prot_Ecto-sp13_S_contig18235.5650.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18235.5650.1
Unique Nameprot_Ecto-sp13_S_contig18235.5650.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length139
Homology
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: D8LEP4_ECTSI (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP4_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.560e-18
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 0
Query:    1 MSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTNENIENI 134
            +SGD RQ+ PV+ +G  +E V+ + +SS LW +V    LT S RD+ED P A  V  IG GA      +DG   +PL +             IE       L++ +YPD+L AD   +  R IL+ TN+ I+ I
Sbjct:   31 LSGDMRQIGPVVVYGGQAERVDASIISSPLWPYVHRMRLTISQRDREDAPYAAFVRNIGIGAQPHTTTDDGIDAVPLVYIHDIPAMPPDPFVIENTESFQELINFVYPDILHADPTTFKSRAILSSTNDTIDTI 164          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH)

HSP 1 Score: 73.2 bits (178), Expect = 2.150e-12
Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = 0
Query:    1 MSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTN 128
            ++GD+RQ+ P++  GTPSE++  +  + + WKH+K + L    R  +D    +T+L IGEG I+  ++E G +VIPL               I+ +   T L+D ++P  +  D +    R IL+ TN
Sbjct:  301 LTGDFRQIPPIVPNGTPSEVIAASIKNCYFWKHIKKYHLKLCQRTLDDPHFTETILDIGEGKIESQDVE-GVSVIPLRD-------------IDHVVTTTELIDFVFPKEILKDPDLCCCRAILSGTN 414          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI001E691748 (uncharacterized protein LOC123890262 n=5 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E691748)

HSP 1 Score: 72.8 bits (177), Expect = 3.200e-12
Identity = 45/145 (31.03%), Postives = 74/145 (51.03%), Query Frame = 0
Query:    1 MSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPN---------AQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENI 134
            + GD+RQ+ PV++ G+ SE+V     SS LWKH K   LT +MR K D  +         A+ +L IG+G +   E  +    +P           ++ C ++    L  LVD +YP++++    +N + D  ILAPT E ++ +
Sbjct: 1254 LGGDFRQILPVIRKGSRSEVVRATISSSKLWKHCKVLKLTKNMRLKGDFTDNSESDLKEFAEWILKIGDGLLNGDENGEAEIQVP-----------EELCVVQADKPLMDLVDFVYPNIVNDIGKNNFFKDEAILAPTLEIVKEV 1387          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI001E6935D4 (uncharacterized protein LOC123922418 n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E6935D4)

HSP 1 Score: 70.1 bits (170), Expect = 2.800e-11
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 0
Query:    1 MSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLP-NAQT--------VLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENI 134
            + GD+RQ+ PV++ G+ SE+V     SS LWKH K   LT +MR K D   N++T        +L IG+G +   E  +    IP           ++ C +     L  LVD +YP++++    +N + D  ILAPT E ++ +
Sbjct: 1472 LGGDFRQILPVIRKGSRSEVVRATISSSKLWKHCKVLKLTKNMRLKGDCTDNSETELREFADWMLKIGDGLLDGDENGEAEIQIP-----------EELCVLNNDKPLLSLVDFVYPNIVNDIGKNNFFQDEAILAPTLEIVKEV 1605          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: A0A1C7LQY9_GRIFR (ATP-dependent DNA helicase n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7LQY9_GRIFR)

HSP 1 Score: 64.7 bits (156), Expect = 2.210e-10
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 0
Query:    3 GDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTNENI 131
            GD+RQ  PV+K+G   +IV+ + +SS LWK    + L   +R+ EDLP A  V +IG+GA   I L+                       ++ + +   L+D +YPD +  D      R ILAPTN  +
Sbjct:   25 GDFRQTCPVVKYGNRKQIVDSSIMSSPLWKGFSIYRLHQPIRNAEDLPYADFVDSIGDGAGPNIFLD----------------------MLDKVDNKDELIDFVYPDDVLRDPVRCLKRAILAPTNAQV 131          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: J4H1I3_9APHY (ATP-dependent DNA helicase n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4H1I3_9APHY)

HSP 1 Score: 66.2 bits (160), Expect = 5.890e-10
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 0
Query:    3 GDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTNENIE 132
            GD+RQ  PV++ GT  +IV  + LSS LW+    + LT  +R+ ED+P A+ V +IG+GA   + L+                       +  ++    L+D +YP    AD      R ILAPTN+ ++
Sbjct:  344 GDFRQTCPVIRHGTRRQIVNASILSSPLWRQFSLYRLTQPVRNAEDMPFAEFVDSIGDGAGPHVPLD----------------------MLGKVSHRDELIDFVYPQTTLADPVKCLKRAILAPTNDQVD 451          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI001C45DA9B (uncharacterized protein LOC121875094 n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C45DA9B)

HSP 1 Score: 65.1 bits (157), Expect = 1.180e-9
Identity = 46/141 (32.62%), Postives = 77/141 (54.61%), Query Frame = 0
Query:    1 MSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMR-----DKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDL-LSADH-NCYSDRGILAPTNENIENI 134
            +SGD+RQ+ PV+K GT + IV+ +   S+LW+HV    LTT+MR     D +    +  +L IG+G +  +E+ D T ++P           +    +E + DL     R+YPDL L+  H +  ++R I++P N N+  +
Sbjct:   48 LSGDFRQILPVVKNGTRANIVDASLKESYLWRHVFVKKLTTNMRAHMTGDSDSANFSNLLLTIGDGHLPYVEVPD-TILVP----------EELGKCVEKLEDLKA---RVYPDLSLNGKHPDWLAERAIVSPLNANVNKL 174          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: A0A8I6YMD2_HORVV (ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6YMD2_HORVV)

HSP 1 Score: 63.9 bits (154), Expect = 2.730e-9
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 0
Query:    2 SGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQP-----IELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENIKI 136
            SGD+RQV PV++ G+ S+I++    SSHLWK ++   L T+MR   D   A  +L +G G  +      I+L +   V P +  M                D+  L+D ++P L    +D N  +   IL+ TN+N++ I +
Sbjct:   20 SGDFRQVLPVVRRGSHSQIIDATLRSSHLWKGMRQLRLVTNMRAHNDTWFADYLLRVGNGTEEANNHGNIQLREDICV-PSTGEMN---------------DIEKLIDHVFPGLDENMSDRNYMTCHAILSTTNDNVDKINL 145          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: A0A4Y9YJY4_9APHY (ATP-dependent DNA helicase n=2 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9YJY4_9APHY)

HSP 1 Score: 64.3 bits (155), Expect = 2.770e-9
Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 0
Query:    3 GDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGA--IQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTNENIE 132
            GD+RQ  PV+ +G   +IV  +  SS LW+H     LT  +R+ EDLP A  V +IG+GA  + P+++                        ++ + +  HL+D +YP    AD      R ILAPTN  ++
Sbjct:  330 GDFRQTCPVIPYGNRRQIVGASIRSSALWQHFAVRRLTQPIRNAEDLPFADFVDSIGDGAGPLVPLDI------------------------LQRVEERDHLIDFVYPPDALADPAKCLKRAILAPTNSQVD 437          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.690e-9
Identity = 41/133 (30.83%), Postives = 65/133 (48.87%), Query Frame = 0
Query:    1 MSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGI-LAPTNENIE 132
            +SGD RQ+ PV+K G P+E ++ + +SS LW HV+   LT S R +     A T              +DG   +PL++     D  +    I+       L+D +Y D+L+AD   +  R I L P + N++
Sbjct:  120 LSGDLRQIGPVVKHGGPAETIDASLISSPLWPHVQRMRLTISQRTQ-----AHTTT------------DDGIDAVPLAYIHEVPDSPKDQFFIDNTDSFEELIDFVYQDILTADPTDFKARAICLDPHDNNLD 235          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEP4_ECTSI3.560e-1836.57ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A2G3AQD7_CAPCH2.150e-1232.03ATP-dependent DNA helicase n=1 Tax=Capsicum chinen... [more]
UPI001E6917483.200e-1231.03uncharacterized protein LOC123890262 n=5 Tax=Trifo... [more]
UPI001E6935D42.800e-1132.41uncharacterized protein LOC123922418 n=1 Tax=Trifo... [more]
A0A1C7LQY9_GRIFR2.210e-1032.56ATP-dependent DNA helicase n=1 Tax=Grifola frondos... [more]
J4H1I3_9APHY5.890e-1031.54ATP-dependent DNA helicase n=1 Tax=Fibroporia radi... [more]
UPI001C45DA9B1.180e-932.62uncharacterized protein LOC121875094 n=1 Tax=Homar... [more]
A0A8I6YMD2_HORVV2.730e-930.99ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare... [more]
A0A4Y9YJY4_9APHY2.770e-931.82ATP-dependent DNA helicase n=2 Tax=Fomitopsis rose... [more]
A0A6H5JNR7_9PHAE4.690e-930.83ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010285DNA helicase Pif1-likePFAMPF05970PIF1coord: 2..134
e-value: 4.0E-13
score: 49.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18235contigEcto-sp13_S_contig18235:3082..3498 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18235.5650.1mRNA_Ecto-sp13_S_contig18235.5650.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18235 2873..3522 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18235.5650.1 ID=prot_Ecto-sp13_S_contig18235.5650.1|Name=mRNA_Ecto-sp13_S_contig18235.5650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLP
NAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLT
HLVDRIYPDLLSADHNCYSDRGILAPTNENIENIKISY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like