mRNA_Ecto-sp13_S_contig18223.5645.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18223.5645.1
Unique NamemRNA_Ecto-sp13_S_contig18223.5645.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18223.5645.1 vs. uniprot
Match: A0A6H5J947_9PHAE (PAP2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J947_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.660e-26
Identity = 65/87 (74.71%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:  487 RQSPLTLSVGVGVSGAPRVLQSPRRFLCGSRSSGHSSNSNSGVGGVGGSAAGGWRGTMREMRGFLLWMAVILAHMVQVPVLWFVFWQ 747
            RQSPLTLSVGVGVSGAPRVLQSPRR LCG RS                   GGWRGTMREMRGFLLWMAVILAHMVQVP+LWFVFWQ
Sbjct:  189 RQSPLTLSVGVGVSGAPRVLQSPRRLLCGRRSXXXXXXXXXXXXXX---XXGGWRGTMREMRGFLLWMAVILAHMVQVPMLWFVFWQ 272
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BLAST of mRNA_Ecto-sp13_S_contig18223.5645.1 vs. uniprot
Match: D8LG44_ECTSI (PAP2_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG44_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 9.450e-9
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:  658 MREMRGFLLWMAVILAHMVQVPVLWFVFWQ 747
            MREMRGFLLWMAVILAHMVQVP+LWFVFWQ
Sbjct:    1 MREMRGFLLWMAVILAHMVQVPMLWFVFWQ 30
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18223.5645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J947_9PHAE3.660e-2674.71PAP2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LG44_ECTSI9.450e-996.67PAP2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18223contigEcto-sp13_S_contig18223:1991..3330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size747
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionSphingomyelin synthase-like domain
Ec32 orthologEc-11_002005.3
Cds size747
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.9527073-CDS-Ecto-sp13_S_contig18223:1990..24571681462939.9527073-CDS-Ecto-sp13_S_contig18223:1990..2457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18223 1991..2457 +
1681462939.9695776-CDS-Ecto-sp13_S_contig18223:3050..33301681462939.9695776-CDS-Ecto-sp13_S_contig18223:3050..3330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18223 3051..3330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18223.5645.1prot_Ecto-sp13_S_contig18223.5645.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18223 1991..3330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18223.5645.1

>prot_Ecto-sp13_S_contig18223.5645.1 ID=prot_Ecto-sp13_S_contig18223.5645.1|Name=mRNA_Ecto-sp13_S_contig18223.5645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
AKSGDEEESRTLTQQQQKQQHHGRRMSRTRPLPQAMNPHHEELLMPEEQQ
WRQQHHRQRTRQDDDEQGDNAPPPVKGSSSGGGGGGSSGGSNNNNLSNGG
GSGSGSGNGSSSSSRRWRRWASSEALCGCNNEESRARKKRQQQQQLQQQR
RSNNNSQAEEQQRQSPLTLSVGVGVSGAPRVLQSPRRFLCGSRSSGHSSN
SNSGVGGVGGSAAGGWRGTMREMRGFLLWMAVILAHMVQVPVLWFVFWQ
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mRNA from alignment at Ecto-sp13_S_contig18223:1991..3330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18223.5645.1 ID=mRNA_Ecto-sp13_S_contig18223.5645.1|Name=mRNA_Ecto-sp13_S_contig18223.5645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1340bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18223:1991..3330+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAAGTCGGGCGACGAGGAGGAATCGCGGACGCTCACTCAGCAGCAGCA
GAAGCAGCAGCACCATGGTAGACGAATGAGCCGAACCCGACCGCTGCCTC
AGGCGATGAACCCTCACCACGAAGAGCTGCTCATGCCGGAAGAACAGCAG
TGGCGACAGCAGCACCACCGGCAGCGGACAAGGCAAGACGACGACGAGCA
AGGAGACAACGCCCCCCCCCCTGTCAAGGGCAGCAGTAGCGGCGGCGGCG
GCGGCGGCAGCAGCGGCGGCAGCAACAACAACAACCTAAGTAACGGAGGA
GGCAGCGGCAGCGGCAGCGGTAACGGCAGCAGCAGCAGCAGTAGGCGGTG
GAGAAGGTGGGCGTCATCTGAAGCGCTGTGCGGCTGCAACAACGAGGAGA
GCAGGGCTAGGAAGAAGAGGCAACAGCAACAGCAACTGCAGCAGCAGCGC
CGGAGTAACAACAACAGGTGACGATGAATAACCCATTGGCGTTCCGGTTG
CGCCGCTTTCAGGCCCTGCCGGTGGGCTTGGGTAGGAGAGGCCGTCCTTG
CTGTAGAGCTTGTTGGTTCACCTAATCAAATACATTTCAGGCGAGGCTTG
CGCGGTGAGAGGTCTGGCGCGGGAGTGATGTTTTACGGCATCTATCAAGA
TACTCATGCTGCCGTCTTCTTGCGTAGTTTGTGCTCCAACTTGAGAGTAA
TTGGACGATGCTGGTCGCTATAGCGGCCAACCGCGGTGGATTACGAATAT
CCCAACAGGAATCGAGCACGACAGCAGCAGTCCGGCTGCGGCTGCCGTGG
TGTAGTTTCTAGGCTTCGAAAGAACCGCGGTCGGTGGTCTAGCGGTCGGC
GGTCTAGGCGACAGGATCACCGACGAAAAGGTGAAAACCTTCAGGCGTGC
CTCTGTACGCGTGAGTTGTGTTCCCGATAGGCCCTCGTCCGATACCTTTG
CGCTTAAACCTTTTGGCGCGCGTCGCACCAGTAGATGCACCAAACGGCAC
TCCACCCCGTCCTCCCACCCCCCTATCTACTAACCCTACCCCGACCTTCA
CCCCCAGCAGCCAAGCTGAAGAGCAGCAGCGACAGTCGCCGCTCACTCTG
TCGGTCGGCGTTGGCGTGAGCGGGGCACCCCGGGTCCTGCAGTCCCCGAG
AAGGTTCCTCTGCGGCAGCAGGAGTTCCGGTCACAGCAGCAACAGCAACA
GCGGCGTTGGTGGTGTTGGCGGCAGTGCGGCGGGCGGGTGGCGCGGGACC
ATGCGGGAGATGCGGGGCTTCCTGCTGTGGATGGCGGTGATCCTGGCGCA
CATGGTCCAGGTCCCCGTGCTTTGGTTCGTCTTCTGGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18223:1991..3330+

>mRNA_Ecto-sp13_S_contig18223.5645.1 ID=mRNA_Ecto-sp13_S_contig18223.5645.1|Name=mRNA_Ecto-sp13_S_contig18223.5645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18223:1991..3330+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAAGTCGGGCGACGAGGAGGAATCGCGGACGCTCACTCAGCAGCAGCA
GAAGCAGCAGCACCATGGTAGACGAATGAGCCGAACCCGACCGCTGCCTC
AGGCGATGAACCCTCACCACGAAGAGCTGCTCATGCCGGAAGAACAGCAG
TGGCGACAGCAGCACCACCGGCAGCGGACAAGGCAAGACGACGACGAGCA
AGGAGACAACGCCCCCCCCCCTGTCAAGGGCAGCAGTAGCGGCGGCGGCG
GCGGCGGCAGCAGCGGCGGCAGCAACAACAACAACCTAAGTAACGGAGGA
GGCAGCGGCAGCGGCAGCGGTAACGGCAGCAGCAGCAGCAGTAGGCGGTG
GAGAAGGTGGGCGTCATCTGAAGCGCTGTGCGGCTGCAACAACGAGGAGA
GCAGGGCTAGGAAGAAGAGGCAACAGCAACAGCAACTGCAGCAGCAGCGC
CGGAGTAACAACAACAGCCAAGCTGAAGAGCAGCAGCGACAGTCGCCGCT
CACTCTGTCGGTCGGCGTTGGCGTGAGCGGGGCACCCCGGGTCCTGCAGT
CCCCGAGAAGGTTCCTCTGCGGCAGCAGGAGTTCCGGTCACAGCAGCAAC
AGCAACAGCGGCGTTGGTGGTGTTGGCGGCAGTGCGGCGGGCGGGTGGCG
CGGGACCATGCGGGAGATGCGGGGCTTCCTGCTGTGGATGGCGGTGATCC
TGGCGCACATGGTCCAGGTCCCCGTGCTTTGGTTCGTCTTCTGGCAG
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