mRNA_Ecto-sp13_S_contig18280.5668.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18280.5668.1
Unique NamemRNA_Ecto-sp13_S_contig18280.5668.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18280.5668.1 vs. uniprot
Match: D7FLL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL4_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 1.300e-74
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 1 
Query:    1 MEVDGEGGEGGAVSAAGGDKETTLFRIHYQGWPNKYDETLSRDSPNLQPVHTHSKRMKKKPDRKKRRAKEVKEWIREDEFGNIVARGIVGEDDPYDPKVFDKKKAGVEGEAEETKAAPVEGATTNRWG 384
            MEVDGEGGEGGAVSAAGGDKETTLFRIHYQGWPNKYDETLSRDSPNLQPVHTHSKR+KKKPDRKK+RAKEVKEWIREDEFGNIVARGIVGEDDPYDPKVFD+KKA VEGEAEETK  PVEGATTNR+G
Sbjct:   30 MEVDGEGGEGGAVSAAGGDKETTLFRIHYQGWPNKYDETLSRDSPNLQPVHTHSKRLKKKPDRKKKRAKEVKEWIREDEFGNIVARGIVGEDDPYDPKVFDRKKAEVEGEAEETKPVPVEGATTNRYG 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18280.5668.1 vs. uniprot
Match: A0A6H5KNH9_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.580e-25
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:  208 EVKEWIREDEFGNIVARGIVGEDDPYDPKVFDKKKAGVEGEAEETKAAPVEGATTNRWG 384
            EVKEWIREDEFGNIVARGIVGEDDPYDPKVFD+KKA VEGEAEE    PVEGATTNR+G
Sbjct:  217 EVKEWIREDEFGNIVARGIVGEDDPYDPKVFDRKKAEVEGEAEEKNPVPVEGATTNRYG 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18280.5668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLL4_ECTSI1.300e-7494.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNH9_9PHAE5.580e-2588.14PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18280contigEcto-sp13_S_contig18280:723..3358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score250.0
Seed ortholog evalue6.3e-64
Seed eggNOG ortholog2880.D7FLL4
Model size399
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K11424,ko:K16675
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04391,ko05202,map00310,map04391,map05202
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.uterine gland development
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1083@2759
EC2.1.1.43,2.3.1.225
Cds size399
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.6427479-CDS-Ecto-sp13_S_contig18280:722..8261681462941.6427479-CDS-Ecto-sp13_S_contig18280:722..826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18280 723..826 +
1681462941.657929-CDS-Ecto-sp13_S_contig18280:2510..26131681462941.657929-CDS-Ecto-sp13_S_contig18280:2510..2613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18280 2511..2613 +
1681462941.6665552-CDS-Ecto-sp13_S_contig18280:3166..33581681462941.6665552-CDS-Ecto-sp13_S_contig18280:3166..3358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18280 3167..3358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18280.5668.1prot_Ecto-sp13_S_contig18280.5668.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18280 723..3358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18280.5668.1

>prot_Ecto-sp13_S_contig18280.5668.1 ID=prot_Ecto-sp13_S_contig18280.5668.1|Name=mRNA_Ecto-sp13_S_contig18280.5668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MEVDGEGGEGGAVSAAGGDKETTLFRIHYQGWPNKYDETLSRDSPNLQPV
HTHSKRMKKKPDRKKRRAKEVKEWIREDEFGNIVARGIVGEDDPYDPKVF
DKKKAGVEGEAEETKAAPVEGATTNRWGLRRQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig18280:723..3358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18280.5668.1 ID=mRNA_Ecto-sp13_S_contig18280.5668.1|Name=mRNA_Ecto-sp13_S_contig18280.5668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18280:723..3358+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGTGGACGGGGAGGGAGGGGAGGGGGGCGCGGTATCGGCGGCGGG
AGGCGACAAGGAGACGACGCTCTTTCGGATCCACTACCAGGGTTGGCCCA
ATAAGTGAGTAACGAAGAGGGCAAGGTACAGGGTGGAGAGAGAGGTCGAT
GCCGCAGGAACTAGGTTTAGGTGCCGCAGTGAGAGGAGCGGAGGTGGACC
GCTAGGATTTGGACAGCAGGTGGAAGAGGGAGAGCTGTAGAACGATAAGA
CAGAGACAAACAGATCTACAGGCAGGCAGAGAGCAGGCAAACGATAGATA
GACAGACAACAGGCAGGCAACTGGCAGGTAAGCAGGCGGGCAGGCAACAA
AGCGGGTGGACACAGACAGTGCACAGAGAGGGGGAAAGAGGCGCGCAGCA
AGTAACCATTCATCATCGCATCATCGCACTCGGCCGAGCTGGGATATTCC
GCTGTTTGATCCATGTGTTGTACCGGCGTTCATCCGTGCACGCCTGTCAT
CAAGGCTTGTTTTGGATACAAGAACCCCCCCCTAACCGTGTCCATCGGCT
ACAGCAATAAAATTCGTCATGTGATTCGATCGGTTTTTATTGGCGTTGTT
CGGTGCATGCACGTTGTAGTTTCACCAGTGTGTCTCCTGCCTCCTCCCAC
GCTGGGTGGTTGGTGGTTGATGGAGGCTTTTTTTGTGCGGGTATCGCCCT
TCGCAGTACCGTACCCCCCCGTTGTCTTTGTTTGAGGGCCTGGATTGCCG
GGGGGGGATTGTCACCTAAGTTAAGTACCAAACTGGATGGACCTAATTGG
GTTTTTGGTCAAAAAGGGGATGCGTCGTTTTAACGCAAGTTTGCCACATC
GAGGTTCGGCAACACCCAAATGCGGCGAAATCGCTGCCGCGAGGTGACGT
GGTGACCCAACCAGGTAGAGCGATAGACCATGTGCACCACACGGGATGTC
AGCACACACTCGAAGCTAAGCATCAGCAGGCGGTGCCGGCGGTCCAAGAT
TCATCCTCAGGCTTGCTCTACATCTGTTGTTTGGACTGTCTCGCTGCACA
CAACCGGCCGCTGGCTTTTGACATCGCACATATTGGAGAGCAGCTTCTAC
AGCAACCCAACCAGCGCGAAAAGTTGACACGCTCACAGATTCATTGCATA
CAGCTATTTCTCAGCAGCGGGCAGTAGGCGATGCGTGTGGGTGCCGCACG
GCCAGTGTGCCACATGCAGTCCCGTCAGGGGTATCGCCAGCACGAGTTCA
GCTCATCACGGGGGTGCACAAGGGACGCAGTGCAAGTCGGGTACTTCGAT
TCAGCAAAGAACAACTCAATTTGCAATTGTTTTTGCTGCACCCAATATCG
ATGTCCCGCTTTTCCGGGCAGAAAAAGCATCAGCATGTTTTTTCCTGTTG
ACCAGTCAGCGTCTTTGGCCCCCGGCGCCTCCCCGAAAGTTTTTTTTTGC
AGGGCCTCAATTTAAGTGCAATTTTTGAACGTTTAAACAGGCCCTGAGCC
CTTGCCCAAGTCCCGCAGACAACATCCAGCTGTGAGGCTGGGATTTTTTT
TTTTTAGCTCACTCGCTCTGTGTTTCTCGGGTCCAGTGGCGTTTTCTGTG
GCTGTTGTCGTCATTGAGGATGCTGTTTTGATGTTGCGTTGGTGTGATGA
TGTCGTTGTTGTCCCTGCATTTGTTGTTTTCCATGTGTCTACAGGTACGA
CGTGTTGTGGTCGCTCCTGCCGTTCCTGATGCTGATGTTGTCCTTGTGTT
TGTCCCTGTATTGTCGTCGTTATTGGTGTGTCTTACAGGTATGACGAGAC
GCTGTCGCGAGACTCGCCCAACCTGCAGCCCGTGCACACGCACTCGAAGA
GGATGAAGAAGAAGCCCGACAGGAAGAAGAGGCGCGCAAAGGCGAGCCGT
GGAAAATTACCACTCTCTTGTCCCTGCTGCTGTGTTTGATGCTGCAGCTG
CTGTTGCGGTTGTTGTTGTCGTTTTCTTCTTGCTGGCCTTCACTCTGACA
AACAAACCGATCCTTCCTCCGTTTTTGAGAGTCCTCTCCTCCGCTGCTAC
CCGCGCTCCTCTCAGCCCCGTACCGTCGAGCCTGCGCACAGCCAACCCCA
CTCCTGTGCACCACCTGAGTATCACCCGCCGTTCACGCTCACCCTGGGTA
TTTCTAACTCTCGGCGATCGTCTCACACTTTCCCTCGGACGAACCCGTTG
TACAATCCACGAGCATCCATCCCGTACCGTGGGCGACCCTGTTTACTTCC
GGTATGCGTAAACGCCCAGAGAATTTACCCCATGGTATGCTGGACACCAG
CACTGCTGGAAAGTACAGAATTCCTTGGCGATTCAACCTATGCCAGCCGA
ATAAACCGGCACTTTACCGGGCACCGGCACTTATGAGACCCCCACACTGC
TGTGTTGTGTCACGGTACGGTAATCTACGACCTGTTACCCGCAGGAGGTC
AAGGAGTGGATCCGCGAGGACGAGTTCGGGAATATCGTGGCGAGAGGCAT
CGTGGGAGAGGATGACCCGTACGACCCAAAGGTTTTCGACAAAAAGAAGG
CGGGGGTCGAGGGGGAGGCGGAAGAGACGAAGGCTGCGCCGGTGGAGGGA
GCCACAACCAACAGGTGGGGGCTCCGCAGACAGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18280:723..3358+

>mRNA_Ecto-sp13_S_contig18280.5668.1 ID=mRNA_Ecto-sp13_S_contig18280.5668.1|Name=mRNA_Ecto-sp13_S_contig18280.5668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18280:723..3358+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGTGGACGGGGAGGGAGGGGAGGGGGGCGCGGTATCGGCGGCGGG
AGGCGACAAGGAGACGACGCTCTTTCGGATCCACTACCAGGGTTGGCCCA
ATAAGTATGACGAGACGCTGTCGCGAGACTCGCCCAACCTGCAGCCCGTG
CACACGCACTCGAAGAGGATGAAGAAGAAGCCCGACAGGAAGAAGAGGCG
CGCAAAGGAGGTCAAGGAGTGGATCCGCGAGGACGAGTTCGGGAATATCG
TGGCGAGAGGCATCGTGGGAGAGGATGACCCGTACGACCCAAAGGTTTTC
GACAAAAAGAAGGCGGGGGTCGAGGGGGAGGCGGAAGAGACGAAGGCTGC
GCCGGTGGAGGGAGCCACAACCAACAGGTGGGGGCTCCGCAGACAGTAA
back to top