mRNA_Ecto-sp13_S_contig18231.5649.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 275 bits (702), Expect = 2.810e-83 Identity = 132/152 (86.84%), Postives = 136/152 (89.47%), Query Frame = 1
Query: 46 MVALNETCGGKKWYISTVQLQLASVEFCVACRSVSTLHLTVEQGTPRHLWADNWSDKSDARWSSSGGSSDGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDAVERGGDRFDGVALPRGLKSVVFGRWCYQHVDKVLWAAS 501
MVALNET GGK+WYISTVQLQLASVEFCVACRSVSTLHLTVE+GTPRHLWAD WSD+SD GRSVLVRVPPFRPREVTWNLPPSMLSEASKDAF NLEC+SFSDAVER GD FDGVALPRGLKSVVFGRWCYQHVDKVLWAAS
Sbjct: 1 MVALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLKSVVFGRWCYQHVDKVLWAAS 152
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Match: D8LF50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF50_ECTSI) HSP 1 Score: 119 bits (299), Expect = 3.430e-27 Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 1
Query: 325 MLSEASKDAFTNLECLSFSDAVERGGDRFDGVALPRGLKSVVFGRWCYQHVDKVLWAAS 501
MLSEASKDAFT LECLSFSDAVER GDRFDGV LPRGLKSVVFGRWCYQHVDKVLWAAS
Sbjct: 1 MLSEASKDAFTKLECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQHVDKVLWAAS 59
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI) HSP 1 Score: 110 bits (274), Expect = 8.060e-24 Identity = 61/146 (41.78%), Postives = 83/146 (56.85%), Query Frame = 1
Query: 19 GNSRCIGAFMVALNETCGGKKWYISTVQLQLASVEFCVACRSVSTLHLTVEQGTPRHLWADNWSDKSDARWSSSGGSSDGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDAVERGGDRFDGVALPRGLKSVVFG 456
G+S+C+ AF+VAL+ TC G+KWY ST QLQLAS++ C ACR V TL L+VE+ TP +LWA+ + + + RVPPF PR V W L L A K+ + N++CL F+ DG + P GLK + G
Sbjct: 8 GDSQCLEAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWAE--AARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRARELGLARKELWANVQCLLFTGY--HNDWVCDGFSWPTGLKRLDLG 149
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 106 bits (265), Expect = 5.080e-22 Identity = 61/158 (38.61%), Postives = 84/158 (53.16%), Query Frame = 1
Query: 13 VAGNSRCIGAFMVALNETCGGKKWYISTVQLQLASVEFCVACRSVSTLHLTVEQGTPRHLWADNWSDKSDARWSSSGGSSDGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDAVERGGDRFDGVALPRGLKSVVFGRWCYQHVDKV 486
+AG SRC+ AF VALN+ C G WY+ST QLQL+S+ FCVACRSV T+HL V++ TP L++ D A G S R + RVP R R+VTW L + +++E DAV D D G++S+ G+ Q + +
Sbjct: 24 IAGPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSG---DDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLS-GETPRCTGVGLSSVELFVLGDAVN---DSMDEAVWSDGMRSLSLGQMFDQPISNL 174
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI) HSP 1 Score: 104 bits (259), Expect = 2.890e-21 Identity = 63/157 (40.13%), Postives = 83/157 (52.87%), Query Frame = 1
Query: 25 SRCIGAFMVALNETCGGKKWYISTVQLQLASVEFCVACRSVSTLHLTVEQGTPRHLWADNWSDKSDARWSSSGGSSDGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDAVERGGDRF----DGVALPRGLKSVVFGRWCYQHVDK 483
SRC+ A +VAL G+ WY T QLQLAS++FC ACR+V T+HLTV+ P L A +GG+S RVP FRPR VTWN P + L D F ++ L + R G RF DG+ LP L+ + FG+W + + K
Sbjct: 83 SRCLDALIVALTNAGDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTVDGDVPARLKAG----------IDNGGAS-------RVPAFRPRCVTWNKPIAAL-RGEDDVFADVRVLVLGHGLGRVGVRFNRWVDGLQLPPALQDLTFGQWYDRPIHK 221
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.240e-20 Identity = 57/141 (40.43%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 31 CIGAFMVALNETCGGKKWYISTVQLQLASVEFCVACRSVSTLHLTVEQGTPRHLWADNWSDKSDARWSSSGGSSDGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDAVERGGDRFDGVALPRGLKSVVF 453
C+ A +VALNETC GK WY ST +LQLAS++FC+ACR+ T+HL V++ PR L A + + R RVP R R VTWN+P + A T++E L F DA GD + V P L+++ F
Sbjct: 51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLAS----------ADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAF---GDSLEAVPWPEHLRTMEF 178
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 7.830e-19 Identity = 61/150 (40.67%), Postives = 77/150 (51.33%), Query Frame = 1
Query: 19 GNSRCIGAFMVALNETCGGKKWYISTVQLQLASVEFCVACRSVSTLHLTVEQG-TPRHLWADNWSDKSDARWSSSGGSSDGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDA---VERGGDRFDGVALPRGLKSVVFG 456
G RC+ AF VALN +C G WY ST +LQLAS++FCV CR V +LHL V P LW D+ + ++AR + R VP FRPREVTW P +LS+ CL F+ + R D V P LK + FG
Sbjct: 3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAA--TEARTGAK------RPSTTPVPVFRPREVTWGRPAWLLSDI---------CLVFAKVERFLVRQDTVVDDVVWPCRLKKLFFG 135
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Match: A0A6H5JF56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 2.440e-18 Identity = 58/158 (36.71%), Postives = 77/158 (48.73%), Query Frame = 1
Query: 10 LVAGNSRCIGAFMVALNETCGGKKWYISTVQLQLASVEFCVACRSVSTLHLTVEQGTPRHLWADNWSDKSDARWSSSGGSSDGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDAVERGGDRFDGVALPRGLKSVVFGRWCYQHVDK 483
L G +RC+ AF+VALN++C GKKWY S LQLAS+ FCVACR+V LTV++GTP LW + + + + RVP R REV W L +R DG+ALP L+ + FGR Q +D+
Sbjct: 29 LQPGLNRCLDAFVVALNQSCDGKKWYTSIAGLQLASLAFCVACRNVLAPCLTVDKGTPLRLWCGPCTTPLEVL-----------TTVTRVPAIRVREVVWKLT----------------------------ERKDGIALPSSLRRITFGRDFNQRIDR 147
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 2.470e-18 Identity = 62/161 (38.51%), Postives = 80/161 (49.69%), Query Frame = 1
Query: 25 SRCIGAFMVALNETCGGKKWYISTVQLQLASVEFCVACRSVSTLHLTVEQGTPRHLWADNWSDKSDARWSSSGGSSDGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDAVERGGDRFDGVALPRGLKSVVFGRWCYQH--VDKVLWAAS 501
S C+ VALNETC GK WY ST +LQLAS+E C+ACR TLHLTV+ TPR L A + + R RVP R R TWN+P + S A +++ L F A D + PR LK++ F + + +D V W AS
Sbjct: 134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAA----------ADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGS---LDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPAS 281
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.260e-16 Identity = 63/168 (37.50%), Postives = 84/168 (50.00%), Query Frame = 1
Query: 22 NSRCIGAFMVALNETCGGKKWYISTVQLQLASVEFCVACRSVSTLHLTVEQGTPRHLWADNWSDKSDARWSSSGGSSDG------RSVLVRVPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDAVERGGDRFDGVALPRGLKSVVFGRWCYQH--VDKVLWAAS 501
++ C+ A VAL ET GK WY ST +LQLAS+EFC+ACR+ TLHL V+ PR L A ++DG R RVP R R VTWN+P + + A +L+ L F A E + V PR L+S+ F + + +D V W AS
Sbjct: 33 SNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLA----------------AADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGS---LEAVTWPRRLESIAFHNFSPFNTPIDLVKWPAS 181 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18231.5649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18231.5649.1 >prot_Ecto-sp13_S_contig18231.5649.1 ID=prot_Ecto-sp13_S_contig18231.5649.1|Name=mRNA_Ecto-sp13_S_contig18231.5649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=499bp MYVLVAGNSRCIGAFMVALNETCGGKKWYISTVQLQLASVEFCVACRSVSback to top mRNA from alignment at Ecto-sp13_S_contig18231:1735..3231- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18231.5649.1 ID=mRNA_Ecto-sp13_S_contig18231.5649.1|Name=mRNA_Ecto-sp13_S_contig18231.5649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18231:1735..3231- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18231:1735..3231- >mRNA_Ecto-sp13_S_contig18231.5649.1 ID=mRNA_Ecto-sp13_S_contig18231.5649.1|Name=mRNA_Ecto-sp13_S_contig18231.5649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18231:1735..3231- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |