mRNA_Ecto-sp13_S_contig18202.5637.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18202.5637.1
Unique NamemRNA_Ecto-sp13_S_contig18202.5637.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18202.5637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18202contigEcto-sp13_S_contig18202:1547..2672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1126
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_001070.1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.2957058-CDS-Ecto-sp13_S_contig18202:1546..18491681462939.2957058-CDS-Ecto-sp13_S_contig18202:1546..1849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18202 1547..1849 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.3058138-UTR-Ecto-sp13_S_contig18202:1849..26721681462939.3058138-UTR-Ecto-sp13_S_contig18202:1849..2672Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18202 1850..2672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18202.5637.1prot_Ecto-sp13_S_contig18202.5637.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18202 1547..1849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18202.5637.1

>prot_Ecto-sp13_S_contig18202.5637.1 ID=prot_Ecto-sp13_S_contig18202.5637.1|Name=mRNA_Ecto-sp13_S_contig18202.5637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MGAFFPNHSFAINHLVTVPSVKVGFPVVVGAIPSPEDFLYTCCQVSNKHS
DHGGARRYSQDVKNITKLVVQGQARCPPDGTWQKEATNKCRETEPSPDRR
*
back to top

mRNA from alignment at Ecto-sp13_S_contig18202:1547..2672+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18202.5637.1 ID=mRNA_Ecto-sp13_S_contig18202.5637.1|Name=mRNA_Ecto-sp13_S_contig18202.5637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18202:1547..2672+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGCATTTTTTCCAAACCATTCCTTTGCAATCAATCATTTAGTTAC
CGTTCCCTCGGTGAAAGTCGGCTTTCCTGTCGTGGTAGGTGCCATTCCCA
GCCCAGAAGATTTCCTCTACACGTGTTGCCAGGTCTCCAACAAGCACTCC
GACCATGGTGGTGCTCGCCGCTATTCACAAGACGTCAAGAACATAACAAA
ACTGGTTGTCCAAGGCCAGGCCCGCTGCCCTCCTGACGGAACGTGGCAGA
AAGAAGCCACCAATAAATGCCGAGAGACTGAACCCAGCCCCGACCGCAGG
TAGGCGACGTTAGACATGACACCCCCCGGACCAATTGCAAAGCTCGACTT
CTTCCACGACCAAGAGGAGGGCGTTGACAAACCACAACGATAGTAACAGC
AGTGGTACGTTTCCGGAAAGCTCCCGAAGAGAAGTGTGCAATCCAACGCC
GACAGTTTCGGGGCACCCCCGCTCTTCCTGGCGTACGCTTGAGAAGAGAA
AACCGATCTAGGGGGTACGATATCCCACGTCACCTAAGGTGGTAGTATTT
GTCTGGAGAACAAAAAAACGAACGAATGAACCCGGCCTTGCTTGGGCATC
ACATCGACGCTAAACTACGCATACCCTTGCTGTATACGACCGTGTCTACA
CCGACGGCCTCAAAGCGCGCGCTCCGCTAGCGAGGAGAGCGCCGCTCCCC
TGAGGGTTCGGCTGCCGAGAGCACGGGCGCTGCGCTAAACTGCACAACAA
TGCGGCCGACCTGGGATACAGCAGCTCACAAAGGCCGCAACTTTTTGCTA
TCGTTTGTACAGACGGGGCAGGGGTACACCAGGACAGAATTATCGTCCAC
CGGTCCCCCTCCGTCTTTGGCCGTACGCGTGCATCCTCTACAGTAAAAAA
AAATTAACACGCACAAGAACTAGACAGTCGGGGAAGTGAATCTACTCGTG
GTCATGCGCTGTGTTATCTGCGCATCACTTCTGCTGCGGGAGGTCCGTCA
CTATCAACTGCTGCCGTATGGATCCCTTGGAGCTAGCCAGCCCAACCCCC
TCTATCTAGCCTTCGGCCGCAGAATAGAGTGTCGGCTAGGGAGCACCGTC
ACCAGTGGCAGTAGCAGCAGCAGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18202:1547..2672+

>mRNA_Ecto-sp13_S_contig18202.5637.1 ID=mRNA_Ecto-sp13_S_contig18202.5637.1|Name=mRNA_Ecto-sp13_S_contig18202.5637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18202:1547..2672+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGCATTTTTTCCAAACCATTCCTTTGCAATCAATCATTTAGTTAC
CGTTCCCTCGGTGAAAGTCGGCTTTCCTGTCGTGGTAGGTGCCATTCCCA
GCCCAGAAGATTTCCTCTACACGTGTTGCCAGGTCTCCAACAAGCACTCC
GACCATGGTGGTGCTCGCCGCTATTCACAAGACGTCAAGAACATAACAAA
ACTGGTTGTCCAAGGCCAGGCCCGCTGCCCTCCTGACGGAACGTGGCAGA
AAGAAGCCACCAATAAATGCCGAGAGACTGAACCCAGCCCCGACCGCAGG
TAG
back to top