mRNA_Ecto-sp13_S_contig10606.566.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10606.566.1
Unique NamemRNA_Ecto-sp13_S_contig10606.566.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10606.566.1 vs. uniprot
Match: A0A6H5K9F0_9PHAE (Cyclin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9F0_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 9.200e-51
Identity = 90/97 (92.78%), Postives = 91/97 (93.81%), Query Frame = 2 
Query:    5 MSELRCLLPRGGEDTDLLCVEVSALGQAPVPATMLPRVSCDGWQQQEKQEVFRDSSADQAHEEFLTSLLAKTNAYRPLETSWQVMENAEFLDMRGAV 295
            MSEL  LLPRG EDTDLLCVEVSALGQAPVPAT LPRVSCDGWQ QEKQEVFRD SADQAHEEFLTSLLAKTNAYRPLETSWQVME+AEFLDMRGAV
Sbjct:    1 MSELSRLLPRGEEDTDLLCVEVSALGQAPVPATRLPRVSCDGWQLQEKQEVFRDGSADQAHEEFLTSLLAKTNAYRPLETSWQVMEDAEFLDMRGAV 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10606.566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9F0_9PHAE9.200e-5192.78Cyclin N-terminal domain-containing protein n=2 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10606contigEcto-sp13_S_contig10606:4866..5719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score183.7
Seed ortholog evalue4e-44
Seed eggNOG ortholog2880.D8LFC1
Model size295
KEGG koko:K06627
KEGG Pathwayko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.cell division
EggNOG OGsCOG5024@1,KOG0654@2759
Cds size291
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462541.882591-UTR-Ecto-sp13_S_contig10606:4865..48691681462541.882591-UTR-Ecto-sp13_S_contig10606:4865..4869Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10606 4866..4869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462541.8930078-CDS-Ecto-sp13_S_contig10606:4869..51341681462541.8930078-CDS-Ecto-sp13_S_contig10606:4869..5134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10606 4870..5134 +
1681462541.9010634-CDS-Ecto-sp13_S_contig10606:5693..57191681462541.9010634-CDS-Ecto-sp13_S_contig10606:5693..5719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10606 5694..5719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10606.566.1prot_Ecto-sp13_S_contig10606.566.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10606 4870..5719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10606.566.1

>prot_Ecto-sp13_S_contig10606.566.1 ID=prot_Ecto-sp13_S_contig10606.566.1|Name=mRNA_Ecto-sp13_S_contig10606.566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MSELRCLLPRGGEDTDLLCVEVSALGQAPVPATMLPRVSCDGWQQQEKQE
VFRDSSADQAHEEFLTSLLAKTNAYRPLETSWQVMENAEFLDMRGAV
back to top

mRNA from alignment at Ecto-sp13_S_contig10606:4866..5719+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10606.566.1 ID=mRNA_Ecto-sp13_S_contig10606.566.1|Name=mRNA_Ecto-sp13_S_contig10606.566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=854bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10606:4866..5719+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTATGAGCGAGCTGAGATGTCTGCTGCCTCGCGGCGGGGAGGATACGG
ACTTGCTGTGCGTCGAGGTCTCCGCCTTGGGCCAGGCTCCGGTGCCTGCA
ACAATGCTGCCGCGCGTCTCGTGCGACGGCTGGCAGCAGCAGGAGAAGCA
GGAAGTTTTCCGTGATAGCAGCGCGGATCAAGCTCACGAGGAGTTCTTGA
CGTCCCTTCTCGCCAAGACCAACGCGTACCGTCCCTTGGAGACTAGCTGG
CAGGTCATGGAGAACGCGGGTGAGAAAGAAAACAGTCGTGGTGCACAGCA
GTCAGTGTACAGTGTAGTCTACGCTTGGATTCTTCTGCTGCTGTATGGTA
CCGCTTCCGCTCAGCCGCATACTTTCACTTTCTTTGCACATAGTGTTCAA
TGTGCAGCAGGATAAGGTTTCGTTCGGCCTCTGAGGAAAAAAGACCCACC
GATAGAAGCAGTTCACGGACGACCGCGGTGGTCCCGTTGGGTCGCAAACA
GAAATGGCCACCTGTCGTGCTTGGTTCTTTGAATAGAGTCGAGGAACACG
TGGCGGGGAAAGGAGAGTACGGAGTGTGGCACGCCCGGGTTCGGGGAGGG
ATGAGGGAGGAACATGATGCATGAGGTCAGAGCAATTCTACAGCAGCAGA
GGCTCGATGTCGCGCATGCACCTCAACACTTCATCTTACCATGTGATAAA
TGTAGATCACTGCTGCTGGCCGATTGCTTATTTCATCGTATGCATTCTCA
TTTTTCTGCACAACTTTAACCATGATCCCCGTTACTACACTTTCCTTGTA
TGCTTGACCGTTTTTTCTCGACACGCAGAATTCCTCGACATGCGAGGCGC
CGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10606:4866..5719+

>mRNA_Ecto-sp13_S_contig10606.566.1 ID=mRNA_Ecto-sp13_S_contig10606.566.1|Name=mRNA_Ecto-sp13_S_contig10606.566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10606:4866..5719+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGAGCTGAGATGTCTGCTGCCTCGCGGCGGGGAGGATACGGACTT
GCTGTGCGTCGAGGTCTCCGCCTTGGGCCAGGCTCCGGTGCCTGCAACAA
TGCTGCCGCGCGTCTCGTGCGACGGCTGGCAGCAGCAGGAGAAGCAGGAA
GTTTTCCGTGATAGCAGCGCGGATCAAGCTCACGAGGAGTTCTTGACGTC
CCTTCTCGCCAAGACCAACGCGTACCGTCCCTTGGAGACTAGCTGGCAGG
TCATGGAGAACGCGGAATTCCTCGACATGCGAGGCGCCGTG
back to top