mRNA_Ecto-sp13_S_contig18257.5659.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18257.5659.1
Unique NamemRNA_Ecto-sp13_S_contig18257.5659.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Match: D8LTR7_ECTSI (3-ketoacyl-CoA synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR7_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 5.170e-58
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVS 300
            NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAG+DAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKV+
Sbjct:  287 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGKDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVT 386
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BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Match: A0A835YTW0_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW0_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.520e-37
Identity = 66/97 (68.04%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALR 291
            NTLFR GGAAI+LSNKWQDA R+KFKLL T+RTQG G DA+E V+E ED+LG+ GVRLSK+IV+VAG+AM+ NFT+LGP+VLP+SEQ   +K+ A +
Sbjct:  299 NTLFRCGGAAIVLSNKWQDAMRAKFKLLTTIRTQGEGLDAYECVFECEDDLGHRGVRLSKQIVEVAGKAMQDNFTALGPHVLPLSEQIPTIKSYAAK 395
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BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Match: A0A7S2A0B6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A0B6_TRICV)

HSP 1 Score: 134 bits (337), Expect = 4.530e-37
Identity = 64/99 (64.65%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKV 297
            NTLFR GGAA++LSNKW D  R+ +KLL+TVR QGAG DA++ V+E++D  G  GVRLSKEIVKVAG+ MEKN T +GPYVLP++EQ+KVV +L  R V
Sbjct:   30 NTLFRCGGAAMVLSNKWTDGRRAWYKLLHTVRVQGAGEDAYQCVFEAQDKDGKRGVRLSKEIVKVAGKCMEKNMTMIGPYVLPLTEQFKVVLSLLARFV 128
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BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Match: A0A482RY66_9ARCH (FAE domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY66_9ARCH)

HSP 1 Score: 133 bits (334), Expect = 2.390e-36
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVS 300
            NTLFR GGAA+LLSNKW DA R++FKLL  +RTQ  G D+F  VYE+ED+    GVRLSK+IVK AGRAMEKNFT+LGPYVLP+SEQ K V ++  R +S
Sbjct:  115 NTLFRCGGAAVLLSNKWTDALRARFKLLKVIRTQYVGEDSFGCVYETEDSDHRRGVRLSKDIVKTAGRAMEKNFTALGPYVLPLSEQAKTVFSMLWRTLS 214
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BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Match: A0A6U6FA53_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FA53_9STRA)

HSP 1 Score: 132 bits (331), Expect = 7.250e-36
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALR 291
            NTLFRVGGAAI+LSNKW D  R+ +KLL+TVR QG+   A  AVYE+ D  GN GVRLSK+IVKVAG+ MEKN T++GPYVLP++EQ KVV +LA R
Sbjct:  118 NTLFRVGGAAIVLSNKWTDGRRAWYKLLHTVRVQGSSDAALNAVYETADGSGNRGVRLSKDIVKVAGKCMEKNMTTIGPYVLPLTEQIKVVMSLAGR 214
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BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Match: A0A6U6FBZ9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FBZ9_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.030e-35
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALR 291
            NTLFRVGGAAI+LSNKW D  R+ +KLL+TVR QG+   A  AVYE+ D  GN GVRLSK+IVKVAG+ MEKN T++GPYVLP++EQ KVV +LA R
Sbjct:   71 NTLFRVGGAAIVLSNKWTDGRRAWYKLLHTVRVQGSSDAALNAVYETADGSGNRGVRLSKDIVKVAGKCMEKNMTTIGPYVLPLTEQIKVVMSLAGR 167
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BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Match: A0A7S2XYV1_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYV1_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.990e-35
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVS 300
            NTLFR GGAAILL+NK     ++K+KLL TVRTQG G DA+EAVYE ED  G+HGV+LSK+IV VAGR MEKNFT+LGP VLP+SEQ KVV A+ LRK +
Sbjct:  309 NTLFRCGGAAILLTNKPSAGFKAKYKLLCTVRTQGIGEDAYEAVYECEDKDGHHGVKLSKDIVMVAGRTMEKNFTTLGPLVLPLSEQAKVVWAIVLRKAT 408
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BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Match: A0A7S2RV91_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RV91_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.990e-35
Identity = 64/97 (65.98%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALR 291
            NTLFR GGAA++LSN W D  R+ FKLL+ VRTQG+G DA++ VYE+ED  GN GVRLSKE+VKVAG+ MEKN T++GPYVLPISEQ+K++ +L  R
Sbjct:  329 NTLFRCGGAAMVLSNNWFDGHRALFKLLHLVRTQGSGDDAYQCVYEAEDEDGNRGVRLSKEVVKVAGKCMEKNMTTMGPYVLPISEQFKLLLSLIAR 425
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BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Match: A0A7S2I4J3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4J3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 4.460e-35
Identity = 66/97 (68.04%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALR 291
            NTLFR GGAAI+LSNKW D  R+ +KLL+TVR QG G DA++ VYE++D  G  GVRLSK+IVKVAG+ MEKN T+LGPYVLP+SEQ KVV +LA R
Sbjct:  334 NTLFRCGGAAIVLSNKWWDGRRAWYKLLHTVRVQGTGEDAYQCVYETQDEDGYRGVRLSKDIVKVAGKCMEKNMTTLGPYVLPLSEQIKVVFSLASR 430
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BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Match: A0A8J2S738_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S738_9STRA)

HSP 1 Score: 134 bits (338), Expect = 5.640e-35
Identity = 64/99 (64.65%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKV 297
            NTLFR GGAAI+LSNKW+D  R+KFKLL  VRTQG G +A+ AVYE +D  G HGVRL + IV +AG  MEKNFT LGPYVLP+SEQ +V  +LA +K+
Sbjct:  313 NTLFRCGGAAIMLSNKWRDGQRAKFKLLRVVRTQGTGDEAYAAVYECQDANGEHGVRLDRNIVNIAGHTMEKNFTVLGPYVLPLSEQIRVAYSLAKKKI 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18257.5659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTR7_ECTSI5.170e-5898.003-ketoacyl-CoA synthase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTW0_9STRA4.520e-3768.043-ketoacyl-CoA synthase n=1 Tax=Tribonema minus Ta... [more]
A0A7S2A0B6_TRICV4.530e-3764.65Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A482RY66_9ARCH2.390e-3666.00FAE domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A6U6FA53_9STRA7.250e-3667.01Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6U6FBZ9_9STRA1.030e-3567.01Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2XYV1_9STRA1.990e-3569.003-ketoacyl-CoA synthase n=1 Tax=Fibrocapsa japonic... [more]
A0A7S2RV91_9STRA2.990e-3565.983-ketoacyl-CoA synthase n=1 Tax=Eucampia antarctic... [more]
A0A7S2I4J3_9STRA4.460e-3568.04Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A8J2S738_9STRA5.640e-3564.653-ketoacyl-CoA synthase n=1 Tax=Pelagomonas calceo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18257contigEcto-sp13_S_contig18257:534..1320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score195.3
Seed ortholog evalue1.5e-47
Seed eggNOG ortholog2880.D8LTR7
Model size318
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K15397
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.synthase
EggNOG OGs2QPKZ@2759,COG3424@1
EC2.3.1.199
Cds size318
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462940.9610739-CDS-Ecto-sp13_S_contig18257:533..7491681462940.9610739-CDS-Ecto-sp13_S_contig18257:533..749Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18257 534..749 -
1681462940.9745886-CDS-Ecto-sp13_S_contig18257:1218..13201681462940.9745886-CDS-Ecto-sp13_S_contig18257:1218..1320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18257 1219..1320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18257.5659.1prot_Ecto-sp13_S_contig18257.5659.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18257 534..1320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18257.5659.1

>prot_Ecto-sp13_S_contig18257.5659.1 ID=prot_Ecto-sp13_S_contig18257.5659.1|Name=mRNA_Ecto-sp13_S_contig18257.5659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
NTLFRVGGAAILLSNKWQDASRSKFKLLYTVRTQGAGRDAFEAVYESEDN
LGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVS
VLCGT*
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mRNA from alignment at Ecto-sp13_S_contig18257:534..1320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18257.5659.1 ID=mRNA_Ecto-sp13_S_contig18257.5659.1|Name=mRNA_Ecto-sp13_S_contig18257.5659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=787bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18257:534..1320- (Ectocarpus species13 EcNAP12_S_4_19m)
AACACCCTGTTCCGCGTGGGCGGAGCCGCGATCCTTCTGTCCAACAAGTG
GCAAGACGCCAGCCGCTCCAAGTTCAAGCTGCTCTACACCGTGCGGACAC
AGGTGCGCCTTTCTCCATGTGGAGAGCTGTAATAGCCATGCATGGAACGC
TTGTGGCGGAGTTAGGTACTATTTGCGAGAGAGATACTCGACGCAGAGCC
ATGTGGCGTGTGAAAGCGTTACGATAGGTCCCCAAGCTTCAGTGCAGAGC
TAATACTCGAGACTAGAACATCAACATTTGCAAGGGTACACGGTCGGAAT
ACCAAGTGCGGACCCCCTCCCCCCCCCTCCCTACTCTTCGGCAAACAGAC
GTGCTCCTGGCTTAAGGTATAGCTGTCGCCCTACATGATCGAATTCCTTT
TGTGCGGCGCTTCCTGATCACGAGCTTGCAACCCCCCCCCCCGTCAGTCC
CAGCATTGTAGGGATTCGAGGTCAATTGTCTATTAACGACTACGGCACTC
GTCGAGTTACCCCCCCCTCCCAGACGTACAAAGCATGAGAGTAATCCCCC
CCCGCGCGCTCCCGCGTCCAGGGAGCGGGCAGAGACGCGTTCGAGGCGGT
GTACGAGTCTGAGGACAACCTGGGGAACCATGGCGTTCGTCTATCGAAGG
AGATCGTGAAGGTGGCCGGTCGTGCGATGGAGAAGAACTTCACCTCCCTG
GGGCCGTACGTGCTGCCCATCTCGGAGCAGTACAAGGTGGTGAAGGCTCT
CGCCCTCCGCAAGGTAAGTGTACTGTGCGGTACTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18257:534..1320-

>mRNA_Ecto-sp13_S_contig18257.5659.1 ID=mRNA_Ecto-sp13_S_contig18257.5659.1|Name=mRNA_Ecto-sp13_S_contig18257.5659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18257:534..1320- (Ectocarpus species13 EcNAP12_S_4_19m)
AACACCCTGTTCCGCGTGGGCGGAGCCGCGATCCTTCTGTCCAACAAGTG
GCAAGACGCCAGCCGCTCCAAGTTCAAGCTGCTCTACACCGTGCGGACAC
AGGGAGCGGGCAGAGACGCGTTCGAGGCGGTGTACGAGTCTGAGGACAAC
CTGGGGAACCATGGCGTTCGTCTATCGAAGGAGATCGTGAAGGTGGCCGG
TCGTGCGATGGAGAAGAACTTCACCTCCCTGGGGCCGTACGTGCTGCCCA
TCTCGGAGCAGTACAAGGTGGTGAAGGCTCTCGCCCTCCGCAAGGTAAGT
GTACTGTGCGGTACTTAG
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