAG
TTCAGCAGGGGGGGACTGTCCTTTTTCGGGTCGCGAAGGGGAGGCGTTTG
CGACGAACGCTTCGTCATCGACGGTGCTGGCGGCGGCACAGACTTCGGCG
GCGTCTGCTACAAACTCCGTCGTTGCGGCGGCGGTCGTGGTAG
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