mRNA_Ecto-sp13_S_contig18265.5663.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18265.5663.1
Unique NamemRNA_Ecto-sp13_S_contig18265.5663.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18265.5663.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 8.910e-69
Identity = 113/177 (63.84%), Postives = 139/177 (78.53%), Query Frame = 1
Query:   52 VSKEQEAVLKSHDPARAMLLLFVKVFIVSHLLAHRLGEASDVRMFFQVCGHALFPRTKLYHTMIKHCITELYRVTVARFSDQLKSAVTGGGGPVLHANFDLWTSKTSREKYIGLRIFWATPKFALESALIAVKLFRPSAELSQSTQLSEVLLLWVQEVLAEFGLSTTDLFSTVTDSG 582
            VSK +EAV+KS DP R MLL++VKVFI+SHLLA  L ++ DVR FF+VC    FP++ LY  MIKH + ELY  TV++FS  ++ A+TG GG VLHANFDLWTSK S EKYIGLR+FW T  F L+SAL+AVKLF+PSA+L+ S QLS++LL+WVQEVL EFGL T  LF TVTD+G
Sbjct:  152 VSKHKEAVMKSSDPGRVMLLMYVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVVELYDATVSKFSYSIRKAITGAGGAVLHANFDLWTSKWSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSKQLSDILLIWVQEVLKEFGLDTNHLFCTVTDAG 328          
BLAST of mRNA_Ecto-sp13_S_contig18265.5663.1 vs. uniprot
Match: A0A0N7L827_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L827_PLAHL)

HSP 1 Score: 94.7 bits (234), Expect = 3.770e-19
Identity = 58/180 (32.22%), Postives = 95/180 (52.78%), Query Frame = 1
Query:   52 VSKEQEAVLKSHDPARAMLLLFVKVFIVSHLLAHRLGEASDVRMFFQVCGHAL---FPRTKLYHTMIKHCITELYRVTVARFSDQLKSAVTGGGGPVLHANFDLWTSKTSREKYIGLRIFWATPKFALESALIAVKLFRPSAELSQSTQLSEVLLLWVQEVLAEFGLSTTDLFSTVTDSG 582
            V+  + + L  +DP R   +L+  + ++  LL     E   V+ F +  G  +    P  K  H    H I ++Y  T   F   L+        P+ H N DLWTSKTS++KY+G+RI +   ++ ++ +++A+K F P +   +S +LSEVL  WV +VLAEFG   +D+  + +D G
Sbjct:   29 VNATKASALFKNDPKRFYEMLWTHL-VIPKLLPLGFCENDKVQHFVKCSGSPIGKHLPTRKRLH----HLIFKVYHATKEGFRTDLRKIKASCPLPIFHLNVDLWTSKTSKDKYVGIRIIFVDAQWRMDISILAIKRFCPGSAKYKSFRLSEVLHSWVIDVLAEFGFLPSDIAGSTSDGG 203          
BLAST of mRNA_Ecto-sp13_S_contig18265.5663.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.760e-17
Identity = 51/156 (32.69%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  115 FVKVFIVSHLLAHRLGEASDVRMFFQVCGHALFPRTKLYHTMIKHCITELYRVTVARFSDQLKSAVTGGGGPVLHANFDLWTSKTSREKYIGLRIFWATPKFALESALIAVKLFRPSAELSQSTQLSEVLLLWVQEVLAEFGLSTTDLFSTVTDSG 582
            +VK  ++        GE   VR          FP  +L+   +   + E Y  T A+F  ++ + V  GG P LH + DLW  K+S   ++G+R+F+   ++ L+S L+AV+ F P+ E+ ++ +LS VL  ++ +VL EFGL  + LFS  +D+G
Sbjct:    3 WVKWHVIEGFCPLSYGEKRWVRESLNQIAAKGFPLGRLHKEAVAKMVVEYYAATTAQFQAEITAEV--GGVPRLHLDLDLWVDKSSTLMFMGVRLFYIDREWRLKSRLLAVRQFNPTLEMFENERLSAVLEKYLTDVLEEFGLDVSMLFSATSDAG 156          
BLAST of mRNA_Ecto-sp13_S_contig18265.5663.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.140e-15
Identity = 58/177 (32.77%), Postives = 83/177 (46.89%), Query Frame = 1
Query:   67 EAVLKSHDPARAMLLLFVKVFIVSHLLAHRLGEASDVRMFFQ-VCGHALFPRTKLYH--TMIKHCITELYRVTVARFSDQLKSAVTGGGGPVLHANFDLWTSKTSREKYIGLRIFWATPKFALESALIAVKLFRPS--AELSQSTQLSEVLLLWVQEVLAEFGLSTTDLFSTVTDSG 582
            E+ +   DP+R   L F K FI+    A  L +   VR     +C   L          T IK  I E+Y  T   F+ +L   V     P+L+ N DLWTS+ S EKYIG+R+ +      ++S ++ VKLFRP     +        V+L W  +VL + GL   +    V+DSG
Sbjct:  195 ESAVYKDDPSRYNCLQFTKAFIIHAGCAFSLADHDRVRRCLATMCPDHLDVAAINARGATCIKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIGVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSG 371          
BLAST of mRNA_Ecto-sp13_S_contig18265.5663.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.140e-15
Identity = 58/177 (32.77%), Postives = 83/177 (46.89%), Query Frame = 1
Query:   67 EAVLKSHDPARAMLLLFVKVFIVSHLLAHRLGEASDVRMFFQ-VCGHALFPRTKLYH--TMIKHCITELYRVTVARFSDQLKSAVTGGGGPVLHANFDLWTSKTSREKYIGLRIFWATPKFALESALIAVKLFRPS--AELSQSTQLSEVLLLWVQEVLAEFGLSTTDLFSTVTDSG 582
            E+ +   DP+R   L F K FI+    A  L +   VR     +C   L          T IK  I E+Y  T   F+ +L   V     P+L+ N DLWTS+ S EKYIG+R+ +      ++S ++ VKLFRP     +        V+L W  +VL + GL   +    V+DSG
Sbjct:  116 ESAVYKDDPSRYNCLQFTKAFIIHAGCAFSLADHDRVRRCLATMCPDHLDVAAINARGATCIKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIGVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSG 292          
BLAST of mRNA_Ecto-sp13_S_contig18265.5663.1 vs. uniprot
Match: A0A662WPY4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPY4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.470e-9
Identity = 44/165 (26.67%), Postives = 77/165 (46.67%), Query Frame = 1
Query:   88 DPARAMLLLFVKVFIVSHLLAHRLGEASDVRMFFQVCGHALFPRTKLYHTMIKHCITELYRVTVARFSDQLKSAVTGGGGPVLHANFDLWTSKTSREKYIGLRIFWATPKFALESALIAVKLFRPSAELSQSTQLSEVLLLWVQEVLAEFGLSTTDLFSTVTDSG 582
            DP R  +LL   + IV++ L    GE ++      +       R  +   +++H + ELY  T  +   +L +A   G         D WTSK+ +EKY+GLRI+    +F  +S L+  + F P     +   +      W+ ++L +FG+   D+F + +D G
Sbjct:  151 DPGRVYVLLET-LRIVNNNLPFAFGEFAETLAIRDLAVKQEM-RAAINANVVRHAVVELYTSTKRQVESEL-AACRIGSAKCFSIVGDFWTSKSKKEKYLGLRIYMVDKEFQFKSILLGTRHFAPLYS-ERDGGIRGPFQRWLGDILTDFGIRRCDIFGSTSDGG 311          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18265.5663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE8.910e-6963.84Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A0N7L827_PLAHL3.770e-1932.22Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
D8LBK4_ECTSI2.760e-1732.69Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L6Z1_9PHAE1.140e-1532.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE1.140e-1532.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A662WPY4_9STRA3.470e-926.67Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18265contigEcto-sp13_S_contig18265:2100..2893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score87.8
Seed ortholog evalue6e-15
Seed eggNOG ortholog2880.D7G3L2
Model size582
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CZK4@1,2SARG@2759
Cds size582
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.176824-CDS-Ecto-sp13_S_contig18265:2099..22931681462941.176824-CDS-Ecto-sp13_S_contig18265:2099..2293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18265 2100..2293 -
1681462941.191505-CDS-Ecto-sp13_S_contig18265:2505..28931681462941.191505-CDS-Ecto-sp13_S_contig18265:2505..2893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18265 2506..2893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18265.5663.1prot_Ecto-sp13_S_contig18265.5663.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18265 2100..2893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18265.5663.1

>prot_Ecto-sp13_S_contig18265.5663.1 ID=prot_Ecto-sp13_S_contig18265.5663.1|Name=mRNA_Ecto-sp13_S_contig18265.5663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
SSKTKARHSNAAKHQAAVSKEQEAVLKSHDPARAMLLLFVKVFIVSHLLA
HRLGEASDVRMFFQVCGHALFPRTKLYHTMIKHCITELYRVTVARFSDQL
KSAVTGGGGPVLHANFDLWTSKTSREKYIGLRIFWATPKFALESALIAVK
LFRPSAELSQSTQLSEVLLLWVQEVLAEFGLSTTDLFSTVTDSG
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mRNA from alignment at Ecto-sp13_S_contig18265:2100..2893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18265.5663.1 ID=mRNA_Ecto-sp13_S_contig18265.5663.1|Name=mRNA_Ecto-sp13_S_contig18265.5663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=794bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18265:2100..2893- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAGCAAGACAAAGGCAAGGCACAGCAACGCCGCCAAACACCAGGCGGC AGTGAGCAAGGAGCAGGAGGCGGTGTTGAAAAGCCACGATCCCGCTCGTG CCATGCTGCTGCTGTTCGTGAAAGTTTTCATCGTTTCGCATCTGCTTGCC CACAGGCTCGGCGAGGCCAGCGACGTCCGCATGTTCTTCCAGGTATGCGG CCATGCTCTCTTCCCGCGGACCAAGTTGTACCACACGATGATCAAGCACT GCATCACGGAGTTGTACCGGGTCACGGTGGCACGTTTTTCAGATCAGCTG AAAAGCGCGGTTACCGGTGGTGGAGGCCCTGTACTTCACGCCAACTTCGA TCTCTGGACAAGCAAAACGTCGCGCGAGAAGTACATAGGTAAACCTGCGG TACTTTGTTGCGTGGTCGGGATGAGCCATAATTTGTTTGTTGTTCGTACT ACAAGTATCTTATCTATGTGTTTGGTTCGGTTGCATCCGTGCACTTCAGG TGTTTATGTTAACCGCGAAATCATTTTTGTTTATTAACCCTAACTCAATG TCCTGCGCAAACCCATATTTGTTCCGTGTGCCGTGCGTGCTCTGCAACAG GCCTGCGGATTTTCTGGGCTACTCCAAAGTTCGCGCTCGAGTCTGCCCTC ATCGCCGTCAAGCTCTTCCGCCCTTCGGCCGAGCTGTCGCAGAGTACGCA GCTCTCGGAAGTCCTTCTTCTCTGGGTCCAGGAGGTGTTGGCGGAGTTCG GACTGTCAACCACCGACCTCTTCAGCACCGTCACCGACTCAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18265:2100..2893-

>mRNA_Ecto-sp13_S_contig18265.5663.1 ID=mRNA_Ecto-sp13_S_contig18265.5663.1|Name=mRNA_Ecto-sp13_S_contig18265.5663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18265:2100..2893- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAGCAAGACAAAGGCAAGGCACAGCAACGCCGCCAAACACCAGGCGGC
AGTGAGCAAGGAGCAGGAGGCGGTGTTGAAAAGCCACGATCCCGCTCGTG
CCATGCTGCTGCTGTTCGTGAAAGTTTTCATCGTTTCGCATCTGCTTGCC
CACAGGCTCGGCGAGGCCAGCGACGTCCGCATGTTCTTCCAGGTATGCGG
CCATGCTCTCTTCCCGCGGACCAAGTTGTACCACACGATGATCAAGCACT
GCATCACGGAGTTGTACCGGGTCACGGTGGCACGTTTTTCAGATCAGCTG
AAAAGCGCGGTTACCGGTGGTGGAGGCCCTGTACTTCACGCCAACTTCGA
TCTCTGGACAAGCAAAACGTCGCGCGAGAAGTACATAGGCCTGCGGATTT
TCTGGGCTACTCCAAAGTTCGCGCTCGAGTCTGCCCTCATCGCCGTCAAG
CTCTTCCGCCCTTCGGCCGAGCTGTCGCAGAGTACGCAGCTCTCGGAAGT
CCTTCTTCTCTGGGTCCAGGAGGTGTTGGCGGAGTTCGGACTGTCAACCA
CCGACCTCTTCAGCACCGTCACCGACTCAGGC
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