mRNA_Ecto-sp13_S_contig18279.5666.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18279.5666.1
Unique NamemRNA_Ecto-sp13_S_contig18279.5666.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Match: A0A6H5JSZ9_9PHAE (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ9_9PHAE)

HSP 1 Score: 604 bits (1557), Expect = 2.600e-213
Identity = 307/324 (94.75%), Postives = 312/324 (96.30%), Query Frame = 3 
Query:   57 MLLNSAAVARDCSALSRRRCGLFPRTLSSAASAQRSNDRRSSESVSSRWCLHHRYRRPVPPSHCAVPCVSVWRPRSTRSAGGGVSSTHSRDDTSTRRSLPLGEPRAPPASTSSGNRSGSFSSGSGGDGLESDSAVLRMLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKKRPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLYG 1028
            MLLNSAAVAR CSALSRRRCGLFPRTLSSAASAQRSND RSS+SVSSR CLHHRYRRPVP SHCAVP VSVWR RSTRSAGGGVSSTHS+DDTS R SLPLG+PRAP  S+SS NRSGSFSSGSGGDGLESDSAVLRMLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTK+RPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLG AVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLYG
Sbjct:    1 MLLNSAAVARGCSALSRRRCGLFPRTLSSAASAQRSNDVRSSQSVSSRCCLHHRYRRPVPLSHCAVPFVSVWRLRSTRSAGGGVSSTHSKDDTSIRPSLPLGQPRAPLGSSSSSNRSGSFSSGSGGDGLESDSAVLRMLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKQRPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGLAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLYG 324
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BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Match: D7G4D2_ECTSI (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D2_ECTSI)

HSP 1 Score: 387 bits (995), Expect = 3.790e-130
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 3 
Query:  468 MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKKRPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLYG 1028
            MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTK+RPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAG CWTLVYDTLYG
Sbjct:    1 MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKQRPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGFCWTLVYDTLYG 187
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BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Match: A0A835ZKZ5_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKZ5_9STRA)

HSP 1 Score: 296 bits (757), Expect = 3.930e-94
Identity = 137/190 (72.11%), Postives = 153/190 (80.53%), Query Frame = 3 
Query:  459 VLRMLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKKRPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLYG 1028
            +LR+LG R++PYGRLAR+DKP GT+LLL+PCWWS ALAAP G LPD KL+ALF TG+ +MRSAGC INDLWDKDFD+ V RTK RPLASGEL    A   LG  LT GLGVLLSLN EC KLGFA MPLV++YPL KR T WPQAVLGL  NWGA++GW AVHG   W  VLPLY AGVCWT+VYDTLYG
Sbjct:    1 MLRLLGTRFAPYGRLARVDKPIGTMLLLWPCWWSTALAAPAGALPDFKLLALFGTGAFVMRSAGCIINDLWDKDFDKSVERTKDRPLASGELSTRDAFVLLGGSLTAGLGVLLSLNTECWKLGFAAMPLVISYPLTKRVTWWPQAVLGLAMNWGALVGWTAVHGYTDWGLVLPLYSAGVCWTMVYDTLYG 190
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BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Match: W4G4L2_9STRA (4-hydroxybenzoate polyprenyl transferase, variant 1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4L2_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.120e-78
Identity = 124/184 (67.39%), Postives = 147/184 (79.89%), Query Frame = 3 
Query:  477 PRWS-PYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKKRPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLY 1025
            P+W  PY +L+RI++PAGT +LL+PC+WS ALAAP+G LPD  L+ALFATGS++MRSAGCTIND+WDKDFD++V RT +RPLASG L   QA  FLG QL+ GL VLL LN   I LG   +  VVAYP MKR T WPQA+LGLTFN+GA++GWAAVHGS +W  VLPLY AGV WTLVYDTLY
Sbjct:   72 PKWMVPYIQLSRINRPAGTYMLLWPCFWSTALAAPVGALPDPTLLALFATGSLIMRSAGCTINDMWDKDFDKQVERTNQRPLASGALTYRQAWTFLGVQLSAGLAVLLQLNPYSIGLGATSLGFVVAYPYMKRITYWPQAMLGLTFNYGALVGWAAVHGSCAWSVVLPLYAAGVSWTLVYDTLY 255
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BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Match: W4G4W3_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4W3_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.600e-77
Identity = 124/184 (67.39%), Postives = 147/184 (79.89%), Query Frame = 3 
Query:  477 PRWS-PYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKKRPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLY 1025
            P+W  PY +L+RI++PAGT +LL+PC+WS ALAAP+G LPD  L+ALFATGS++MRSAGCTIND+WDKDFD++V RT +RPLASG L   QA  FLG QL+ GL VLL LN   I LG   +  VVAYP MKR T WPQA+LGLTFN+GA++GWAAVHGS +W  VLPLY AGV WTLVYDTLY
Sbjct:   72 PKWMVPYIQLSRINRPAGTYMLLWPCFWSTALAAPVGALPDPTLLALFATGSLIMRSAGCTINDMWDKDFDKQVERTNQRPLASGALTYRQAWTFLGVQLSAGLAVLLQLNPYSIGLGATSLGFVVAYPYMKRITYWPQAMLGLTFNYGALVGWAAVHGSCAWSVVLPLYAAGVSWTLVYDTLY 255
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BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Match: A0A6U3UIB2_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UIB2_9STRA)

HSP 1 Score: 258 bits (659), Expect = 3.050e-77
Identity = 125/181 (69.06%), Postives = 146/181 (80.66%), Query Frame = 3 
Query:  489 PYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKKRPLASGELGNTQAIAFLGAQLTLGLGVLLSL-NIE-CIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLY 1025
            PY +LAR+DKP GT+LLL+PC+WS A+AAP G+LPD KL+ LF  GS +MR AGCTIND+WD DFD+ V+RTK RPLASGEL + QA  FL AQLT GLGVLLSL ++E C  LG + +PLV +YPLMKRYT+WPQ VLGLTFNWGA MGWAA HGS  +  VLPLY +GV WTLVYDTLY
Sbjct:  174 PYAKLARMDKPIGTMLLLWPCFWSTAIAAPAGSLPDLKLLGLFTVGSFVMRGAGCTINDMWDSDFDKSVSRTKTRPLASGELTHHQASKFLLAQLTTGLGVLLSLPHLEYCFVLGASSLPLVFSYPLMKRYTNWPQLVLGLTFNWGAFMGWAATHGSLDYSVVLPLYASGVTWTLVYDTLY 354
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BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Match: A0A7S4D5R8_HETAK (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5R8_HETAK)

HSP 1 Score: 255 bits (652), Expect = 3.090e-77
Identity = 134/214 (62.62%), Postives = 155/214 (72.43%), Query Frame = 3 
Query:  402 RSGSFSSGSGGDGLESDSAVLRMLGPRWS---PYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKKRPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGS---ASWEHVLPLYGAGVCWTLVYDTLY 1025
            +SG   SG   DGL   S+        WS   PY RL+R+DKP GT+LLL PC WS+A+AAP G+ PD KL+ALF+TGS +MRSAGCTINDLWDK++D KV RTK RPLA+GE+G  QA++FLG QLT GLGVLL LN  CI +GF VMPLVVAYPLMKR T WPQ VLGL FNWGA+MG AA  G+   A+     PLY   V WTLVYDTLY
Sbjct:   69 KSGGVPSGKQIDGLVPPSSNT------WSKIEPYFRLSRLDKPIGTMLLLHPCLWSLAIAAPAGSFPDMKLVALFSTGSFIMRSAGCTINDLWDKNYDAKVERTKNRPLATGEIGVPQAVSFLGLQLTAGLGVLLQLNTPCILMGFGVMPLVVAYPLMKRVTHWPQLVLGLAFNWGALMGHAAATGAVDAAALAVTGPLYAGAVAWTLVYDTLY 276
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BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Match: I0Z9K3_COCSC (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z9K3_COCSC)

HSP 1 Score: 251 bits (642), Expect = 5.170e-77
Identity = 116/179 (64.80%), Postives = 138/179 (77.09%), Query Frame = 3 
Query:  489 PYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKKRPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLY 1025
            PY +L R+  P GT LL +PC+WSIALAAP G LPDAKL+ALF  G++L+R AGCT+NDLWD+D D KV RTK RPLA+G +   QA+ FLGAQL LGL +L+ LN   I LG + + LV  YPL KR+T WPQA LGLTFNWGA++GWAAVHGS  W  VLPLY +GVCWTLVYDT+Y
Sbjct:    3 PYAQLMRLQAPIGTWLLAWPCFWSIALAAPSGALPDAKLLALFGAGALLLRGAGCTVNDLWDRDLDAKVERTKSRPLAAGTITPFQAVGFLGAQLLLGLAILVQLNPYSILLGASSLGLVFTYPLFKRFTHWPQAFLGLTFNWGALLGWAAVHGSCDWAVVLPLYASGVCWTLVYDTIY 181
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BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Match: E1ZFN2_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZFN2_CHLVA)

HSP 1 Score: 249 bits (637), Expect = 2.980e-76
Identity = 116/181 (64.09%), Postives = 139/181 (76.80%), Query Frame = 3 
Query:  483 WSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKKRPLASGELGNTQAIAFLGAQLTLGLGVLLSLNIECIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLY 1025
            W PY +L R++KP GT LL +PC WSI LAAP GT PD +LMALF  G+VL+R AGCTINDLWD++ DR+V RT+ RPLA+G +   QA+AFL AQL+ GL +L+ LN     LG + + LV AYPLMKR T WPQA LGLTFNWGA++GWAAVHGS  W  VLPLY +GVCWTLVYDT+Y
Sbjct:    4 WVPYAQLMRLEKPIGTWLLAWPCLWSICLAAPPGTSPDLRLMALFGLGAVLLRGAGCTINDLWDRELDRRVERTRGRPLAAGAVTPAQAVAFLAAQLSAGLAILVQLNPYSQLLGASSLALVAAYPLMKRVTGWPQAFLGLTFNWGALLGWAAVHGSCQWGVVLPLYASGVCWTLVYDTIY 184
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BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Match: A0A7S0C033_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C033_9STRA)

HSP 1 Score: 255 bits (652), Expect = 3.600e-76
Identity = 122/181 (67.40%), Postives = 150/181 (82.87%), Query Frame = 3 
Query:  489 PYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMRSAGCTINDLWDKDFDRKVTRTKKRPLASGELGNTQAIAFLGAQLTLGLGVLLSL-NIE-CIKLGFAVMPLVVAYPLMKRYTDWPQAVLGLTFNWGAIMGWAAVHGSASWEHVLPLYGAGVCWTLVYDTLY 1025
            PYGRLAR+DKP G++LLL+PC WS +LAA +G+ PD +L+ LF  GS +MR AGCTIND+WD ++D+KV RT  RPLASGEL +TQA+ FL AQL+ GLGVL+SL N+E C  LG + +PLVVAYPLMKRYT +PQ VLGLTFNWGAIMG+AAVHG+  +  +LPLYG+G+CWTLVYDTLY
Sbjct:  181 PYGRLARLDKPWGSMLLLWPCLWSTSLAADVGSFPDWELVGLFTAGSFIMRGAGCTINDMWDSEYDKKVFRTTSRPLASGELNHTQAMIFLAAQLSAGLGVLVSLPNVEYCFILGASSLPLVVAYPLMKRYTRYPQFVLGLTFNWGAIMGYAAVHGALDYSVILPLYGSGICWTLVYDTLY 361
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18279.5666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSZ9_9PHAE2.600e-21394.754-hydroxybenzoate polyprenyltransferase, mitochond... [more]
D7G4D2_ECTSI3.790e-13098.934-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A835ZKZ5_9STRA3.930e-9472.114-hydroxybenzoate polyprenyltransferase, mitochond... [more]
W4G4L2_9STRA1.120e-7867.394-hydroxybenzoate polyprenyl transferase, variant ... [more]
W4G4W3_9STRA1.600e-7767.394-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A6U3UIB2_9STRA3.050e-7769.064-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A7S4D5R8_HETAK3.090e-7762.624-hydroxybenzoate polyprenyltransferase, mitochond... [more]
I0Z9K3_COCSC5.170e-7764.804-hydroxybenzoate polyprenyltransferase, mitochond... [more]
E1ZFN2_CHLVA2.980e-7664.09Uncharacterized protein (Fragment) n=1 Tax=Chlorel... [more]
A0A7S0C033_9STRA3.600e-7667.404-hydroxybenzoate polyprenyltransferase, mitochond... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18279contigEcto-sp13_S_contig18279:596..3018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score189.5
Seed ortholog evalue8.8e-46
Seed eggNOG ortholog2880.D7G4D2
Preferred nameCOQ2
Model size1450
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K07964,ko:K13412
KEGG ReactionR05000,R05616,R07273,R07811
KEGG Pathwayko00130,ko00531,ko01100,ko01110,ko04626,ko05145,ko05205,map00130,map00531,map01100,map01110,map04626,map05145,map05205
KEGG ModuleM00078,M00128
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0002083,GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0006066,GO:0006071,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008412,GO:0009058,GO:0009059,GO:0009108,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009987,GO:0010259,GO:0010467,GO:0016020,GO:0016021,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019400,GO:0019438,GO:0019748,GO:0019751,GO:0019866,GO:0030880,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032592,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042180,GO:0042181,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044455,GO:0044464,GO:0044550,GO:0046483,GO:0048856,GO:0050829,GO:0050830,GO:0050832,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098542,GO:0098573,GO:1900558,GO:1900560,GO:1900561,GO:1900563,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901661,GO:1901663,GO:1902494,GO:1990234
Exons2
EggNOG free text desc.4-hydroxybenzoate decaprenyltransferase activity
EggNOG OGsCOG0382@1,KOG1381@2759
Ec32 ortholog descriptionUbiA prenyltransferase family
Ec32 orthologEc-00_007350.1
EC2.5.1.39,2.7.11.1,3.2.1.166
Cds size351
COG Functional cat.H
CAZyGH79
BiGG ReactioniMM904.YNR041C,iND750.YNR041C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01001,ko01006
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.4122422-UTR-Ecto-sp13_S_contig18279:595..7131681462941.4122422-UTR-Ecto-sp13_S_contig18279:595..713Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18279 596..713 -
1681462941.4413025-UTR-Ecto-sp13_S_contig18279:1064..14051681462941.4413025-UTR-Ecto-sp13_S_contig18279:1064..1405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18279 1065..1405 -
1681462941.46136-UTR-Ecto-sp13_S_contig18279:2378..30181681462941.46136-UTR-Ecto-sp13_S_contig18279:2378..3018Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18279 2379..3018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.426848-CDS-Ecto-sp13_S_contig18279:713..10641681462941.426848-CDS-Ecto-sp13_S_contig18279:713..1064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18279 714..1064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18279.5666.1prot_Ecto-sp13_S_contig18279.5666.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18279 714..1064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18279.5666.1

>prot_Ecto-sp13_S_contig18279.5666.1 ID=prot_Ecto-sp13_S_contig18279.5666.1|Name=mRNA_Ecto-sp13_S_contig18279.5666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MVRAYAGPSCTTPSTANQDKADDKRLGIRSTALLFGDRTKPILAGFGTAS
VGLLTASGVTAELSWPFFAGTAAAGGHLAWQIYSADLEDPAGLFKIFRSN
QNFGALVFASIVCGHF*
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mRNA from alignment at Ecto-sp13_S_contig18279:596..3018-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18279.5666.1 ID=mRNA_Ecto-sp13_S_contig18279.5666.1|Name=mRNA_Ecto-sp13_S_contig18279.5666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18279:596..3018- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGTAGCGTGTAGCACAGCAGTAGTAGAGACACAGGAAGAGACCTTCGC
CGAGTGATGCTGCTCAATAGTGCAGCAGTAGCACGCGACTGCAGCGCTCT
TTCCCGGCGTCGCTGTGGCCTGTTTCCTCGGACGCTCTCATCTGCTGCGA
GTGCACAGCGGAGCAATGATCGTCGGTCGTCAGAATCGGTCAGCAGCAGA
TGGTGTCTACACCATCGCTACCGCCGACCAGTTCCACCATCTCATTGCGC
GGTTCCTTGTGTGTCGGTGTGGAGGCCGAGAAGTACCAGAAGCGCTGGCG
GCGGCGTCTCCAGCACCCACAGCAGAGACGACACGTCCACAAGACGATCA
TTACCGTTAGGCGAGCCGCGGGCACCCCCTGCCAGTACAAGTAGTGGCAA
CAGGAGTGGCAGCTTCAGCAGTGGGAGTGGCGGAGACGGCCTGGAGAGCG
ATAGCGCCGTGTTGAGGATGCTGGGCCCGCGTTGGAGCCCGTACGGGCGC
TTGGCTAGAATCGACAAACCAGCAGGGACTTTACTCTTGCTGTTCCCTTG
CTGGTGGAGCATTGCGCTGGCGGCGCCGATGGGTACTCTCCCTGATGCCA
AGCTGATGGCCCTGTTCGCCACCGGATCTGTTTTGATGAGGTGATTGTCG
ATACCGAACTGTTTCAGGCACATGATACCTTCGCCATCCTTGTCTGTAGG
GGTTCGCAGAGTACCAACTGGCGTGCCGAGTGATGGATGTAACGGCGTGG
AGTAGAATAAAATCCAAAGGATTTGGATCCGGACGGAGATCATGTGTGTG
GATCCTTTCATACGTGGATGCGTCGAGGGCGGTTGACCAATGAGAAGACC
CAATTCTTGAAGCAGGAAACAGTACAATACGAGGACGCTTTTAGTCATGG
GTATATACCACATGAAACGCGCCGCCTGGAAATTTCTCTCTTGTTGGCCG
AGGCTCGGGTCCTTGCTTCTTTCTCAGGTCATCAACAGCCACTATATATA
GGTTTTTGTTAAGGCTCATTTCCAGGTACAACAAGCGAGTCCTGGTCAAA
CATGTTGATGCTCCGCGGTTCAGCGGCGCAAATTGCTCACCTGCCAGGCT
CTTGGATGGTGGTGCGTTCTGTATTGCTGTATGGTCGTCCCTTTGATTCT
GGGCGTGAGACGATTTCTACATCTTCGGTATGCTTACGTTCCTGGAAGCA
TCAGCTGGGGTCACACAGGAGGCAAGGCCGCACAAGAACGGAGTGCTTTC
GAAACATGTTTTATCTGCAGCAGCAACGAAGACTGCACCTTTGTACGGCG
TCGATCTGCATAATGTACACAACACTCCGGCCTGTTCTTCACGGCAATCC
CGACAACACCATGTTGTGTTTGCCGGAGCAGGGCCGCCTCACGCAGCCTC
ACGCAGGAGAGCGATTGCTTCCAGTTTTTCCTCCGAATCGTGATGCTTTC
AACGACGTCGTCTTTCGTCGTTTACACACCGCCGGCGCGTGAGATCCAAC
CATGAACCTTTTATGACCAAACGTGTCGCGAAACAGCGGTGTTGTCCTAG
TAAAACCGGTAACCTCTCCACTCAAATGCCTTCTTTTGCCCTCCTATCGC
CAAATGTTCGCAGGTCGGCGGGGTGCACAATCAATGACCTGTGGGATAAG
GACTTCGACCGCAAGGTGACACGAACCAAGAAGCGGCCGTTGGCGTCCGG
CGAGCTCGGGAACACGCAGGCGATCGCCTTCCTCGGGGCACAGCTCACGC
TGGGCCTGGGCGTGCTTCTCAGCCTCAACATCGAGTGCATCAAGCTCGGC
TTCGCCGTGATGCCCCTGGTAGTCGCGTACCCGCTCATGAAGCGCTACAC
GGACTGGCCCCAGGCCGTCCTGGGGCTGACCTTCAACTGGGGCGCGATCA
TGGGATGGGCAGCGGTTCACGGGTCCGCTTCTTGGGAACACGTCTTACCG
CTGTATGGTGCGGGCGTATGCTGGACCCTCGTGTACGACACCCTCTACGG
CCAACCAGGACAAGGCGGACGACAAGCGTCTCGGCATTAGGTCCACCGCT
CTCCTTTTCGGCGACAGAACGAAGCCGATTCTCGCCGGGTTTGGGACAGC
GTCGGTGGGGCTGTTGACGGCCTCGGGAGTGACGGCGGAGCTGTCTTGGC
CATTCTTTGCGGGCACTGCGGCTGCGGGAGGGCACCTTGCGTGGCAGATT
TACTCTGCGGATCTCGAAGACCCAGCAGGGCTTTTCAAGATTTTCAGGTC
CAATCAGAATTTCGGTGCCTTAGTTTTCGCGAGCATCGTGTGCGGGCATT
TCTGATCGAGGTCATGGCTGCCGTGAGGATCGCTGAATTAATGAGTGTAT
CACCCAGTGTTTGATGTGAACCTTTTCCGCATTGCGTTTGTGCTCTCTGC
GTTGTGCTTCTGCTGTATTTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18279:596..3018-

>mRNA_Ecto-sp13_S_contig18279.5666.1 ID=mRNA_Ecto-sp13_S_contig18279.5666.1|Name=mRNA_Ecto-sp13_S_contig18279.5666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18279:596..3018- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCGGGCGTATGCTGGACCCTCGTGTACGACACCCTCTACGGCCAA
CCAGGACAAGGCGGACGACAAGCGTCTCGGCATTAGGTCCACCGCTCTCC
TTTTCGGCGACAGAACGAAGCCGATTCTCGCCGGGTTTGGGACAGCGTCG
GTGGGGCTGTTGACGGCCTCGGGAGTGACGGCGGAGCTGTCTTGGCCATT
CTTTGCGGGCACTGCGGCTGCGGGAGGGCACCTTGCGTGGCAGATTTACT
CTGCGGATCTCGAAGACCCAGCAGGGCTTTTCAAGATTTTCAGGTCCAAT
CAGAATTTCGGTGCCTTAGTTTTCGCGAGCATCGTGTGCGGGCATTTCTG
A
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