mRNA_Ecto-sp13_S_contig1825.5656.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1825.5656.1
Unique NamemRNA_Ecto-sp13_S_contig1825.5656.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Match: A0A6H5KX03_9PHAE (Ribosomal RNA-processing protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX03_9PHAE)

HSP 1 Score: 556 bits (1433), Expect = 1.110e-189
Identity = 353/386 (91.45%), Postives = 359/386 (93.01%), Query Frame = 3 
Query:  492 APAPVQQSASLSATPPGDVEHVPPVERCSDHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDAEQVPPVESRNRNRTKRSKKAREAGHNSSTNSDKMPISPVQTKGSPPYGGGNAAGRAAXXXXXX--SGSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1643
            APAP QQ+A  S T PGDVEHVPPVERCSDHG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         R AEQVPPV+S NR+RTKR KKAREAGHNSSTN+DKMPISPVQTKGSPP GGGN AGRA XXXXXX  SGSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELF+VYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATV NKVHSFDLVSPNPLVTACDMANVPIKDASVHVA+FCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDT QMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR
Sbjct:  153 APAPAQQAACSSPTHPGDVEHVPPVERCSDHGGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------RHAEQVPPVDSSNRHRTKRPKKAREAGHNSSTNNDKMPISPVQTKGSPPSGGGNTAGRAXXXXXXXXGSGSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAIFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTMQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 529
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BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Match: D7FVW1_ECTSI (Ribosomal RNA-processing protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW1_ECTSI)

HSP 1 Score: 483 bits (1244), Expect = 2.950e-164
Identity = 253/263 (96.20%), Postives = 256/263 (97.34%), Query Frame = 3 
Query:  834 EAGHNSSTNSDKMPISPVQTKGSPPYGGGNAAGRAAXXXXXXSGSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAK 1622
            E GHNSSTN+DKMPISPVQTKGS P GGGN AGRAAXXXXXX GSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESG SLAKFKQEPELF+VYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATV NKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVT+RLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAK
Sbjct:    2 EVGHNSSTNNDKMPISPVQTKGSRPSGGGNTAGRAAXXXXXXXGSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESGVSLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTRRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAK 264
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BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Match: A0A836C7W6_9STRA (Ribosomal RNA-processing protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7W6_9STRA)

HSP 1 Score: 327 bits (838), Expect = 8.460e-105
Identity = 157/221 (71.04%), Postives = 186/221 (84.16%), Query Frame = 3 
Query:  981 LSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1643
            +S+LQ+ M++KLEGA+FRM+NE LYT  S  S ++F +EP+LF++YHRGFREQVEKWPVHPLD+II WLKKYPKA +ADFGCGEARLA TV N+ HSFDL +PN  VTACDMA+VP+ DASVH+AVFCLSLMGTNLADF+REA RVL PGGLVKVAEVRSRFEG  GG+  FL V +RLGFD RQ D ++ MF++ EFKK+ R PE  VEF AKAC+YKRR
Sbjct:    1 MSKLQEAMKRKLEGARFRMLNEDLYTKHSTLSFSQFSEEPDLFDIYHRGFREQVEKWPVHPLDVIIRWLKKYPKAVIADFGCGEARLAQTVPNRCHSFDLCAPNAHVTACDMAHVPLPDASVHIAVFCLSLMGTNLADFVREARRVLKPGGLVKVAEVRSRFEGAPGGLNAFLGVMRRLGFDQRQCDNTSTMFVMMEFKKASRAPEADVEFTAKACVYKRR 221
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BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Match: A0A8K1C374_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C374_PYTOL)

HSP 1 Score: 270 bits (690), Expect = 6.970e-82
Identity = 131/222 (59.01%), Postives = 173/222 (77.93%), Query Frame = 3 
Query:  981 LSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1643
            LS++Q+ MR++L+G +FRM+NE LYTS    +   F+ +PELF+VYH+GFREQ EKWPV+PLD  ID++KK+PKA VADFGCG+ARLA +V+NKVHSFDLVS  P VTAC++ANVP+ D S+ +AV+CL+LMGT++ +++ E +RVL P G++KVAEV+SRFE E  GG+  F+   KR+GFD +  D +NKMF L EF K+ RKPE GV  E K C YKRR
Sbjct:   63 LSKMQEEMRRRLDGGKFRMLNEQLYTSTGKEAFKTFQSDPELFDVYHQGFREQAEKWPVNPLDTFIDYVKKHPKAIVADFGCGDARLAESVKNKVHSFDLVSRKPQVTACNIANVPLPDKSIDIAVYCLALMGTSIREYVLEVYRVLKPKGILKVAEVKSRFETEGLGGIAGFVAAMKRMGFDLQHKDEANKMFALFEFVKTPRKPEDGVLIEFKPCEYKRR 284
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BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Match: A0A024G7I7_9STRA (Ribosomal RNA-processing protein 8 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G7I7_9STRA)

HSP 1 Score: 268 bits (686), Expect = 2.160e-81
Identity = 124/222 (55.86%), Postives = 175/222 (78.83%), Query Frame = 3 
Query:  981 LSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1643
            LS+LQ+ MR++L+G++FRM+NE LYT     +   F+ +PELF++YH+GFREQV KWP++PLDI ID++KK+P A VADFGCGEARLA +V N+VHSFDLV+PN  V AC++A+VP+   S+ +A++CL+LMGT + ++LREAHRV+  GG++K+AEV+SRFE ++ GG++ F+   ++LGFD ++ D  NKMF+L EF+KS RK +  V  E KAC YKRR
Sbjct:   56 LSKLQQAMRKRLDGSRFRMLNEELYTKTGDDAFQTFQDDPELFDIYHQGFREQVTKWPINPLDIFIDYIKKHPNAVVADFGCGEARLAQSVPNRVHSFDLVAPNDHVVACNIAHVPLNSKSIDIAIYCLALMGTTIPEYLREAHRVMKAGGILKIAEVKSRFETKQLGGIQGFISQLRKLGFDYQEKDERNKMFVLLEFQKSNRKKDTNVRIELKACEYKRR 277
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BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Match: A0A6A3U140_9STRA (Ribosomal RNA-processing protein 8 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U140_9STRA)

HSP 1 Score: 268 bits (684), Expect = 5.520e-81
Identity = 128/225 (56.89%), Postives = 177/225 (78.67%), Query Frame = 3 
Query:  972 APRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1643
            A RL+E    MR+K++G +FRM+NE LYT+  GA+ + F+ +PELF+VYH+GFRE  +KWP +PLD  ID++K++PKA VADFGCG+ARLA +V NKVHSFDLVS  P VTAC++A+VP+KD++V + V+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG+E F++  +++GFD +  D  NKMF+L EF KS RKP++    E KAC YKRR
Sbjct:   65 AERLAE----MRRKIDGGKFRMLNEQLYTTTGGAAFSTFQSDPELFDVYHQGFREMADKWPTNPLDTFIDYVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPHVTACNIADVPLKDSTVDIGVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIEGFVQTLRKMGFDCKHKDERNKMFVLFEFVKSSRKPQKVDPIEFKACEYKRR 285
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BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Match: A0A3R7KAK8_9STRA (Ribosomal RNA-processing protein 8 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KAK8_9STRA)

HSP 1 Score: 263 bits (673), Expect = 2.030e-79
Identity = 126/215 (58.60%), Postives = 169/215 (78.60%), Query Frame = 3 
Query: 1002 MRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1643
            MR++L+G +FRM+NE LYTS    S + F+++PELF+VYH+GFREQ +KWPV+PLD  ID++K++PKA VADFGCG+ARLA +V NKVHSFDLVS  P VTAC++A+VP+KD+S  + V+CL+LMG N+ +++RE +RVL PGG++KVAEV+SRFE E  GG++ F+EV  ++GFD +  D  NKMF+L EF KS RK +     E KAC YKRR
Sbjct:   67 MRRRLDGGKFRMLNEQLYTSTGEDSFSTFQEDPELFDVYHQGFREQADKWPVNPLDTFIDYVKRHPKAVVADFGCGDARLAESVSNKVHSFDLVSRKPHVTACNIADVPLKDSSTDIGVYCLALMGKNVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIDGFVEVLHKMGFDCKNKDERNKMFVLFEFIKSTRKAQDAGPLELKACEYKRR 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Match: D0N5P9_PHYIT (Ribosomal RNA-processing protein 8 n=4 Tax=Phytophthora TaxID=4783 RepID=D0N5P9_PHYIT)

HSP 1 Score: 263 bits (672), Expect = 2.850e-79
Identity = 126/225 (56.00%), Postives = 175/225 (77.78%), Query Frame = 3 
Query:  972 APRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1643
            A RL+E    MR+K++G +FRM+NE LYT+    + + F+ +PELF+VYH+GFRE  +KWP +PLD  ID++K++PKA VADFGCG+ARLA +V NKVHSFDLVS  P+VTAC++A+VP+KD+SV +AV+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG++ F++  +++GFD +  D  NKMF+L E  KS RKP+     E KAC YKRR
Sbjct:   61 AERLAE----MRRKIDGGKFRMLNEQLYTTTGDDAYSTFQDDPELFDVYHQGFREMADKWPTNPLDTFIDYVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPIVTACNIADVPLKDSSVDIAVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIDGFVQTLRKMGFDCKHKDERNKMFVLFELVKSTRKPQNVAPIEFKACEYKRR 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Match: A0A0W8D147_PHYNI (Ribosomal RNA-processing protein 8 n=10 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D147_PHYNI)

HSP 1 Score: 263 bits (671), Expect = 3.620e-79
Identity = 126/225 (56.00%), Postives = 175/225 (77.78%), Query Frame = 3 
Query:  972 APRLSELQKRMRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1643
            A RL+E    MR+K++G +FRM+NE LYT+    + + F+ +PELF+VYH+GFRE  +KWP +PLD  ID++K++PKA VADFGCG+ARLA +V NKVHSFDLVS  P+VTAC++A+VP+KD+SV + V+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG+E F++  +++GFD +  D  NKMF+L EF KS R+P+     E KAC YKRR
Sbjct:   58 AERLAE----MRRKIDGGKFRMLNEQLYTTTGDDAFSTFQDDPELFDVYHQGFREMADKWPTNPLDTFIDFVKRHPKAVVADFGCGDARLAESVPNKVHSFDLVSRKPIVTACNIADVPLKDSSVDIGVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIEGFVQTLRKMGFDCKHKDERNKMFVLFEFVKSTRRPQNVGPIEFKACEYKRR 278
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Match: H3G5K6_PHYRM (Ribosomal RNA-processing protein 8 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5K6_PHYRM)

HSP 1 Score: 259 bits (663), Expect = 8.920e-79
Identity = 126/222 (56.76%), Postives = 170/222 (76.58%), Query Frame = 3 
Query: 1002 MRQKLEGAQFRMINETLYTSESGASLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLK-------KYPKARVADFGCGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEE-GGVERFLEVTKRLGFDTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR 1643
            MR+KL+G +FRM+NE LYTS  G + + F+++PELF+VYH+GFREQ +KWP +PLD  ID++K       ++PKA VADFGCG+ARLA +V N VHSFDLVS  P VTAC++A+VP+KDASV + V+CL+LMGT++ +++RE +RVL PGG++KVAEV+SRFE E  GG+  F+++  ++GFD +  D  NKMF+L EF KS RKP+     E KAC YKRR
Sbjct:    2 MRRKLDGGKFRMLNEQLYTSTGGDAFSTFQEDPELFDVYHQGFREQADKWPTNPLDTFIDYVKCVADALRRHPKAVVADFGCGDARLAESVPNTVHSFDLVSRKPHVTACNIADVPLKDASVDIGVYCLALMGTSIREYVREVYRVLKPGGVLKVAEVKSRFESESLGGIVGFVQILSKMGFDCKSKDERNKMFVLFEFVKSSRKPQNVRPVELKACEYKRR 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1825.5656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX03_9PHAE1.110e-18991.45Ribosomal RNA-processing protein 8 n=1 Tax=Ectocar... [more]
D7FVW1_ECTSI2.950e-16496.20Ribosomal RNA-processing protein 8 n=1 Tax=Ectocar... [more]
A0A836C7W6_9STRA8.460e-10571.04Ribosomal RNA-processing protein 8 n=1 Tax=Tribone... [more]
A0A8K1C374_PYTOL6.970e-8259.01Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024G7I7_9STRA2.160e-8155.86Ribosomal RNA-processing protein 8 n=2 Tax=Albugo ... [more]
A0A6A3U140_9STRA5.520e-8156.89Ribosomal RNA-processing protein 8 n=4 Tax=Phytoph... [more]
A0A3R7KAK8_9STRA2.030e-7958.60Ribosomal RNA-processing protein 8 n=3 Tax=Phytoph... [more]
D0N5P9_PHYIT2.850e-7956.00Ribosomal RNA-processing protein 8 n=4 Tax=Phytoph... [more]
A0A0W8D147_PHYNI3.620e-7956.00Ribosomal RNA-processing protein 8 n=10 Tax=Phytop... [more]
H3G5K6_PHYRM8.920e-7956.76Ribosomal RNA-processing protein 8 n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1825contigEcto-sp13_S_contig1825:10681..15204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score485.3
Seed ortholog evalue3.6e-134
Seed eggNOG ortholog2880.D7FVW1
Preferred nameRRP8
Model size2068
KEGG koko:K10260,ko:K14850,ko:K17478
KEGG Pathwayko04120,map04120
KEGG ModuleM00387
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000183,GO:0000785,GO:0000792,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005677,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008219,GO:0008649,GO:0008757,GO:0009267,GO:0009451,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0012501,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016458,GO:0016740,GO:0016741,GO:0017053,GO:0019219,GO:0019222,GO:0022613,GO:0023052,GO:0030684,GO:0030686,GO:0030687,GO:0030688,GO:0031167,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0033553,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0035064,GO:0035556,GO:0040029,GO:0042149,GO:0042254,GO:0042273,GO:0042393,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045934,GO:0046015,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071156,GO:0071158,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072331,GO:0072332,GO:0080090,GO:0090068,GO:0090304,GO:0090568,GO:0097190,GO:0097193,GO:0140030,GO:0140034,GO:0140098,GO:0140102,GO:1901360,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons5
EggNOG free text desc.chromatin silencing at rDNA
EggNOG OGsKOG3045@1,KOG3045@2759
EC2.1.1.287
Cds size1623
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03110,ko04121,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1825.5656.1prot_Ecto-sp13_S_contig1825.5656.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1825 11103..15181 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462940.7228005-UTR-Ecto-sp13_S_contig1825:10680..111021681462940.7228005-UTR-Ecto-sp13_S_contig1825:10680..11102Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1825 10681..11102 -
1681462940.7817392-UTR-Ecto-sp13_S_contig1825:15181..152041681462940.7817392-UTR-Ecto-sp13_S_contig1825:15181..15204Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1825 15182..15204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462940.7336135-CDS-Ecto-sp13_S_contig1825:11102..111261681462940.7336135-CDS-Ecto-sp13_S_contig1825:11102..11126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 11103..11126 -
1681462940.7430692-CDS-Ecto-sp13_S_contig1825:12076..122561681462940.7430692-CDS-Ecto-sp13_S_contig1825:12076..12256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 12077..12256 -
1681462940.7528603-CDS-Ecto-sp13_S_contig1825:12626..128061681462940.7528603-CDS-Ecto-sp13_S_contig1825:12626..12806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 12627..12806 -
1681462940.7630842-CDS-Ecto-sp13_S_contig1825:13203..133501681462940.7630842-CDS-Ecto-sp13_S_contig1825:13203..13350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 13204..13350 -
1681462940.772543-CDS-Ecto-sp13_S_contig1825:14089..151811681462940.772543-CDS-Ecto-sp13_S_contig1825:14089..15181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 14090..15181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1825.5656.1

>prot_Ecto-sp13_S_contig1825.5656.1 ID=prot_Ecto-sp13_S_contig1825.5656.1|Name=mRNA_Ecto-sp13_S_contig1825.5656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=541bp
MGGEEQHQHREHAAGSSSAKKNKRKRKKGKGGNNPKVGEPGGDRARRETE
GERDRVAETAGGGAEQQQGGGSNNSNSSHSINHRDGAARRPPHQRRQEQQ
QQQAASSARAVSNSNSEASSDRCVDDGGKKKRSKKHCRKEVDDAAAAAAA
AAAAAPAPAPVQQSASLSATPPGDVEHVPPVERCSDHGGNKKKKSKRRRR
KEAAEAEAAAAPAAEAAAAPATAASSASASATPPTSKSSSSAAPPPRDAE
QVPPVESRNRNRTKRSKKAREAGHNSSTNSDKMPISPVQTKGSPPYGGGN
AAGRAAAAAAAGSGSGAPRLSELQKRMRQKLEGAQFRMINETLYTSESGA
SLAKFKQEPELFNVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFG
CGEARLAATVRNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSL
MGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGEEGGVERFLEVTKRLGF
DTRQMDRSNKMFLLAEFKKSGRKPERGVEFEAKACIYKRR*
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mRNA from alignment at Ecto-sp13_S_contig1825:10681..15204-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1825.5656.1 ID=mRNA_Ecto-sp13_S_contig1825.5656.1|Name=mRNA_Ecto-sp13_S_contig1825.5656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4524bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1825:10681..15204- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCTTGGGACATCACAATAATATGGGTGGCGAGGAGCAGCACCAGCAC
CGGGAGCACGCGGCGGGATCGTCGTCAGCCAAGAAGAACAAGCGGAAGCG
AAAGAAGGGGAAGGGCGGCAACAACCCAAAGGTCGGGGAGCCTGGCGGTG
ACCGCGCAAGAAGAGAAACGGAAGGGGAGAGGGATAGGGTGGCTGAGACT
GCAGGTGGTGGCGCAGAACAGCAGCAGGGTGGCGGCAGCAACAATAGCAA
CAGCAGCCACAGCATCAACCACAGAGATGGTGCAGCCAGGAGACCACCAC
ACCAGCGGCGGCAGGAGCAGCAGCAGCAGCAGGCCGCAAGTTCGGCCAGG
GCAGTGTCCAACTCTAACTCGGAAGCCAGCAGCGATAGATGCGTAGATGA
CGGTGGGAAGAAGAAGAGGAGCAAGAAGCATTGTCGAAAGGAAGTAGACG
ACGCAGCCGCGGCAGCAGCAGCAGCAGCAGCCGCTGCACCAGCACCAGCA
CCCGTACAACAATCAGCGTCCTTGTCGGCAACGCCTCCCGGCGATGTTGA
ACATGTGCCACCGGTCGAGAGATGCAGCGATCACGGTGGGAACAAGAAGA
AGAAGAGCAAGAGACGACGTCGAAAGGAAGCAGCAGAAGCCGAAGCAGCA
GCCGCACCAGCAGCCGAAGCAGCAGCAGCACCAGCTACAGCAGCATCATC
AGCATCAGCATCAGCGACTCCACCAACATCAAAGTCTTCATCGTCAGCAG
CGCCTCCGCCGCGCGATGCTGAACAGGTGCCACCCGTCGAGAGCAGGAAC
CGAAACCGCACCAAGAGATCCAAGAAGGCAAGGGAGGCGGGCCACAATAG
CAGCACCAACAGCGACAAGATGCCGATAAGTCCCGTGCAAACGAAAGGGT
CGCCACCTTATGGGGGAGGCAACGCGGCCGGACGGGCGGCGGCGGCGGCG
GCGGCAGGGTCTGGGTCGGGCGCTCCCAGGCTGTCGGAGCTGCAGAAGCG
CATGCGGCAGAAACTGGAGGGCGCCCAGTTCCGCATGATCAACGAGACGC
TGTATACCTCGGAGAGTGGGGCCTCCCTCGCTAAGTTCAAGCAAGAGCCG
GAGCTTTTTAATGTGGTGAGAAAGAGAGAGGAGGCTTTGTGCCCTGCCTC
ACTGTAACATCAAAAACCTTTGGACGCCCTACTGGTCAACGCCAACTCTG
TGGGTTTTTCCGTAGTCTCTTGGTCGTCAGCACTACTTCGCGGAAACATG
TGTTAGTTCCAAGCTGTCGGATAGATGAAACGTTTGTCGGGGACCCCTGT
AGACGAAAATCATGAAACTTATTGGTTGGACACACGCAGCATGTCGCGGA
ACGTTGCATGGGGCCGATCACCAGCAGGGGAACGCTCCAAACGCATGAAA
GGTAGCGACTACGAAGCGACTAAACGATATGTCGTTGGACCCCCACTTTG
TCGCATGATTTTGGCATGCGCTAGGCGATAGGGTTCAAGCTTGTTGCGTG
TTTTTGTTGTTTCTCAGGCGATAACCTGTCCCCACGCCTGGCGCCGAAGT
AGAGTACGAGGGACAAGTTTGGGAAGGTCCGCCCGCCCGCCGGGGGGGGG
GAAGCAGGCCTCATCCAACCAACGCTTACGTTATGTGATCAACAATTGCC
AAGAATACAGCAATTACACCAGAGTGCATGCACCAGCAGGAAGCCACTAG
CAGCCGCTGCACCATGTCCGTTTGCTGCACCAATCAACCCTCCTTCGGCT
CCCACGATCGCATCTGATGTTTCCTCCGCCCACGTCACCTGACTCCCCCC
CCTCGCCGTACTCCCCGCCACCGAAATACTCCCGACCGAACCTCTCTGCA
AAAGTACCACAGAGGGTTCCGAGAACAGGTGGAGAAGTGGCCGGTGCATC
CGCTGGACATCATCATCGACTGGCTGAAGAAGTACCCGAAGGCGCGAGTG
GCCGACTTTGGCTGCGGGGAGGCGCGCCTTGCGGCGACGGTGCGCAACAA
GGTGTGGTACTGCCGCAGGGGCCCAAAGGCATTTGCAATGTGCTATCCGT
CATCGTTAGGTCTCCATCGGCGTCTTTTTCGCCCGTGTGTTTCTAGGGGA
GCCAAAGTCTTTTTACGTTATTTGTTGTATTCTCCTGTAAAGTCGCACTT
TTTGGTCACTGGCGTCGTACAGGATGATTCGGCTTTGTCGACTCCTCTCC
TTGTTCCCCAACTTCGCGGTTCCTTTCTCGCAGCAAACACTGCAAAGGAA
AATTGTTGGCGTCGCCCTGCACAGAAGCTCGCACAAAGAATCGTGTGCTG
TGCTGAACATTGTTGTCTCTCTGCTGCTTTCATTCGGGTTTTTATGCGCC
CCTCCCCTCCCCCTCGACTTCGGTGGTTTGTCCTCGACAACACGGCAGGT
TCACTCGTTCGACTTGGTGTCTCCCAACCCGCTGGTGACCGCGTGCGACA
TGGCCAACGTGCCGATCAAGGACGCCTCGGTTCACGTGGCCGTCTTCTGC
CTCTCGCTCATGGGGACTAACCTCGCGGACTTTTTGCGCGAGGCTCATCG
GGTGCTCGTCCCGGGGGGGCTCGTGAAGGTGCGCAGGGTCGCGCTGGAGG
GGGTGGGGTGTAGACTACGTGTTGGGGCTCCTCGGTGTTGTCGTTGTTGC
CTTCCTTGTCATCGCTGCTGATGACGATGTTGTTGTGGTGTTCCTTGATT
GTTTTCTATCCCTTATGCGGATTTTGTTTTTTTGCACGTGCATGGTTTCT
CGGGGACAAGCCGTACCCTATGCGGGCCAATGCCCGATGCGACAAGCCAT
GCCCTGTGCGGGCCAATGCCCTATGCGAGCCTATGCCCTGTGCGGGCCAA
TGCCCTGTGCGGGCCAATGCCAGATGCGGGCCAATGCCAGATGCGGGCCA
ACCAAAACGCTCCACCCAACCATTCCTCCGTATGGCTTGCAAACCAAGGT
AGCCGAGGTGAGGAGCAGGTTCGAGGGAGAGGAAGGCGGGGTGGAGCGTT
TCTTGGAGGTGACGAAGCGGCTTGGCTTCGACACGAGGCAGATGGACCGA
TCCAACAAGATGTTCCTCCTCGCGGAATTCAAGAAGTCCGGCCGGAAGCC
GGAGAGGGGCGTCGAGTTCGAGGCTAAGGTGAAACCGTCGCCGTCGCTGA
CTTGTCGCTTCAAAGGAATGCGAGTGTGTGTCGCCTCCATGGAGTGCGTG
TGCGTGTCTGTTGTTGTGTTACTGTCTCATCATGTATCTGTGTGTCTGTA
GTGTTTGGATTGACCGCGCAAACCGGCTGACGAATGAGCACAAGTCAGTC
TCAGTGCGACTGAAAACAGAAAGCCCTTAGATACGAAGGCCATGATCTGG
GAGCCCCGAGGGGGAGGCTAGGCTGGTCTCGGATTGAAGGTAGACACATG
TGCGTGCGTGTGTTCGTTTCTTTCGTTAGCATGGACCGTGCTATCCGGAT
GAGATACAAAGAGGCACCAGCTTTCAAGCTGACAAATTTGCGCAAACAAG
ATTCCTAGCCATGGCGCGCTCGCGTGTGTGTGAGCCTTGTTGGTTTGCAT
CGGCCGTGCGAACGGACTAACCCATGAAGCGTTGTCAGTCTTTTGCAGCA
GGCAACAGCGCCCACACGCTTTTCAAGCGTGCAGCGTCTATGGTGTTTGT
CTGCATCCCAAGGTAGCGAATCACAAAACATTCTGCAGCATCCGTGGCAG
GCCACGATTAGTGCGATCCCCCAAGCCCTGTTTTGTTCCTAGTCTGCTTT
GAAGTCGCAGTCGTGGTATTACTTTTCAGAATGTTCGACAAAGCTTCCGA
ATTGCAAGTTACATTCGGAGGTATTCTCGAGCCTTGATAGTGGCGTGGCC
GAAAGAGGGGTGCAGATGCCCGGGGGCACGGGTACTGGGTATTCAGCCGA
TGGAGTTCGGGTGCATTGGGAGCTACGGTAGACGCTCTCCGGATTCATGC
ATACATCGAAATACTTTCTTGGCAGAGGCGGTACACCTTGTGCGTTATCC
CCAATTACCATAACGCTTGTCACATCCCTGCCTCCCGATATATCCCGACG
CATGGTTGCTTTGAACTTCGCAACACAGGCTTGCATATACAAGCGGCGAT
AGGGACGGGCTTTCGGAGCGCGTAGCAGCTCCGTCTGGGGTGTGTCAAGC
GTTTTCTGTTGGGAAGTGCTGATATGTTGACGACGTAGAAGGAGCTGGAA
ATTGGGGGTACTGCTTTTCAAGAGTCCATTGTTCCGATCAAGGATATTGG
AATTCTTGTTCAGCCTGGCCATATTTGCCGCCGTCTAGAAGTGAGGAGGT
TTTCACGAATATGTATCGATTTGATCGTTGGAGTAGATTAGTTCTTGAAT
CGGTGCCGCCGCCGGGGAGGTTGTTTCAGCGGCGAAGGGCCCGCGTGAGT
GCGTGGAGGCCAACCAGTACATGGCAGATTTTTTAGCAAGGGTTTCCCGG
TGCATTCCAAGGGTCGTTGTCATTGAGGGGGTGATTATGTCATCGATATT
CGCTTAGAAACATACGAACCAGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1825:10681..15204-

>mRNA_Ecto-sp13_S_contig1825.5656.1 ID=mRNA_Ecto-sp13_S_contig1825.5656.1|Name=mRNA_Ecto-sp13_S_contig1825.5656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1825:10681..15204- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGGCGAGGAGCAGCACCAGCACCGGGAGCACGCGGCGGGATCGTC
GTCAGCCAAGAAGAACAAGCGGAAGCGAAAGAAGGGGAAGGGCGGCAACA
ACCCAAAGGTCGGGGAGCCTGGCGGTGACCGCGCAAGAAGAGAAACGGAA
GGGGAGAGGGATAGGGTGGCTGAGACTGCAGGTGGTGGCGCAGAACAGCA
GCAGGGTGGCGGCAGCAACAATAGCAACAGCAGCCACAGCATCAACCACA
GAGATGGTGCAGCCAGGAGACCACCACACCAGCGGCGGCAGGAGCAGCAG
CAGCAGCAGGCCGCAAGTTCGGCCAGGGCAGTGTCCAACTCTAACTCGGA
AGCCAGCAGCGATAGATGCGTAGATGACGGTGGGAAGAAGAAGAGGAGCA
AGAAGCATTGTCGAAAGGAAGTAGACGACGCAGCCGCGGCAGCAGCAGCA
GCAGCAGCCGCTGCACCAGCACCAGCACCCGTACAACAATCAGCGTCCTT
GTCGGCAACGCCTCCCGGCGATGTTGAACATGTGCCACCGGTCGAGAGAT
GCAGCGATCACGGTGGGAACAAGAAGAAGAAGAGCAAGAGACGACGTCGA
AAGGAAGCAGCAGAAGCCGAAGCAGCAGCCGCACCAGCAGCCGAAGCAGC
AGCAGCACCAGCTACAGCAGCATCATCAGCATCAGCATCAGCGACTCCAC
CAACATCAAAGTCTTCATCGTCAGCAGCGCCTCCGCCGCGCGATGCTGAA
CAGGTGCCACCCGTCGAGAGCAGGAACCGAAACCGCACCAAGAGATCCAA
GAAGGCAAGGGAGGCGGGCCACAATAGCAGCACCAACAGCGACAAGATGC
CGATAAGTCCCGTGCAAACGAAAGGGTCGCCACCTTATGGGGGAGGCAAC
GCGGCCGGACGGGCGGCGGCGGCGGCGGCGGCAGGGTCTGGGTCGGGCGC
TCCCAGGCTGTCGGAGCTGCAGAAGCGCATGCGGCAGAAACTGGAGGGCG
CCCAGTTCCGCATGATCAACGAGACGCTGTATACCTCGGAGAGTGGGGCC
TCCCTCGCTAAGTTCAAGCAAGAGCCGGAGCTTTTTAATGTGTACCACAG
AGGGTTCCGAGAACAGGTGGAGAAGTGGCCGGTGCATCCGCTGGACATCA
TCATCGACTGGCTGAAGAAGTACCCGAAGGCGCGAGTGGCCGACTTTGGC
TGCGGGGAGGCGCGCCTTGCGGCGACGGTGCGCAACAAGGTTCACTCGTT
CGACTTGGTGTCTCCCAACCCGCTGGTGACCGCGTGCGACATGGCCAACG
TGCCGATCAAGGACGCCTCGGTTCACGTGGCCGTCTTCTGCCTCTCGCTC
ATGGGGACTAACCTCGCGGACTTTTTGCGCGAGGCTCATCGGGTGCTCGT
CCCGGGGGGGCTCGTGAAGGTAGCCGAGGTGAGGAGCAGGTTCGAGGGAG
AGGAAGGCGGGGTGGAGCGTTTCTTGGAGGTGACGAAGCGGCTTGGCTTC
GACACGAGGCAGATGGACCGATCCAACAAGATGTTCCTCCTCGCGGAATT
CAAGAAGTCCGGCCGGAAGCCGGAGAGGGGCGTCGAGTTCGAGGCTAAGG
CTTGCATATACAAGCGGCGATAG
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