mRNA_Ecto-sp13_S_contig1825.5655.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1825.5655.1
Unique NamemRNA_Ecto-sp13_S_contig1825.5655.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Match: D7FVW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW2_ECTSI)

HSP 1 Score: 393 bits (1009), Expect = 1.600e-136
Identity = 199/206 (96.60%), Postives = 202/206 (98.06%), Query Frame = 3
Query:  126 MTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENRRQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNITKHRAQVRSNNLTRLGDSRCGYNILTGQPREEILDPPVPKPSDAVAHWSHHQGG 743
            MTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHER VQIN+NRRQLRVERE KRWEDMEKKEGDDEQRWN LRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADN+TKHRAQVRSNNLTRLGDSRCGYNILTGQPREEI+DPPVPKPSDAVA WSHHQGG
Sbjct:    1 MTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERKVQINDNRRQLRVEREGKRWEDMEKKEGDDEQRWNRLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNVTKHRAQVRSNNLTRLGDSRCGYNILTGQPREEIVDPPVPKPSDAVALWSHHQGG 206          
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Match: A0A7S2XXX1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXX1_9STRA)

HSP 1 Score: 213 bits (541), Expect = 5.930e-65
Identity = 114/191 (59.69%), Postives = 140/191 (73.30%), Query Frame = 3
Query:  105 GFRNIKPMTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENRRQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNITKHRAQVRSNNLTRLGDSRCGYNILTGQPREE 677
            GFRNIKP+TR ER A KDKVALEK RLM RAG  AK+ R+N P EGV L    PDAAGFI+DADRFHSDT GEE LRR+A+  R V+  E RR   ++REE+RW+ ++  +  DE++WN +R+   KSKKNKS VPYN I+L+YNDG DG+RL   D  T+ RA +R  N+ R GD+RCGYNILTG+ R E
Sbjct:   24 GFRNIKPLTRAERGAQKDKVALEKARLMNRAGHQAKIYRENAPVEGVGLLGLPPDAAGFISDADRFHSDTSGEELLRRQAEQARKVEFYEKRRAKNIDREEERWQKIKDDKIADEEKWNRMREMEVKSKKNKSAVPYNAITLQYNDGHDGERLRQEDQRTRDRAHMRQQNMARHGDTRCGYNILTGEARSE 214          
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Match: A0A835Z1N9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.180e-60
Identity = 116/212 (54.72%), Postives = 138/212 (65.09%), Query Frame = 3
Query:  126 MTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENRRQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNITKHRAQVRSNNLTRLGDSRCGYNILTGQPREEILDPPVPKPSDAVA---------HWSHH 734
            MTR E+ A KDKVALEK RL  RAG+AA+  RDNLPPEGVSLTE  P AAGFIADADRFH+D VGEE +RR A+HER  QI ++RR+ + +REE RW +M                EG K+KKN SG+PY+MISL Y  G DG RL + D +T+HRA +RSN L+RLGD R GYNI++G P     DPP P    A A         HW  H
Sbjct:    1 MTRAEQLATKDKVALEKQRLFNRAGRAAREYRDNLPPEGVSLTEAHPGAAGFIADADRFHTDVVGEELVRRTAEHERRQQIVDHRRRQKQDREENRWTEMRXXXXXXXXXXXXXXXEGVKAKKNASGIPYDMISLTYRKGADGARLRHDDALTQHRAALRSNQLSRLGDGRSGYNIISGAPCAPRADPPRPLSQAAPAXXXXXXXGAHWMAH 212          
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Match: A0A8J2S6E6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6E6_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.630e-52
Identity = 99/209 (47.37%), Postives = 144/209 (68.90%), Query Frame = 3
Query:   93 ESAFGFRNIKPMTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENRRQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNITKHRAQVRSNNLTRLGDSRCGYNILTGQPREEILDPPVPKPSDAVA 719
            +SA GFRNI PMTR ERR+ +DKVALEK RLM+R G AA+M+R+N P     L     +AAGF +DADRFH+D  GEE L+R+A++ER       +R+ RV++EE+RW  +++++  ++  W+  R+ G K KKNKS VPY+ ++L+Y  GLDG+RL   D+  ++RA +RS NL   G+SRCGY+IL G+ + ++  P  P+P   +A
Sbjct:   10 KSANGFRNILPMTRSERRSQRDKVALEKDRLMKRTGLAARMHRENAPRTSDGLVVPEANAAGFCSDADRFHTDVAGEEFLKRRARYEREQTNYATKREGRVKQEEQRWAALQEEKQQEDAYWSNQREIGVKDKKNKSSVPYDALTLQYAPGLDGERLRLHDDKIRYRAALRSRNLQTKGESRCGYDILNGRDKPDLRLPEEPQPQRELA 218          
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Match: A0A7S4ECF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECF0_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.920e-51
Identity = 101/215 (46.98%), Postives = 142/215 (66.05%), Query Frame = 3
Query:   75 PTMELPESAFGFRNIKPMTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENRRQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNITKHRAQVRSNNLTRLGDSRCGYNILTGQPREEILDPPVPKPSDAVA 719
            P +    ++  FRNIKP TR ER AL+DKVALEK RLM+R G AAKM R+N P     L    PDAAGF+AD+DRFH+D  GE+ LRR A+ ++     E+ R  R + EE+RW  +++++ ++E  W   R  G K+K+N S VP++M++L+Y+D LDG+RL Y D+  ++RA VRS+NL + G SR GY+ILTG     +  P  P+ S A+A
Sbjct:   22 PILAASPTSSPFRNIKPKTRQERAALRDKVALEKDRLMKRTGLAAKMYRENAPDTSDGLVVPRPDAAGFMADSDRFHTDVAGEDKLRRDAKIKQDYLRREHTRLERAKAEEQRWARIQQEKANEEANWLAERQAGIKAKRNASSVPFDMVTLQYHDSLDGERLRYHDDKVRYRAAVRSSNLLKNGGSRAGYDILTGGDVRGLQKPSYPQASGALA 236          
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Match: A0A067C5C9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5C9_SAPPC)

HSP 1 Score: 139 bits (349), Expect = 8.300e-37
Identity = 79/191 (41.36%), Postives = 125/191 (65.45%), Query Frame = 3
Query:  108 FRNIKPMTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENRRQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNITKHRAQVRSNNLTRLGDSRCGYNILTGQPREEI 680
            F+NI   TR ER+A++DK  LEK RL  R     +++       G ++T   P + GF++DADRFH+D  GEE + R+++H +   + +++R+    RE++RW+ M+ K  +++QRW+ LRD+G K+++NK+   YN+++L+YNDG DG+RL  ADN  +HRA VR+ NL +  +SR G N +TG P   I
Sbjct:    3 FKNISARTRDERKAVRDKETLEKDRLKARKEGFIRVDTSI---SGSAMTVQAPGSQGFMSDADRFHTDVAGEEKVLRESRHAKHQLVYDHKRRDNQLREDQRWKTMDAKAAEEKQRWDRLRDDGGKARRNKASCDYNLVTLKYNDGKDGERLMKADNEIRHRATVRAANL-QFQNSRAGINPITGDPIARI 189          
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Match: A0A1W0A626_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A626_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.480e-36
Identity = 78/193 (40.41%), Postives = 123/193 (63.73%), Query Frame = 3
Query:  102 FGFRNIKPMTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENRRQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNITKHRAQVRSNNLTRLGDSRCGYNILTGQPREEI 680
              F+NI   TR ER+A++DK   EK RL  R     +++       G ++T   P + GF++DADRFH+D  GEE + R+++  +   + +N+RQ    REE+RW+ M+ K  ++ QRW+ +R++G K+++NKS   +N+++L+YNDG DGDRL+ AD+  +HRA VR+ NL +  +SR G N +TG P   I
Sbjct:    1 MSFKNINARTRDERKAVRDKETWEKDRLKARKEGYVRIDTSI---SGSAMTVQAPGSQGFMSDADRFHTDVAGEEKVVRESRMAKHQMVYDNKRQNNQIREEQRWKTMDAKAAEERQRWDRMREDGGKARRNKSSCEFNLVTLKYNDGKDGDRLKKADSEIRHRATVRAANL-QFQNSRAGINPITGDPIARI 189          
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Match: A0A1V9YB29_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YB29_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.800e-34
Identity = 76/187 (40.64%), Postives = 122/187 (65.24%), Query Frame = 3
Query:  108 FRNIKPMTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENRRQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNITKHRAQVRSNNLTRLGDSRCGYNILTGQP 668
            F+NI   TR ER+A++DK   EK RL  R     +++       G ++TE    + G+++DADRFH+D  GEE + R+++  +   + +++RQ    REE+RW+ M+ K  +++QRW+ LRD+G K+++NKS   +N+++L+YNDG DG+RL  AD+  +HRA VR+ NL +  +SR G N +TG P
Sbjct:    3 FKNINARTRDERKAVRDKETWEKDRLRARKEGFIRVDTSI---SGAAMTEQAHGSQGYMSDADRFHTDVAGEEKVARESRTAKHQLVYDHKRQNNQLREEQRWKAMDAKSAEEKQRWDRLRDDGGKARRNKSSCDFNLVTLKYNDGKDGERLMKADSEIRHRAAVRAANL-QFQNSRAGINPITGDP 185          
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Match: A0A5D6XHU2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHU2_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.390e-33
Identity = 83/192 (43.23%), Postives = 110/192 (57.29%), Query Frame = 3
Query:  105 GFRNIKPMTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENRRQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNITKHRAQVRSNNLTRLGDSRCGYNILTGQPREEI 680
             F NI   TR +R AL+DK   EK RL QR     +++       G ++      + GF++DADRFHSDT GEE   R+ +H RT    E RR   V+RE  RW+DM+     +EQRW  LR  G K+ +NK G  +N ++L+Y+DG DG RL  AD   KHRA VR+ NL    +SR G N +TG+P   I
Sbjct:    3 AFNNIPACTREQRGALQDKEQREKERLRQRKEGFVRVDTS---AAGSAMIVYAATSQGFMSDADRFHSDTAGEERAHREERHARTQSQLERRRYNSVQREVARWKDMDAAGAAEEQRWRTLRQSGTKALRNKCGEAFNPVTLQYSDGKDGQRLRAADQAVKHRAVVRAQNLQHH-NSREGINPITGEPVRRI 190          
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Match: A0A7S3HCK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCK9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.610e-33
Identity = 69/139 (49.64%), Postives = 96/139 (69.06%), Query Frame = 3
Query:   87 LPESAFGFRNIKPMTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENRRQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKS 503
            +P SA+GFR+I+P TR ERR  KDKVALEK R+ QR G  A+M++ N P     LT CT DA G++++ADRFH+DTVGEE+  R+   +R  Q NE RR    +R+E RW   E+K+  +++ W  LR++G K+KKN+S
Sbjct:   20 VPPSAYGFRSIRPKTRAERRGQKDKVALEKNRINQRVGWQARMHQQNAPETSALLTSCTQDAVGYLSNADRFHTDTVGEEYALRQQALQRRYQANEYRRNQSFKRDEDRWNQNEEKQQKEDEAWRKLREDGSKAKKNQS 158          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1825.5655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVW2_ECTSI1.600e-13696.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XXX1_9STRA5.930e-6559.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z1N9_9STRA2.180e-6054.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2S6E6_9STRA2.630e-5247.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4ECF0_9STRA4.920e-5146.98Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A067C5C9_SAPPC8.300e-3741.36Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1W0A626_9STRA4.480e-3640.41Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9YB29_9STRA2.800e-3440.64Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A5D6XHU2_9STRA5.390e-3343.23Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3HCK9_9STRA6.610e-3349.64Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1825contigEcto-sp13_S_contig1825:6842..10450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score132.9
Seed ortholog evalue1.9e-28
Seed eggNOG ortholog42099.EPrPV00000018865
Model size876
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Source PGD
EggNOG OGs1MHF2@121069,2CUJ5@1,2S4E6@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002360.1
Cds size669
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1825.5655.1prot_Ecto-sp13_S_contig1825.5655.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1825 6922..10323 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462940.5990348-UTR-Ecto-sp13_S_contig1825:6841..69211681462940.5990348-UTR-Ecto-sp13_S_contig1825:6841..6921Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1825 6842..6921 +
1681462940.6860971-UTR-Ecto-sp13_S_contig1825:10323..104501681462940.6860971-UTR-Ecto-sp13_S_contig1825:10323..10450Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1825 10324..10450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462940.6108365-CDS-Ecto-sp13_S_contig1825:6921..69511681462940.6108365-CDS-Ecto-sp13_S_contig1825:6921..6951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 6922..6951 +
1681462940.6197767-CDS-Ecto-sp13_S_contig1825:7135..72161681462940.6197767-CDS-Ecto-sp13_S_contig1825:7135..7216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 7136..7216 +
1681462940.6282587-CDS-Ecto-sp13_S_contig1825:7930..80271681462940.6282587-CDS-Ecto-sp13_S_contig1825:7930..8027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 7931..8027 +
1681462940.635763-CDS-Ecto-sp13_S_contig1825:8525..86231681462940.635763-CDS-Ecto-sp13_S_contig1825:8525..8623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 8526..8623 +
1681462940.6434803-CDS-Ecto-sp13_S_contig1825:8959..91051681462940.6434803-CDS-Ecto-sp13_S_contig1825:8959..9105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 8960..9105 +
1681462940.6617649-CDS-Ecto-sp13_S_contig1825:9781..98861681462940.6617649-CDS-Ecto-sp13_S_contig1825:9781..9886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 9782..9886 +
1681462940.6719768-CDS-Ecto-sp13_S_contig1825:10211..103231681462940.6719768-CDS-Ecto-sp13_S_contig1825:10211..10323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1825 10212..10323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1825.5655.1

>prot_Ecto-sp13_S_contig1825.5655.1 ID=prot_Ecto-sp13_S_contig1825.5655.1|Name=mRNA_Ecto-sp13_S_contig1825.5655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp
MELPESAFGFRNIKPMTRPERRALKDKVALEKGRLMQRAGQAAKMNRDNL
PPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERTVQINENR
RQLRVEREEKRWEDMEKKEGDDEQRWNWLRDEGEKSKKNKSGVPYNMISL
RYNDGLDGDRLEYADNITKHRAQVRSNNLTRLGDSRCGYNILTGQPREEI
LDPPVPKPSDAVAHWSHHQGGC*
back to top

mRNA from alignment at Ecto-sp13_S_contig1825:6842..10450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1825.5655.1 ID=mRNA_Ecto-sp13_S_contig1825.5655.1|Name=mRNA_Ecto-sp13_S_contig1825.5655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1825:6842..10450+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGACGAATCCTGGTGAAGCCCCAATTACGCCAGAGGGTGGTTCCTAC AATCTTTAGGTTCATCGCCCCGTGCCCACCATGGAGCTACCAGAGAGCGC CTTCGGTTTCGTAAGTCTTGTGTCCTGCTGAATATTTGGTCTCCCGTGCC AGCCAAACGCCAGGCTCGCCCGTGTTTGAGTATTGTCTTCGTCGTGATCG TCACGCAGAGGGAAACTATTTGTCAACATAATCCATATCTATTTTCTAGC TTGCTATATACCACCCTACCTTACTCTTCTACCTGTTGTCTCAGCGGAAC ATCAAGCCGATGACAAGACCAGAGCGGAGGGCGCTCAAAGACAAGGTTGC TCTCGAAAAGGGAAGGTTGATGCAGGTGAGCCAGAGTCGCATCTCGAAGT GGCTACATTACCTGCTGCAGATCATATATCGACGTTCGCACATGTCCGCA TACATATGCACTGAACGTGGGCGTCGAACAGATGCTAAGGATACAATCAC AAAATGGCGCCACTAACATTGAGCCCAAGTCGGACCTTCTTTTTCACACC CAATGAAAGGGCCCGCCGGCGGATGGATACATCCTCTCACGCTGTACTAA GTGCAGTGTGAGTGGATGACTTGCCGCAACAAGAGTCCACGCGTCGGTAT GGCATCTTCCGACCATTCCTAGATTGCAAGTCTTTGGTGTTTACGCCCTG CAGTCGGCCATCGCGCAACATGCGCAATGTGCCACGGAATGATTTGATTG TTGACAATCCGACCCGCACGCGTGAGATTCGATCAAACTTTCCGAATTTG TATGCATAGTCTACAACAGCCAGCACGGGAGCCGACAAGCAGCCGCCACC TGTCTGTGCGATCATATTGTTTTCACCTTGCAGAAGGTGCCACTTGATAC CGCAGCAGTGACATGTATACTACCCATTTCGTACAGTGGATAAGTTTATG GTCTTCATGAGTGCCTGTAGCGCCAAAGCCCTAAAATGGCAATTGCGCAA AATATAGCAGATTTCCGCAGTACCACACTGCAGTAGTGTGAAACCCGGCT CACCCTGTACGCGTGTGGTAACGACGTTGGTGTGCGCAGAGGGCAGGGCA AGCAGCTAAGATGAATCGCGATAACCTCCCGCCAGAAGGGGTCTCGCTCA CCGAGTGCACACCTGACGCGGCCGGCTTCATTGCTGGTGGGTGGACACGC ACTGGAAGACAGGAGGCGGTGGTCCCACAGGCAACTTTTTTCAATGTTGG GAACCTTTTGGCGATCTTGAGCCCACAATTTAGTGACGCTCAAGTGATTG CTCTCCGCCCGAAGAGATTATTGGAAGAACCACGGATGGGTTGTAGAGGT ACTTAATTGAACGTTTTTCGGAGAAACGCCGTGCTTCGTGGATTACCCCA ACCACAAGGAAACAACGGGTAACGCAACCCACCGAGTAGGCGGGAATCTC GGCGTTCGCTGGGGAGCGGCTCGCACCAAAATCGGGCATACCGGTATATT CAGCGCTCTTCCACACCGAGTAGGCGGGAATCTCGGCGTTCGCTAGGGAG CGGCTCGCACCAAAATCGGGCATACCGGTATATTCAGCGCTCTTCCAGAT TTCTATCTGCAACCCTTCTTGATCTACGAATACTTGCCGTTGTCACCAAA CTTCCACCATCAATTTCCGGATGCTCCTACGTAGATGCTGATCGGTTTCA CTCGGACACGGTGGGGGAGGAGCACCTACGCCGAAAGGCGCAGCACGAGA GAACGGTCCAAATAAACGAGAACCGCAGGCAGGTATGAAGAATATTGTCA ACGCGTTCCGAGCATCAAGATATGCGGCACCCTGCTTAATGCGTGAATGT TGTGCCTGGCACTGCATTGTTTACGTGAACCTGCGGTCGGTCACCACCAG AGGAGGAGATTGCAGAGCGCCTTCATACTGTGGTTATTTCTCGTGTTCCG GTCCGGGTAAACGACACTGCGTGTGTGTGTATGTTGCCATGAGCCACACC GTTTTGGTGCCCCACGTCAGCGCCGGGGTTCGCGGGGCATGGGCGGCGTC GTTCCAACAAAATTAGCAACCCTGTTTGCTCTCGTTGACTTTTCGGACGA CACCATTACTTGCATCAGTTGCGAGTGGAACGAGAAGAGAAGCGTTGGGA AGACATGGAGAAAAAGGAGGGGGACGACGAGCAGAGGTGGAACTGGCTTC GAGATGAGGGGGAAAAGAGCAAGAAAAACAAATCGGGGGTGCCGTACAAC ATGATCAGCCTCAGGTGAGTAACTGACACAAGGACTGCCTGCAGGGTGGG ATGAGAACACGCCAGCCCAGGTGCCATTCGTAGATTATTTCCAGTCTCGT ATACCGCACTCGCTCACGATGTCAACACACCGATCACATGGAAACCATGA AAACTGGCCTATTTTCATTCTTCATGGCGCCCGTGATTGCCGGTGCAAGT GGGCTACATTGAGAAAATCTCACGCACGATATGTTTTCTCGAGGCACATT CTGCGTAGCGTTCAAACAACTGTGGGCGCACCGAAAGCAGTTCAGTTGGG AGCAACACGCTCGTAAACATTCGACCCACCTCGCGATNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTAGATGT AAGCCGCCATCCTTCTCACCAAATACTTTCTCTTCTGCAGGTACAATGAC GGCCTTGACGGGGACCGGCTAGAGTACGCCGACAACATCACCAAGCACAG GGCTCAAGTCAGATCCAACAATCTAACCCGCCTTGGGGACTCGAGGTGAG CGGCACCACGTTGCTATGGTGGCGACCCCTTGAAAAAGTTGGGATAACAC GTGGGCAGTTTTAGCAGCTGGTGTCGCCTCTTTGGGTACTCAAGAGAGAG ACAGCAGTATTCGACTGTGTTGACATTGTTTGTCCAGGCAAAATTTTCCT GTGTCGGGGGTCCAGCGTTGGTCGTCCCCATCGTGACAATGACCAAAACC TAGCAGACTTCTTTCAATCGAACGCAGAGTATGTCTGATGCGCTCCCACC ACTTCAGCTGGACATGTCTGCCAGTTTACACCACACACAAGATTTGCTTC TCTCTCGCTCTGGACGACAGGTGCGGATACAACATCTTGACAGGGCAACC GAGGGAGGAGATATTAGACCCGCCGGTGCCCAAGCCAAGCGACGCCGTCG CACATTGGAGCCATCACCAGGGGGGGTGCTAGACCGGCGGGGGGCGTCAG CTCAATGCCGTCGGGGCTTGGTTAGGGACGGGCGTATCTCACCCACCTTA CAGATGGAACGCATGCTGTATCTCGGCGATTTTCTCTTAAAAATTAACTA GCACGTGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1825:6842..10450+

>mRNA_Ecto-sp13_S_contig1825.5655.1 ID=mRNA_Ecto-sp13_S_contig1825.5655.1|Name=mRNA_Ecto-sp13_S_contig1825.5655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1825:6842..10450+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCTACCAGAGAGCGCCTTCGGTTTCCGGAACATCAAGCCGATGAC
AAGACCAGAGCGGAGGGCGCTCAAAGACAAGGTTGCTCTCGAAAAGGGAA
GGTTGATGCAGAGGGCAGGGCAAGCAGCTAAGATGAATCGCGATAACCTC
CCGCCAGAAGGGGTCTCGCTCACCGAGTGCACACCTGACGCGGCCGGCTT
CATTGCTGATGCTGATCGGTTTCACTCGGACACGGTGGGGGAGGAGCACC
TACGCCGAAAGGCGCAGCACGAGAGAACGGTCCAAATAAACGAGAACCGC
AGGCAGTTGCGAGTGGAACGAGAAGAGAAGCGTTGGGAAGACATGGAGAA
AAAGGAGGGGGACGACGAGCAGAGGTGGAACTGGCTTCGAGATGAGGGGG
AAAAGAGCAAGAAAAACAAATCGGGGGTGCCGTACAACATGATCAGCCTC
AGGTACAATGACGGCCTTGACGGGGACCGGCTAGAGTACGCCGACAACAT
CACCAAGCACAGGGCTCAAGTCAGATCCAACAATCTAACCCGCCTTGGGG
ACTCGAGGTGCGGATACAACATCTTGACAGGGCAACCGAGGGAGGAGATA
TTAGACCCGCCGGTGCCCAAGCCAAGCGACGCCGTCGCACATTGGAGCCA
TCACCAGGGGGGGTGCTAG
back to top