prot_Ecto-sp13_S_contig18223.5645.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18223.5645.1
Unique Nameprot_Ecto-sp13_S_contig18223.5645.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length249
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18223.5645.1 vs. uniprot
Match: A0A6H5J947_9PHAE (PAP2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J947_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.660e-26
Identity = 65/87 (74.71%), Postives = 66/87 (75.86%), Query Frame = 0 
Query:  163 RQSPLTLSVGVGVSGAPRVLQSPRRFLCGSRSSGHSSNSNSGVGGVGGSAAGGWRGTMREMRGFLLWMAVILAHMVQVPVLWFVFWQ 249
            RQSPLTLSVGVGVSGAPRVLQSPRR LCG RS                   GGWRGTMREMRGFLLWMAVILAHMVQVP+LWFVFWQ
Sbjct:  189 RQSPLTLSVGVGVSGAPRVLQSPRRLLCGRRSXXXXXXXXXXXXXX---XXGGWRGTMREMRGFLLWMAVILAHMVQVPMLWFVFWQ 272
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BLAST of mRNA_Ecto-sp13_S_contig18223.5645.1 vs. uniprot
Match: D8LG44_ECTSI (PAP2_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG44_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 9.450e-9
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 
Query:  220 MREMRGFLLWMAVILAHMVQVPVLWFVFWQ 249
            MREMRGFLLWMAVILAHMVQVP+LWFVFWQ
Sbjct:    1 MREMRGFLLWMAVILAHMVQVPMLWFVFWQ 30
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18223.5645.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J947_9PHAE3.660e-2674.71PAP2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LG44_ECTSI9.450e-996.67PAP2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 129..159
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..225
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 226..247
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 248..249
NoneNo IPR availableTMHMMTMhelixcoord: 226..248

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18223contigEcto-sp13_S_contig18223:1991..3330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18223.5645.1mRNA_Ecto-sp13_S_contig18223.5645.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18223 1991..3330 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18223.5645.1 ID=prot_Ecto-sp13_S_contig18223.5645.1|Name=mRNA_Ecto-sp13_S_contig18223.5645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
AKSGDEEESRTLTQQQQKQQHHGRRMSRTRPLPQAMNPHHEELLMPEEQQ
WRQQHHRQRTRQDDDEQGDNAPPPVKGSSSGGGGGGSSGGSNNNNLSNGG
GSGSGSGNGSSSSSRRWRRWASSEALCGCNNEESRARKKRQQQQQLQQQR
RSNNNSQAEEQQRQSPLTLSVGVGVSGAPRVLQSPRRFLCGSRSSGHSSN
SNSGVGGVGGSAAGGWRGTMREMRGFLLWMAVILAHMVQVPVLWFVFWQ
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