mRNA_Ecto-sp13_S_contig18221.5643.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18221.5643.1
Unique NamemRNA_Ecto-sp13_S_contig18221.5643.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18221.5643.1 vs. uniprot
Match: D7FYV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV4_ECTSI)

HSP 1 Score: 548 bits (1411), Expect = 7.810e-176
Identity = 311/382 (81.41%), Postives = 314/382 (82.20%), Query Frame = 2 
Query:    2 DAGAGAGHEWAGLNDDGSWRTEVARRAAGEAGAVEAERRRLAKVKADESWRSDAAGEGHGAPRRDSVSFTQLQTGNVRDKLNVFEGASGSKIGKEKAGNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQDSSGRSPPPPWSAGGRTRSPPSRAGDSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSYPEGGRETNTNHGGIYLGGSLDEPPMPSTPPPPLPASIATXXXLPARTSLVAASAK-PLPVRPTRGSGNNSST---SAGQHPAATKGNIWLAKAGLTRKNVAGSSSPAPTPTETPARESGSWRQGGGTPTHLAGVRAGGGMAAARAKGASGAWAKLHRRLEEESKNFTVKRRAEVVPPVVTS 1135
            DAGAGAGHEWAGLNDDGSWRTEVARRAAGEAGAVEAERRRLAKVKADESWRSDAAGEGHGAPRRDSVSFTQLQTGNVRDKLNVFEGASGSK+GKEK GNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQDSSGRS  PPWS              SDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMS PEGGRETNTNHGG  LGGSLDEPPMPSTPPPPLPASIATXXXLPAR SLV A+ K PLP RPTRGS         SAGQ PAA KGNIWLAKAGLTRK+VAGSS                       PTHLA       MAAARAKGASGAWAKLHRRLEEESKNF  KRRAEVVPPVVTS
Sbjct:  856 DAGAGAGHEWAGLNDDGSWRTEVARRAAGEAGAVEAERRRLAKVKADESWRSDAAGEGHGAPRRDSVSFTQLQTGNVRDKLNVFEGASGSKVGKEKPGNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQDSSGRSSSPPWSXXXXXXXXXXXXXXSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSCPEGGRETNTNHGGSCLGGSLDEPPMPSTPPPPLPASIATXXXLPARNSLVGANPKRPLPARPTRGSXXXXXXXXISAGQRPAAAKGNIWLAKAGLTRKHVAGSSXXXXXXXXXXXXXXXXXXXXXXXPTHLAXXXXXXXMAAARAKGASGAWAKLHRRLEEESKNFNGKRRAEVVPPVVTS 1237
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BLAST of mRNA_Ecto-sp13_S_contig18221.5643.1 vs. uniprot
Match: A0A6H5KWX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX8_9PHAE)

HSP 1 Score: 393 bits (1009), Expect = 6.300e-122
Identity = 236/378 (62.43%), Postives = 237/378 (62.70%), Query Frame = 2 
Query:    2 DAGAGAGHEWAGLNDDGSWRTEVARRAAGEAGAVEAERRRLAKVKADESWRSDAAGEGHGAPRRDSVSFTQLQTGNVRDKLNVFEGASGSKIGKEKAGNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQDSSGRSPPPPWSAGGRTRSPPSRAGDSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSYPEGGRETNTNHGGIYLGGSLDEPPMPSTPPPPLPASIATXXXLPARTSLVAASAKPLPVRPTRGSGNNSSTSAGQHPAATKGNIWLAKAGLTRKNVAGSSSPAPTPTETPARESGSWRQGGGTPTHLAGVRAGGGMAAARAKGASGAWAKLHRRLEEESKNFTVKRRAEVVPPVVTS 1135
            DAGAGAGH WAGLNDDGSWRTEVARRAAGEAGAVEAERRRLAKVKADESWRSDAAGEGHGAPRRDSVSFTQLQTGNVRDKLNVFEGASGSK+GKEK GNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQDSS                   RAGDSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMS PEG RE                                                                                                                 GGGTPTHLAG RA GGMAAARAKGASGAWAKLHRRLEEESKNF   RRAEVVPPVVTS
Sbjct:  478 DAGAGAGHVWAGLNDDGSWRTEVARRAAGEAGAVEAERRRLAKVKADESWRSDAAGEGHGAPRRDSVSFTQLQTGNVRDKLNVFEGASGSKVGKEKPGNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQDSSXXXXXXXXXXXXXXXXXXXRAGDSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSCPEGRRE-----------------------------------------------------------------------------------------------------------------GGGTPTHLAGGRADGGMAAARAKGASGAWAKLHRRLEEESKNFNGTRRAEVVPPVVTS 742
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18221.5643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYV4_ECTSI7.810e-17681.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWX8_9PHAE6.300e-12262.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18221contigEcto-sp13_S_contig18221:2..3504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2384
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-19_002610.1
Cds size564
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18221.5643.1prot_Ecto-sp13_S_contig18221.5643.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18221 1245..2441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.8622134-UTR-Ecto-sp13_S_contig18221:1..12441681462939.8622134-UTR-Ecto-sp13_S_contig18221:1..1244Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18221 2..1244 -
1681462939.9029183-UTR-Ecto-sp13_S_contig18221:2441..26661681462939.9029183-UTR-Ecto-sp13_S_contig18221:2441..2666Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18221 2442..2666 -
1681462939.9117742-UTR-Ecto-sp13_S_contig18221:2888..30061681462939.9117742-UTR-Ecto-sp13_S_contig18221:2888..3006Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18221 2889..3006 -
1681462939.9202826-UTR-Ecto-sp13_S_contig18221:3270..35041681462939.9202826-UTR-Ecto-sp13_S_contig18221:3270..3504Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18221 3271..3504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.8748076-CDS-Ecto-sp13_S_contig18221:1244..13201681462939.8748076-CDS-Ecto-sp13_S_contig18221:1244..1320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18221 1245..1320 -
1681462939.883554-CDS-Ecto-sp13_S_contig18221:1651..20941681462939.883554-CDS-Ecto-sp13_S_contig18221:1651..2094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18221 1652..2094 -
1681462939.8930132-CDS-Ecto-sp13_S_contig18221:2396..24411681462939.8930132-CDS-Ecto-sp13_S_contig18221:2396..2441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18221 2397..2441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18221.5643.1

>prot_Ecto-sp13_S_contig18221.5643.1 ID=prot_Ecto-sp13_S_contig18221.5643.1|Name=mRNA_Ecto-sp13_S_contig18221.5643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
MSKALLMSYPEGGRETNTNHGGIYLGGSLDEPPMPSTPPPPLPASIATPP
PLPARTSLVAASAKPLPVRPTRGSGNNSSTSAGQHPAATKGNIWLAKAGL
TRKNVAGSSSPAPTPTETPARESGSWRQGGGTPTHLAGVRAGGGMAAARA
KGASGAWAKLHRRLEEESKNFTVKRRAEVVPPVVTSE*
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mRNA from alignment at Ecto-sp13_S_contig18221:2..3504-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18221.5643.1 ID=mRNA_Ecto-sp13_S_contig18221.5643.1|Name=mRNA_Ecto-sp13_S_contig18221.5643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3503bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18221:2..3504- (Ectocarpus species13 EcNAP12_S_4_19m)
GGACGCGGGAGCCGGCGCCGGCCACGAGTGGGCCGGCCTTAACGACGACG
GTTCGTGGCGGACGGAGGTGGCAAGGCGGGCAGCGGGGGAGGCCGGGGCG
GTGGAGGCGGAGCGCCGCCGCTTGGCGAAGGTCAAGGCGGACGAGTCATG
GAGGTCGGATGCTGCCGGCGAGGGCCACGGCGCGCCTCGAAGGGACAGCG
TTAGCTTCACCCAGCTTCAAACTGGCAACGTCAGGTGGGCTTTGAAACAT
CGGTGGAACCAGAATCAAGCAGAGTCTGAACGCCTGACGAAAACGCGTGT
GTGTGCGGCATACATCCAGGTTTTTTGAAAAACATCGTCATGGTCTAATG
ATAGTCAATATCCTTCCCTCCGAAGCCGTCTAACGGCTAGGTTGGAGGTT
CGAATCCCGGCGAAGTGTATTCTTTTCATATACGATCGTACCTCGCACCT
CTTCTCTGCAATCCGCCGCTATCATCTGTTTCACATAACATTCTTCAGGG
ACAAGCTGAATGTGTTCGAAGGGGCTTCCGGTTCCAAGATCGGCAAGGAG
AAAGCTGGAAATCGGTCGAGTGTTGGTGCCCTTCACGGCAGGGGGCTGGT
CACCGCCTGGGCCAAGGTAAGTTGTCGCAAGCACTATTACACTGGAATCA
TGTCCAGTCAGTAGGCGCTTCCGCAGTTTTGGAGGCAGATTGGCTTCCAC
GCTTCTGGGCTCGTCGGCACAGACTAACTATGGTTGTCGAAGAGTGCTGC
GTCGTCTGATTTCCTTCAGATGGGAACGTGTACCTCTCAGCAAACTTTTT
CCCGTCCTCCCTTTACGTGCTCCCCATCGCTCCCCCAGAAAACCACGGAT
CACCACCCCGCCTCCACCGCGATCAATGAACAAGACAGCAGCGGGCGGTC
CCCGCCTCCTCCTTGGTCCGCCGGAGGCCGGACACGCTCGCCACCGTCCC
GCGCCGGCGACTCGGACGAGCAGGAGGAGTTCACGTGGAAGGCCGGACCG
TCACCTTGCCGGCTGAAGGGGAGGCCAAGCCTAGGCCTAATCCGCAACGG
GCAGGTCCGGATCATGTCCAAGGCGTTGCTGATGTCTTATCCGGAGGGCG
GGCGCGAGGTTAGTGGTTGCCACGGGCGGTATGCGGGTGGGGCGGGGTGT
TCGAGCCTGCCGTGCGGGTCTCGAAAACGGGCCTCGCTTTTTGTTTGAGT
GTAGCTGCGCTCGCTGGCTGAGCACGACGTGTGCATCGTGTTGAAGATCC
CGACATTTGTTGAGAGACAAGTCGCTGGTGGGCAATATCAGTTGCAATTT
TTCCCGCGTTGCCTACAGATGACAAACGTTCGTAGTAACCTCCCATCAAC
TGCCACCTTTTCCCGTCTCTCGCTTCCTCTCGTCCTGGCATGTCCGGCTC
TCCCGCATAGACCAACACCAATCACGGAGGTATTTACTTGGGCGGAAGCC
TTGACGAGCCGCCGATGCCATCAACCCCGCCACCGCCGCTGCCAGCCTCA
ATCGCCACACCGCCCCCGCTCCCCGCGCGCACGAGCTTGGTTGCTGCTAG
CGCCAAGCCCCTCCCGGTACGACCAACCCGTGGCAGCGGCAACAACAGCA
GCACCAGTGCCGGGCAACACCCGGCAGCGACCAAGGGAAACATCTGGTTG
GCGAAAGCCGGGTTGACTCGCAAGAATGTTGCAGGGTCGTCATCCCCCGC
ACCTACACCGACGGAGACGCCAGCTCGCGAAAGTGGTTCGTGGCGGCAGG
GGGGGGGGACGCCCACACACCTTGCTGGCGTTCGTGCGGGCGGCGGGATG
GCGGCAGCGAGGGCCAAGGGCGCGAGCGGGGCTTGGGCCAAGCTGCATCG
CAGGTGCGGTTGTAGCGGCCGGAGCGCTCCGCTTTGTAACCTGTGGCGCG
CAGTGAGTTTCGAGAGGGCAACGACTCTCGTTGGACGCCTGTCGTGCGAC
CCTATGCTTTCGACTCGTGGATGTTGTCCTTCGTTCACCCTCAGCACTAG
TGAGTGCCCTATACCCGACAGCCTTGGGGCTGGTTCTGGAAAGCCTGCTG
CTGTGTATAACTGTCACCCGTTTGTATTAAATAAAGTAGGTGGGTGAAAA
TTGTAACGATCGCGGGTTGCTCAGAGCCCTTTTCGCCAATGTGCTTGCCC
GTTTATTTGTGAACTCCCGGTCGGATCGCTGCAGGCTCGAAGAGGAAAGC
AAGAACTTTACCGTGAAAAGGCGTGCCGAGGTCGTGCCTCCCGTGGTCAC
CAGCGAGTGATAGATTCTGCTGGACGGCCTATCGGTACGGGTGCAATGTC
GGGTGTGGTGAGACGAATGCTGCTAGCAATTAGTAGCAAGCAGCCAGACC
TCGAGCAGTGCGGCACTCACAAGCCGAGCTAGAGAGGGGCTAACACATAC
GTCACCGGTGGCGGGAACAAGCTCCATGTTTTCGATAGCACGGGGGTGGA
GGTGGAGCTGAGGAATATCGTGTGTGGGGGGCGCCTACCCGTCAGGGTGC
GCAAGGGTTCACCCAACACTGCACTCGACGGAGCATCGTTCATGTTTTGT
AGTGTTCCTGACCGCGGCTGCTCATGAGTCTACTCTTGGGGGGGAAGTAC
TGGCGAGTTTTTGTCTTGGTCGGGGATGGTCGCAAGCATCTACACAAAAT
TGCACAAACTAGTGCATGTTGATACAAGGGTTTTTAACACCAGTTTGCCG
TAAGCGTGTCTGTTTAGAACGATCGTGCAAGTGAGCAAGACGGAAGTAAT
GTGGCCTTGTGCTCTTTTTGCTTGCTGCGTGGTTTTCGCGTGTGTGAATT
GTGACATATTATGGAGGAGATAGTCCCGAGGGATTGAAGAGGAATGGAAA
TACGACAATGCACTAGAGGTGATGTCGGGCAACGAGGAGCGGTACGCCGG
TCCTTGGTGCGGGGCGAAAATGCACTGTATACACATGTTTTTGCTTGGCT
GTTCTCGTCGTGATCAATATGAAGGGCGGGGTGTTGTTTCGATGTAATCG
TTTTTCATTGTCGCTGTCGCTATCGCTGTCGCTATCGCTGTCGCTGTCAA
ACTGTTTTTGTTGTCGTCGTCTTCGCTGTTGATGTGGTGTTCATGTTGAA
AGTAGCTGTGACTTCTTCCATCTCGTACGCCATCTTCCGTACTATTGTAG
TCCAGCTTGTGTAAGAACACGGCACTCTCTTCTCTCGACAACACAAGTTC
GCCCTGTGTGTTGTATTTGACTTGCAGGAAAAACCCTTCCCACCTCCAGG
GTGTGGCATGAGGTTAGCCTGGCCAGCAGATTTTATCCCGACAATGATCG
TCTTTCGGGCTCCGAAGGAATGGGAGCAAGGGTAGTTTGTTAGTACTGGC
TCGTTTCGCTGACTTACCCACCGCGTGGAGCAACGGCCTCTATTTTTTTT
GGGCGTTTCTTGGCCCTACAGCAGTAGATTGATTTTTGTTTTTCTGAACC
TGTTGGGAAGGCTGTCGTTGCAAGTGTGGCATTGGATGTTTTTGTGCGTT
TTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18221:2..3504-

>mRNA_Ecto-sp13_S_contig18221.5643.1 ID=mRNA_Ecto-sp13_S_contig18221.5643.1|Name=mRNA_Ecto-sp13_S_contig18221.5643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18221:2..3504- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAAGGCGTTGCTGATGTCTTATCCGGAGGGCGGGCGCGAGACCAA
CACCAATCACGGAGGTATTTACTTGGGCGGAAGCCTTGACGAGCCGCCGA
TGCCATCAACCCCGCCACCGCCGCTGCCAGCCTCAATCGCCACACCGCCC
CCGCTCCCCGCGCGCACGAGCTTGGTTGCTGCTAGCGCCAAGCCCCTCCC
GGTACGACCAACCCGTGGCAGCGGCAACAACAGCAGCACCAGTGCCGGGC
AACACCCGGCAGCGACCAAGGGAAACATCTGGTTGGCGAAAGCCGGGTTG
ACTCGCAAGAATGTTGCAGGGTCGTCATCCCCCGCACCTACACCGACGGA
GACGCCAGCTCGCGAAAGTGGTTCGTGGCGGCAGGGGGGGGGGACGCCCA
CACACCTTGCTGGCGTTCGTGCGGGCGGCGGGATGGCGGCAGCGAGGGCC
AAGGGCGCGAGCGGGGCTTGGGCCAAGCTGCATCGCAGGCTCGAAGAGGA
AAGCAAGAACTTTACCGTGAAAAGGCGTGCCGAGGTCGTGCCTCCCGTGG
TCACCAGCGAGTGA
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