mRNA_Ecto-sp13_S_contig18261.5662.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18261.5662.1
Unique NamemRNA_Ecto-sp13_S_contig18261.5662.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18261.5662.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 6.720e-52
Identity = 88/96 (91.67%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:   91 MSCSFCDCPEGWEGVDCGRCSSVSVCPDKIVNGTLVSATNCSSSSLIPTDEESQQENGKVFSCSCGGGGDAFTDALCGLQPDTWVEFTIKGSGTAE 378
            MSCSFCDCPEGWEGVDCGRCSSVSVCPDK +NGTLVSATNCSSSSLIPT EESQQENGKV SCS GGGGDAFT AL  LQPDTWVEFTIKGSGTAE
Sbjct:    1 MSCSFCDCPEGWEGVDCGRCSSVSVCPDKTINGTLVSATNCSSSSLIPTAEESQQENGKVLSCSLGGGGDAFTAALRELQPDTWVEFTIKGSGTAE 96
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BLAST of mRNA_Ecto-sp13_S_contig18261.5662.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.590e-41
Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = 1 
Query:    7 ACPNAFLYENPVCVNNGTLHIGDRTAGEMSCSFCDCPEGWEGVDCGRCSSVSVCPDKIVNGTLVSATNCSSSSLIPTDEESQQENGKVFSCSCGGGGDAFTDALCGLQPDTWVEFTIKGSGTAE 378
            AC NA+ Y +P C  N TL+ G     ++SC+ C C +GW GVDCGRC  VSVCP   V+G + +ATNCS+++L+ T+EE++ E GK+FSCSCGGG D +TD LC  QPDTW+++ + G GT E
Sbjct:   41 ACTNAYDYGDPTCFGNSTLYWGTGNHTDLSCAHCVCEDGWAGVDCGRCLDVSVCPSSTVDGQVAAATNCSANTLLLTEEEARSEAGKIFSCSCGGGEDGWTDFLCDQQPDTWIQWAVTGGGTEE 164
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BLAST of mRNA_Ecto-sp13_S_contig18261.5662.1 vs. uniprot
Match: A0A6H5KT00_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT00_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.480e-31
Identity = 62/74 (83.78%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:  169 PDKIVNGT----LVSATNCSSSSLIPTDEESQQENGKVFSCSCGGGGDAFTDALCGLQPDTWVEFTIKGSGTAE 378
            P  + NG     L+ ATNCSSSSLIPTDEESQQENGKVFSCSCGGGGDAFTDALCGLQP+TWVEFTIKGSGTAE
Sbjct:   13 PPPLFNGRHPPKLLPATNCSSSSLIPTDEESQQENGKVFSCSCGGGGDAFTDALCGLQPETWVEFTIKGSGTAE 86
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BLAST of mRNA_Ecto-sp13_S_contig18261.5662.1 vs. uniprot
Match: A0A7R9U018_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9U018_9VIRI)

HSP 1 Score: 85.1 bits (209), Expect = 9.990e-17
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:   10 CPNAFLYENPVCVNNGTLHIGDRTAGEMSCSFCDCPEG--WEGVDCGRCSSVSVCPDKIVNGTLVSATNCSSSSLIPTDEESQQENGKVFSCSCGG 291
            C NA     P C++ GTL   D ++   +C+ C CP G  W G DC  C   S CP+   +GT   ATNC+S +L+PT+EE   E GK  SC CGG
Sbjct:   42 CANAMKVGKPACLHGGTLVSTDSSSSSENCASCKCPAGGGWRGPDCSVCVDASACPES-PDGTA--ATNCTSDTLLPTEEELASEGGKRLSCVCGG 134
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BLAST of mRNA_Ecto-sp13_S_contig18261.5662.1 vs. uniprot
Match: A0A7S0CS44_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CS44_MICPS)

HSP 1 Score: 72.4 bits (176), Expect = 2.360e-12
Identity = 39/91 (42.86%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:  112 CPEGWEGVDCGRCSSVSVCPDKIV-NGTLVSATNCSSSSLIPTDEESQQ--------ENGKVFSCSCGGGGDAFTDALCGLQPDTWVEFTI 357
            CP GW GVDC  C +   CPD +  +G+   A  C+++ L+PT EE+          E+GKVFSC CGG  DA TD  C  Q DT   F +
Sbjct:   77 CPVGWAGVDCSACQTRDACPDIVAKDGSRKKAVACTNACLVPTAEETSLPSPFGATWEDGKVFSCRCGG--DARTDPYCQFQKDTTFLFHV 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18261.5662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LNV5_ECTSI6.720e-5291.67ATP-binding cassette superfamily n=1 Tax=Ectocarpu... [more]
A0A6H5KKD9_9PHAE1.590e-4152.42ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5KT00_9PHAE1.480e-3183.78ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
A0A7R9U018_9VIRI9.990e-1743.75Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S0CS44_MICPS2.360e-1242.86Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18261contigEcto-sp13_S_contig18261:1959..2970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size378
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.1133928-UTR-Ecto-sp13_S_contig18261:1958..19661681462941.1133928-UTR-Ecto-sp13_S_contig18261:1958..1966Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18261 1959..1966 +
1681462941.1434593-UTR-Ecto-sp13_S_contig18261:2903..29701681462941.1434593-UTR-Ecto-sp13_S_contig18261:2903..2970Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18261 2904..2970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.1241357-CDS-Ecto-sp13_S_contig18261:1966..21501681462941.1241357-CDS-Ecto-sp13_S_contig18261:1966..2150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18261 1967..2150 +
1681462941.1335378-CDS-Ecto-sp13_S_contig18261:2784..29031681462941.1335378-CDS-Ecto-sp13_S_contig18261:2784..2903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18261 2785..2903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18261.5662.1prot_Ecto-sp13_S_contig18261.5662.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18261 1967..2903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18261.5662.1

>prot_Ecto-sp13_S_contig18261.5662.1 ID=prot_Ecto-sp13_S_contig18261.5662.1|Name=mRNA_Ecto-sp13_S_contig18261.5662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MPERLSVREPRLRKQRHSPHRRQDCGRNELLLLRLSGGMGRGRLRAVLQR
FCLSGQDCQRNPCVGDQLQLLLSHSHGRGVSTRERKSFLLFVRWWRRCLH
*
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mRNA from alignment at Ecto-sp13_S_contig18261:1959..2970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18261.5662.1 ID=mRNA_Ecto-sp13_S_contig18261.5662.1|Name=mRNA_Ecto-sp13_S_contig18261.5662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1012bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18261:1959..2970+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAATTAGCATGCCCGAACGCCTTTCTGTACGAGAACCCCGTCTGCGTAAA
CAACGGCACTCTCCACATCGGCGACAGGACTGCGGGAGAAATGAGCTGCT
CCTTCTGCGACTGTCCGGAGGGATGGGAAGGGGTCGACTGCGGGCGGTGC
TCCAGCGTTTCTGTCTGTCCGGACAAGATTGTCAACGGAACCGTGAGATT
TTTTGGTATTGTTACTGTCTATCGGTAAGAAACACATGGGGTGAGGAACA
ACTCCCTTTTTATTTCGCTAGACGTGATACGTGCTTGCCGTTAACGCTAT
CCGCTTAGGTAAAGACATGGCTGCAAATGCCTCTCTGATTTGTTACTAGT
AGACGAAGCGCCATAAGTGTTTGCCGTTTACCTGAGACAGACGATTGGCG
ATGATGATGCTGGTGGTCAATGTACCTGGACATACCTCCCCCAGAACTCT
GTGGCTTCTTCGAATAAATTTCTTCGTATCCCTCGGTCCTTGAGGCCTTT
GTATGTCTTGCTGTAAAAACTGGAGCTGGGGTAGCGAAATCGTTTGTTGA
GCTTGAGGACGTCAGAGGTCTCTCTACATGACGGAAAGGAACAACACTCA
TTTATTTCAACATATTCGTTGTCAACTAGTCACAACGCAAGCAAAACACC
AGCACGTACATTTCTTACGCCCACCATCCCATCCCCCCCCCCCCCTCCGT
TGACTGTTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACCGCTGAA
GGCATGCAAAACATTAGTACCTTCCCCCCCCCCCTCCCTCCCCTCCCCCC
CCCTTTAATCGGCGTCACCCCCGAAGCTTGTGTCGGCGACCAACTGCAGC
TCCTCCTCTCTCATTCCCACGGACGAGGAGTCTCAACAAGAGAACGGAAA
AGTTTTCTCCTGTTCGTGCGGTGGTGGCGGCGATGCCTTCACTGATGCCC
TGTGCGGGTTGCAGCCGGACACGTGGGTGGAGTTCACTATCAAGGGGTCT
GGGACGGCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18261:1959..2970+

>mRNA_Ecto-sp13_S_contig18261.5662.1 ID=mRNA_Ecto-sp13_S_contig18261.5662.1|Name=mRNA_Ecto-sp13_S_contig18261.5662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18261:1959..2970+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGAACGCCTTTCTGTACGAGAACCCCGTCTGCGTAAACAACGGCA
CTCTCCACATCGGCGACAGGACTGCGGGAGAAATGAGCTGCTCCTTCTGC
GACTGTCCGGAGGGATGGGAAGGGGTCGACTGCGGGCGGTGCTCCAGCGT
TTCTGTCTGTCCGGACAAGATTGTCAACGGAACCCTTGTGTCGGCGACCA
ACTGCAGCTCCTCCTCTCTCATTCCCACGGACGAGGAGTCTCAACAAGAG
AACGGAAAAGTTTTCTCCTGTTCGTGCGGTGGTGGCGGCGATGCCTTCAC
TGA
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