prot_Ecto-sp13_S_contig18280.5668.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18280.5668.1
Unique Nameprot_Ecto-sp13_S_contig18280.5668.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length133
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18280.5668.1 vs. uniprot
Match: D7FLL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL4_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 1.300e-74
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0 
Query:    1 MEVDGEGGEGGAVSAAGGDKETTLFRIHYQGWPNKYDETLSRDSPNLQPVHTHSKRMKKKPDRKKRRAKEVKEWIREDEFGNIVARGIVGEDDPYDPKVFDKKKAGVEGEAEETKAAPVEGATTNRWG 128
            MEVDGEGGEGGAVSAAGGDKETTLFRIHYQGWPNKYDETLSRDSPNLQPVHTHSKR+KKKPDRKK+RAKEVKEWIREDEFGNIVARGIVGEDDPYDPKVFD+KKA VEGEAEETK  PVEGATTNR+G
Sbjct:   30 MEVDGEGGEGGAVSAAGGDKETTLFRIHYQGWPNKYDETLSRDSPNLQPVHTHSKRLKKKPDRKKKRAKEVKEWIREDEFGNIVARGIVGEDDPYDPKVFDRKKAEVEGEAEETKPVPVEGATTNRYG 157
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BLAST of mRNA_Ecto-sp13_S_contig18280.5668.1 vs. uniprot
Match: A0A6H5KNH9_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.580e-25
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0 
Query:   70 EVKEWIREDEFGNIVARGIVGEDDPYDPKVFDKKKAGVEGEAEETKAAPVEGATTNRWG 128
            EVKEWIREDEFGNIVARGIVGEDDPYDPKVFD+KKA VEGEAEE    PVEGATTNR+G
Sbjct:  217 EVKEWIREDEFGNIVARGIVGEDDPYDPKVFDRKKAEVEGEAEEKNPVPVEGATTNRYG 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18280.5668.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLL4_ECTSI1.300e-7494.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNH9_9PHAE5.580e-2588.14PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.140coord: 11..50
e-value: 3.9E-8
score: 35.1
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 20..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18280contigEcto-sp13_S_contig18280:723..3358 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18280.5668.1mRNA_Ecto-sp13_S_contig18280.5668.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18280 723..3358 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18280.5668.1 ID=prot_Ecto-sp13_S_contig18280.5668.1|Name=mRNA_Ecto-sp13_S_contig18280.5668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MEVDGEGGEGGAVSAAGGDKETTLFRIHYQGWPNKYDETLSRDSPNLQPV
HTHSKRMKKKPDRKKRRAKEVKEWIREDEFGNIVARGIVGEDDPYDPKVF
DKKKAGVEGEAEETKAAPVEGATTNRWGLRRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromo-like_dom_sf