mRNA_Ecto-sp13_S_contig18276.5665.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18276.5665.1
Unique NamemRNA_Ecto-sp13_S_contig18276.5665.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Match: D8LL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL21_ECTSI)

HSP 1 Score: 515 bits (1326), Expect = 1.730e-173
Identity = 351/474 (74.05%), Postives = 355/474 (74.89%), Query Frame = 1
Query:    7 KIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXXXXG--------------------------------------------------------------------------------------GMMASARGGMQMXXXXXXXXXXXXHGMGQQMMGMNPNHPQQVRSGADVPEAPAPAAGGLGYPGAFIQYQPDDILKIVSTLSQSDVAEVPGVADIREHSLAFDADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGEGHDPQQQAGSALRGEGYGGGGAAGESKKKSDKSRREKGADRPSSDDSKARGGEEKPGRADPAAATAGAKSKDASKDSGAAGGXXXXXXXXXXXXXXXXXEGAPPRPTRGWEKPEFTQQKQRGLSAGSDAGNRGGKVASAK 1170
            KIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDAL TILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXXX G                                                                                      GMMA ARG M  XXXXXXXXXX  HGMGQQMMGMN NHPQQ  +      APAPAAGGLGYPGAFIQYQPDDILKIVSTLSQSDVA VPGVADIREHSLAF+ADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGEGHDPQQQAGSA RGEG+GG    GESKKKSD+SRREKGADRPSSDDSKARGGEEKPGRADPA ATAGAKSKDASKDSGA   XXXXXXXXXXXXXXX  E APPRPTRGWEKPE TQQKQRGLSAGSDAGNRGGK  SAK
Sbjct:  164 KIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALNTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXXXAGAGMPGGIPYGMMNGMGAPMMNGQPNYGYSGPGARGGMYGRGGMXXXXXXXXXXXXXXXXGMRFXXXXXXXXXXXXXXXXXXXXRGGGMMAGARGXMXXXXXXXXXXXXQQHGMGQQMMGMNANHPQQAAA-----PAPAPAAGGLGYPGAFIQYQPDDILKIVSTLSQSDVAVVPGVADIREHSLAFEADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGEGHDPQQQAGSAPRGEGHGGXXXXGESKKKSDRSRREKGADRPSSDDSKARGGEEKPGRADPAVATAGAKSKDASKDSGAXXXXXXXXXXXXXXXXXXAGEWAPPRPTRGWEKPEVTQQKQRGLSAGSDAGNRGGKATSAK 632          
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Match: A0A6H5KRS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS0_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 5.330e-101
Identity = 243/504 (48.21%), Postives = 248/504 (49.21%), Query Frame = 1
Query:    7 KIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXXXXGG------------------------------------------------------------------------------------MMASARGGMQMXXXXXXXXXXXXHGMGQQMMGMNPNHPQQ-------------------------------------------------------------------------------------------------------------------------VRSG--------ADVPEAPAPAAGGLGYPGAFIQYQPDDILKIVSTLSQSDVAEVPGVADIREHSLAFDADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGEGHDPQQQAGSALRGEGYGGGGAAGESKKKSDKSRREKGADRPS 879
            KIR+IFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAA                   G                                                                                    MMA ARGGMQMXXXXXXXXXXX HGMGQQMMGMN NHPQQ                                                                                                                         V +G        ADVPEAPAPA GGLGYPGAFIQYQPDDILKIVSTLSQSDVA VPGVADIREH+LAF+ADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGEGHDPQQQA S  RGEG+G              SRREKG DRPS
Sbjct:  169 KIRKIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAAAAPYGLGAGPAGAGMPGGIPYGMMNGMGAPMMNGQPNYGYSGPGARGGMYGRGGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMAGARGGMQMXXXXXXXXXXXQHGMGQQMMGMNANHPQQGGGYGGANGGAGAPYSGQHQXXXXXXXXXXXXXXXXKKGDRGNSAQQGXXXXXXXXXXXXXXXXSGGRDMLSAANFPPLPGTDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAASTDDMVTTGEADASSPAADVPEAPAPAPGGLGYPGAFIQYQPDDILKIVSTLSQSDVAVVPGVADIREHALAFEADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGEGHDPQQQAVSVPRGEGHGXXXXXXXXXXXXXXSRREKGTDRPS 672          
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Match: A0A1V9Z8Y3_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8Y3_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.510e-27
Identity = 91/267 (34.08%), Postives = 127/267 (47.57%), Query Frame = 1
Query:    7 KIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXXXXGGMMASARGGMQMXXXXXXXXXXXXHGMGQQMM---GMNPNHPQQVRSGADV---------PEAPAPAAGGLGYP------GAFIQ-YQPDDILKIVSTLSQSDVAEVPGVADIREHSLAFDADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGE 750
            ++  IF G G   + S+RSDVGDTWFVT+ SE++A+ T+LALR KTF    IKARLKSENL +SFFP  T +    +A+                  G      + G               +G G +     G   + P   +S             P+A  P    + +P      G   Q Y  DDI++IV  + ++D     G  D   HS A   DA+  L+  QR+ SI++ RE LR+GRP+  + V  G+VDY + MYGE
Sbjct:  111 EVEAIFAGCGA--VTSVRSDVGDTWFVTLASEEEAVNTLLALRNKTFNNAPIKARLKSENLFKSFFPQQTPS----SASAPSPVATSAYSVGMYGSAGYYGMPTQYGKDGRPRKGQGNFRAANGAGARTPSKEGKKGSTPSAKKSXXXXXXXXXXXKEPKAKQPILNAVNFPPLPTNVGTITQSYSHDDIMEIVKHMDEADCVLPEGKMDFEAHSAALTPDAHPDLLRNQRTYSIEQAREALRQGRPIRSDSV--GSVDYESMMYGE 369          
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Match: A0A836CN94_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN94_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.090e-26
Identity = 120/425 (28.24%), Postives = 151/425 (35.53%), Query Frame = 1
Query:   10 IREIFTGDGVAPIKSIRSDV-------------------GDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXXXXGGMMASARGGMQMXXXXXXXXXXXXHGMGQQMM----GMNPNHPQQV---------------------------------------------------------------------------RSGAD-----------------------VPEAPAPAAGG------------------------------------------LGYPGAFIQYQPDDILKIVSTLSQSDVAEVPGVADIREHSLAFDADANLGLMMRQRS-------------VSIDECREQLRKGRPVHREGVI-AGAVDYGTYMYGEG 753
            ++ IF+G+G  PIK +RSDV                   GDTWFV   SE +A++TILALR KTF+GK IKARLK EN+LRSFFPVP AA     A                   GGM +   G                 GM Q  M    G  P  P                                                                              R+G+                            P  A GG                                           GY G F +Y+P++IL+IV  +S  DVA + G  D  EH+LA +A A+ G+++RQ S             VSIDE REQLR+GRPVHRE ++ AGAVDY T M+G+G
Sbjct:  167 VKAIFSGEGTVPIKGVRSDVXXXXXXXXXXXXXXXXXXVGDTWFVQCGSEAEAMSTILALRSKTFDGKPIKARLKGENILRSFFPVPIAAA--DAAGGILGFPGAMGSPYMSMAPGGMASGLNGQAAPFTFPGGSYGGRPMGMPQPPMAAPQGRYPPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDAAAXXXXKGGSXXXXXXXXXXXXXXXXXXXXXRAGSKXXXXXXXXXXXXXXXXXXXXRRTASPTPGAAQGGAAQANPNLLSAANFPPLGGAAGEAAEAAXXXXXXXXXXXVPAFGYSGPFTKYKPEEILRIVQGMSADDVAVIGGGVDPLEHTLALEAKADPGVLLRQHSXXXXXXXXXXXXXVSIDEVREQLRRGRPVHREAMLPAGAVDYSTMMFGDG 589          
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Match: A0A8K1FJK8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJK8_PYTOL)

HSP 1 Score: 117 bits (294), Expect = 3.000e-25
Identity = 107/307 (34.85%), Postives = 140/307 (45.60%), Query Frame = 1
Query:    7 KIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXXXXG-------------GMMASARG----------GMQMXXXXXXXXXXXXH------------------------GMGQQMMGMNPN-----------HPQQVRSGADVPEAPAPAAGGLGYPGAF-IQYQPDDILKIVSTLSQSDVAEVPGVADIREHSLAFDADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGE 750
            +++ IF G G   + ++RSDVGDTWFVTM SEDDA+ T+LALR KTF    IKARLKSENLLRSF+P     +V+P  A                  G             G  A+  G          G Q   XXXXXXXXXX                         G GQQ      N             Q V + A+ P  PA     +  P     QY  +DIL+IV  + + D     G  D   HS+A    A+  L+  QR+ SI++ RE +R+GRP+  + +  G++DY + MYGE
Sbjct:  112 EVKAIFEGSG--EVVNVRSDVGDTWFVTMASEDDAVKTLLALRSKTFNNAPIKARLKSENLLRSFYPT---QQVEPVVAASGVSAYARGYYATGPAGGYYDNYGAQYGQQRGAYANGAGNQRNQGGRGQGAQFRQXXXXXXXXXXXXXXXAKSNSFDQQRPASRKAKDKKGKGQQAAAQQQNSGNAKRASGTAERQPVLNSANFPPLPANGEKPVAAPEVIKYQYAHEDILEIVKHMDEDDCKLPEGKMDYEAHSVALTPIAHPDLLRNQRTYSIEQAREAMRQGRPIRSDSI--GSIDYESMMYGE 411          
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Match: T0QP69_SAPDV (HTH La-type RNA-binding domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QP69_SAPDV)

HSP 1 Score: 115 bits (287), Expect = 1.660e-24
Identity = 92/281 (32.74%), Postives = 125/281 (44.48%), Query Frame = 1
Query:    7 KIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFP-----VPTAAEVQPTAAXXXXXXXXXXXXXXXXXXG-----GMMASARGGMQMXXXXXXXXXXXXHGMGQQMMGMNPN--------------HPQQVRSGADVPEAPAPAAGGLGYP-------GAFIQ--YQPDDILKIVSTLSQSDVAEVPGVADIREHSLAFDADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGE 750
            ++  IF G G   + S+RSDVGDTWFVTM +E++A+ T+LALR KTF    IKARLKSENL +SFFP     V  AA    T+A                  G     G     +G                 G      G  P+                 +  S A       P    + +P       GA I   Y  +DI++IV  + ++D     G  D   H+ A   DA+  L+  QR+ SI++ RE LR+GRP+  + V  G+VDY + MYGE
Sbjct:  111 EVEAIFAGCGA--VTSVRSDVGDTWFVTMATEEEAVNTLLALRNKTFNNAPIKARLKSENLFKSFFPQSTPSVDAAASPVTTSAYSVGMYGNAGYYGAPNSYGYAGKDGRPRKGQGNNFRAANGAPARTPSKDGK----KGSTPSAKXXXXXXXXXXXXXTPKKESSAKPKSERQPILNAVNFPPLPTNVGGAAITQAYSHEDIMEIVKNMDETDCVLPAGKMDFEAHAAALTPDAHPDLLRNQRTYSIEQAREALRQGRPIRSDSV--GSVDYESMMYGE 383          
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Match: A0A6G0W682_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W682_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.040e-24
Identity = 94/269 (34.94%), Postives = 123/269 (45.72%), Query Frame = 1
Query:    4 KKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPT--AAEVQPT---AAXXXXXXXXXXXXXXXXXXGGMMASARGGMQMXXXXXXXXXXXXHGM---GQQMM----------GMNPNHPQQVRSGADVPEAPAPAAGGLGYPGAFI--QYQPDDILKIVSTLSQSDVAEVPGVADIREHSLAFDADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGE 750
            K +  IF  DG   + S+RSDVGDTWFVTM SE+ A+ T+LALR K+F    IKARLKSEN+LRSF P  T  AA   PT   A                   G   A    G                G    G++                   Q + + A+ P  P  A      PG  I  +Y  DDI++IV  + ++D     G  D   H  A    A+  L+  QR+ SI++ RE LR+GRP+  + V  G+VDY + MYGE
Sbjct:  107 KVVEAIF--DGCGTVTSVRSDVGDTWFVTMASEEVAVNTLLALRSKSFNDAPIKARLKSENILRSFIPTDTSAAASTSPTPYQATKPYYGNALYYNQAVPNAFGVQYAGRSNGKPNPKVKTPKDASKKAGTPTNGKKSXXXXXXXXXXKAAKNGERQPILNAANFPPLPTVA------PGMEITHKYSHDDIMEIVKHMDEADCTLPEGKMDFVAHEGALTPIAHPDLLKNQRTYSIEQAREALRQGRPIRSDSV--GSVDYESLMYGE 365          
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Match: A0A024TXK9_9STRA (HTH La-type RNA-binding domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXK9_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.370e-24
Identity = 98/285 (34.39%), Postives = 129/285 (45.26%), Query Frame = 1
Query:    4 KKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFP---------------------VPTAAEVQPTAAXXXXXXXXXXXXXXXXXXGGMMASARGGMQMXXXXXXXXXXXXH---------------GMGQQMMGMNPNHPQQVRSGADVPEAPAPAAGGLGYPGAFIQYQPDDILKIVSTLSQSDVAEVPGVADIREHSLAFDADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGE 750
            K +  IF G G   + S+RSDVGDTWFVTM +E+DA+ T+LALR KTF    IKARLKSEN+LRSF P                      P  ++  P A                   G    S  G   M     XXXXXXX                  G +  G +    Q + + A+ P  P  +A G        +Y  DDI++IV  +  +D     G  D   H  A    A+  L+  QR+ SI++ RE LR+GRP+  + V  G+VDY + MYGE
Sbjct:  108 KDVEAIFEGCGT--VASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVLRSFLPESTPSANTTPYQPTNGSIYGNAPYYSQAVPNAFGVQYAGRTPIAKTVKVGKGKKGQSITGAAVMAAPTTXXXXXXXXXXXXXDLSAAATPAAASGPKSAGKHSER-QPILNSANFPPLPLVSANGADI---TYKYSHDDIMEIVKHMDDTDCVLPAGKMDFETHESALTPVAHPDLLKNQRTYSIEQAREALRQGRPIRSDSV--GSVDYESLMYGE 384          
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Match: A0A1V9ZWY9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWY9_9STRA)

HSP 1 Score: 113 bits (282), Expect = 7.320e-24
Identity = 84/271 (31.00%), Postives = 116/271 (42.80%), Query Frame = 1
Query:   10 IREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFP----------VPTAAEVQPTAAXXXXXXXXXXXXXXXXXXGGMMASARGGMQMXXXXXXXXXXXXHGMGQQMM--------------GMNPNHPQQVRSGADVPEAPAPAAGGLGYPGAFIQYQPDDILKIVSTLSQSDVAEVPGVADIREHSLAFDADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGE 750
            +  IF G G   + ++RSDVGDTWFVTM SED+A+ T+L LR KTF    IKARLKSENL +SFFP           P A                                 +G  +              G                        +  Q + +  + P  P P+  G+        Y  DDI++IV  + ++D     G  D   H+ A   DA+  L+  QR+ SI++ RE LR+GRP+  + V  G+VDY + MYGE
Sbjct:  112 VEAIFKGCGA--VTNVRSDVGDTWFVTMASEDEAVKTLLTLRSKTFNNAPIKARLKSENLFKSFFPQSXXXXXXXXXPVATSAYSVGMYGASGYYGAPANYGYAGKENRPRKGQGNFRAQNGSTKDAKDSKKGSTPSSKKNKDXXXXXXXXXXXXXXSERQPILNAVNFP--PLPSTSGV----ITFSYSHDDIMEIVKHMDEADCVLPKGKMDFEAHAAALTPDAHPDLLRNQRTYSIEQAREALRQGRPIRSDSV--GSVDYESMMYGE 372          
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Match: W4GF54_9STRA (HTH La-type RNA-binding domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GF54_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.100e-23
Identity = 89/282 (31.56%), Postives = 125/282 (44.33%), Query Frame = 1
Query:    4 KKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXXXXGGMMASARGGMQMXXXXXXXXXXXXHGMGQ---------------------------------QMMGMNPNHPQQVRSGADVPEAPAPAAGGLGYPGAFIQYQPDDILKIVSTLSQSDVAEVPGVADIREHSLAFDADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGE 750
            K +  IF G G   + S+RSDVGDTWFVTM +E+DA+ T+LALR KTF    IKARLKSEN+LRSF P  +AA   P+A                      + +A G                    +                                 + +G +    Q + + A+ P  P  ++ G        +Y  DDI++IV  +  +DV    G  D   H  A    A+  L+  QR+ SI++ RE LR+GRP+  + V  G+VDY + MYGE
Sbjct:  108 KDVEAIFEGCGT--VASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVLRSFLPDASAA---PSATATPYQPTNGSIYGNTPYYNQAVPNAFGVQYAGRTPLTKPVKAAKAASKXXXXXXXXXXXXXXXXXXXXXXXXKDVSTAPASKSVGKHSER-QPILNSANFPPLPLTSSNGADI---TYKYSHDDIMEIVKHMDDTDVLLPAGKMDFETHESALTPVAHPDLLKNQRTYSIEQAREALRQGRPIRSDSV--GSVDYESLMYGE 378          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18276.5665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL21_ECTSI1.730e-17374.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRS0_9PHAE5.330e-10148.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9Z8Y3_9STRA1.510e-2734.08HTH La-type RNA-binding domain-containing protein ... [more]
A0A836CN94_9STRA5.090e-2628.24HTH La-type RNA-binding domain-containing protein ... [more]
A0A8K1FJK8_PYTOL3.000e-2534.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
T0QP69_SAPDV1.660e-2432.74HTH La-type RNA-binding domain-containing protein ... [more]
A0A6G0W682_9STRA2.040e-2434.94HTH La-type RNA-binding domain-containing protein ... [more]
A0A024TXK9_9STRA2.370e-2434.39HTH La-type RNA-binding domain-containing protein ... [more]
A0A1V9ZWY9_9STRA7.320e-2431.00Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4GF54_9STRA1.100e-2331.56HTH La-type RNA-binding domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18276contigEcto-sp13_S_contig18276:125..3120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score520.4
Seed ortholog evalue7.3e-145
Seed eggNOG ortholog2880.D8LL21
Model size1170
KEGG koko:K15322,ko:K18757,ko:K18763
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.positive regulation of translation
EggNOG OGsKOG2591@1,KOG2591@2759
EC3.1.27.9
Cds size1170
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.3524032-CDS-Ecto-sp13_S_contig18276:124..4041681462941.3524032-CDS-Ecto-sp13_S_contig18276:124..404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18276 125..404 +
1681462941.3632457-CDS-Ecto-sp13_S_contig18276:653..8091681462941.3632457-CDS-Ecto-sp13_S_contig18276:653..809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18276 654..809 +
1681462941.3734126-CDS-Ecto-sp13_S_contig18276:1978..24671681462941.3734126-CDS-Ecto-sp13_S_contig18276:1978..2467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18276 1979..2467 +
1681462941.3855157-CDS-Ecto-sp13_S_contig18276:2875..31201681462941.3855157-CDS-Ecto-sp13_S_contig18276:2875..3120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18276 2876..3120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18276.5665.1prot_Ecto-sp13_S_contig18276.5665.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18276 125..3120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18276.5665.1

>prot_Ecto-sp13_S_contig18276.5665.1 ID=prot_Ecto-sp13_S_contig18276.5665.1|Name=mRNA_Ecto-sp13_S_contig18276.5665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=390bp
KKKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFE
GKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAAAAAPYGMGAGGGGRGG
GMMASARGGMQMGGMGGGMHQGQQHGMGQQMMGMNPNHPQQVRSGADVPE
APAPAAGGLGYPGAFIQYQPDDILKIVSTLSQSDVAEVPGVADIREHSLA
FDADANLGLMMRQRSVSIDECREQLRKGRPVHREGVIAGAVDYGTYMYGE
GHDPQQQAGSALRGEGYGGGGAAGESKKKSDKSRREKGADRPSSDDSKAR
GGEEKPGRADPAAATAGAKSKDASKDSGAAGGKGKGSGTATAAAGGGAGE
GAPPRPTRGWEKPEFTQQKQRGLSAGSDAGNRGGKVASAK
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mRNA from alignment at Ecto-sp13_S_contig18276:125..3120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18276.5665.1 ID=mRNA_Ecto-sp13_S_contig18276.5665.1|Name=mRNA_Ecto-sp13_S_contig18276.5665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18276:125..3120+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAAAAAGATCCGAGAGATCTTCACCGGTGACGGGGTCGCGCCGATCAA GTCCATCCGCAGCGACGTCGGTGACACCTGGTTCGTGACGATGGAATCGG AGGACGATGCCCTCACCACCATCCTCGCCCTCCGGGGCAAGACCTTCGAG GGCAAGGCCATCAAGGCCCGCCTCAAGAGCGAGAACCTACTGCGATCCTT CTTCCCGGTGCCGACGGCGGCGGAGGTGCAGCCCACCGCCGCCGCCGCCG CCGCCGCCGCGCCGTATGGCATGGGCGCCGGTGCCGGGGCCGGGATGCCC GGCGGGATCCCGTACGGCATGATGAACGGGATGGGCGCGCCCATGATGAA CGGGCAGCCGAACTACGGCTACTCCGGGCCCGGAGCCAGGGGCGGGATGT ACGGCCGCGGCGGCATGATGATGCAGCAGCAGCAGCCGGGCGGGGCTGGC GGCGGCGGCGGAGCTGGTGGCATGCGCTTCGGGGGGGGCATGCAGCAACA GCAGCACGTGGGGATGGTGCAGGGAGGAGGGGGTGGTGGTCGGGGGGGCG GAATGATGGCGAGCGCGAGAGGGGGGATGCAGATGGGGGGCATGGGTGGC GGCATGCACCAGGGGCAGCAGCACGGCATGGGCCAGCAGATGATGGGGAT GAACCCGAATCACCCGCAGCAGGTCCGGTCTGGCGGTCGGGGTTAATTTA TTTAAAACGTGAAGAGTTATTTTGTACTCGGTGGTATCCTGTTGGTTATT TCGATCTTCCGTGAGTCCCTGAGAGCCCGGAAATGTGACCGCCCATCGAA AGGCATCTTTGTCCTCAGCCCGGTGTCTGTTTGTGTTTTTCTCAGTTATA ACACGAGCCCGGTGTCGTTGTTTTTAGCACTGTTGAGAAGGCTGCCTGCG AAATGACCGTTCACGTGATGAAGATATTGAGCAGGACTGCTGTCACAACG CCAACTTGGCAGGAATGATCATGTGTGTATATCTTTCGCTGCTTTGCTTC GATTGCTGTTTTTCCGTCAGTGCTGTGTGGCTGTGTCTGGAAGGCGTTTT TTTTTGTGTGTCTTGCCCTTGCGGCGAAGTCGTACCGGTTCCGGGTGGGT ACCTCGATCGAGGGCTGAAATAAGCCTGTGTCTTTCCTCATCTGCACGAT TGGTATGCTCTCGCGTCGCCGTCCTCACTCTTGCGACCGCCAGCGCGACT TGGTGTTACGAGTGCACGGTGGTAGGTACCACGCCCGGTGTATCACGCTT GCCGTGGCGTGATACCCCTTCCTGCGCTACATCAGCTACTCATGTGTCCC CGCTTGCCTCTCGCCGCTTGCTCCTCACACACAACAGCTCCAGCAGCAGC AGCAGCAGCAGCCGCAAGCACGGCATCATCACCACCAGCAGCAACAACAG CCGCAGGCAAACGGCGGGCGTGGGGAGAAGAAGGGATCGCGAGACCGCGA CCACAGTATGCAGCAGCAGCAGGGAGGAGGGTATGGGGGAGCCAACGGGA GCGCGGGCGCCCCATACTCGGGTCAGCACCAACGAGACGGAGGGGGGCGA GGAGGAGGTGGCGGCGGTGGCGACCGCCCAAAAAAGGGCGACCGGGGAAA CTCCGCGCAGCAGGGACGCGGCGGGAAGTCTTCAGCGGCGTCTCGGGGGT CCGGGGGGCGCGACATGCTCAGTGCGGCGAACTTCCCGCCCCTGCCGGGG ACGGACGGCGGCGGCGGCGGCGCCACGGCCGGATCGACGCCGGCCACGTC GCCGGCTTCGTCGGCAGCGGCGGCGGATGCCGAGCAGGCGGCGGGGGCCG CGTCTACCGATGACATCGTAACAAACGGCGAGGCGGATGCGTCGTCTCCT TCAGCGGATGTCCCCGAGGCGCCGGCGCCGGCGGCGGGTGGGCTCGGTTA TCCTGGCGCCTTCATCCAGTACCAGCCTGACGACATCCTCAAGATCGTGT CGACGCTGTCTCAGTCGGACGTGGCCGAGGTACCCGGAGTCGCGGACATC CGCGAGCACTCGCTGGCCTTCGACGCGGACGCGAACCTGGGGCTGATGAT GCGCCAGCGGTCCGTGTCGATCGACGAGTGCCGGGAGCAGCTCCGCAAGG GGCGACCGGTGCACCGCGAGGGGGTTATCGCCGGGGCCGTCGACTACGGC ACCTACATGTACGGGGAGGGTCACGACCCGCAGCAGCAGGCGGGGTCCGC CCTAAGAGGAGAGGGTTACGGGGGGGGAGGAGCGGCGGGCGAGAGCAAGA AGAAATCGGACAAGAGTCGGAGGGAAAAGGGGGCGGATAGACCATCGTCC GATGACAGCAAGGCAAGGGGGGGCGAGGAGAAGCCCGGGAGAGGTAAGAG TGCGGCAACAACGACGTCTTCCGCACCAGCCGCGAAGGAACCCATGGGCG CGTACGCGGCAGCCCTGCTGAAGAATCCCCGGCCGGTCCAGCAGCCGCAG CAGGCGGCGGCGGCGGCGGCGGCTGCTGCTAGCACTACCGCCAAGCCTCC GTCAACGACCTCCTCCTCCTCATCTTCCTCTTCCAAGCCGTCGTCGGCCA AGCCCTCCGGCAAGGAAAGGAAGGGCGATAAGGGTAAGGAAACTAGCAGC AGCAGCAGTAGCGGAGCGAGTGCCGGGGCGCCGGGGCCTGCCGGCGGCGG CGGCGGCGGCGGCGGCGGCGCGCCTTCGACGAAGTCCCCACGAGCCAAGA GCTCCGCCGCTGCTACCGCCACCCCCGAGGACCCGGCGGCGGTGGCGGCA GCAGACCCCGCCGCTGCTACCGCTGGGGCGAAGAGCAAAGACGCGTCCAA GGATAGCGGTGCGGCGGGCGGGAAGGGGAAGGGGAGCGGAACTGCGACGG CGGCGGCGGGAGGAGGGGCGGGCGAAGGGGCGCCGCCACGGCCAACACGG GGCTGGGAAAAGCCCGAGTTTACCCAGCAGAAGCAGCGGGGGTTGAGTGC GGGCAGCGACGCGGGCAACAGAGGGGGCAAGGTCGCGTCGGCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18276:125..3120+

>mRNA_Ecto-sp13_S_contig18276.5665.1 ID=mRNA_Ecto-sp13_S_contig18276.5665.1|Name=mRNA_Ecto-sp13_S_contig18276.5665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1170bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18276:125..3120+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAAAAAGATCCGAGAGATCTTCACCGGTGACGGGGTCGCGCCGATCAA
GTCCATCCGCAGCGACGTCGGTGACACCTGGTTCGTGACGATGGAATCGG
AGGACGATGCCCTCACCACCATCCTCGCCCTCCGGGGCAAGACCTTCGAG
GGCAAGGCCATCAAGGCCCGCCTCAAGAGCGAGAACCTACTGCGATCCTT
CTTCCCGGTGCCGACGGCGGCGGAGGTGCAGCCCACCGCCGCCGCCGCCG
CCGCCGCCGCGCCGTATGGCATGGGCGCCGGGGGTGGTGGTCGGGGGGGC
GGAATGATGGCGAGCGCGAGAGGGGGGATGCAGATGGGGGGCATGGGTGG
CGGCATGCACCAGGGGCAGCAGCACGGCATGGGCCAGCAGATGATGGGGA
TGAACCCGAATCACCCGCAGCAGGTCCGGTCTGGCGCGGATGTCCCCGAG
GCGCCGGCGCCGGCGGCGGGTGGGCTCGGTTATCCTGGCGCCTTCATCCA
GTACCAGCCTGACGACATCCTCAAGATCGTGTCGACGCTGTCTCAGTCGG
ACGTGGCCGAGGTACCCGGAGTCGCGGACATCCGCGAGCACTCGCTGGCC
TTCGACGCGGACGCGAACCTGGGGCTGATGATGCGCCAGCGGTCCGTGTC
GATCGACGAGTGCCGGGAGCAGCTCCGCAAGGGGCGACCGGTGCACCGCG
AGGGGGTTATCGCCGGGGCCGTCGACTACGGCACCTACATGTACGGGGAG
GGTCACGACCCGCAGCAGCAGGCGGGGTCCGCCCTAAGAGGAGAGGGTTA
CGGGGGGGGAGGAGCGGCGGGCGAGAGCAAGAAGAAATCGGACAAGAGTC
GGAGGGAAAAGGGGGCGGATAGACCATCGTCCGATGACAGCAAGGCAAGG
GGGGGCGAGGAGAAGCCCGGGAGAGCAGACCCCGCCGCTGCTACCGCTGG
GGCGAAGAGCAAAGACGCGTCCAAGGATAGCGGTGCGGCGGGCGGGAAGG
GGAAGGGGAGCGGAACTGCGACGGCGGCGGCGGGAGGAGGGGCGGGCGAA
GGGGCGCCGCCACGGCCAACACGGGGCTGGGAAAAGCCCGAGTTTACCCA
GCAGAAGCAGCGGGGGTTGAGTGCGGGCAGCGACGCGGGCAACAGAGGGG
GCAAGGTCGCGTCGGCCAAG
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