mRNA_Ecto-sp13_S_contig18201.5636.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18201.5636.1
Unique NamemRNA_Ecto-sp13_S_contig18201.5636.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18201.5636.1 vs. uniprot
Match: D8LH03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH03_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 6.320e-98
Identity = 287/379 (75.73%), Postives = 297/379 (78.36%), Query Frame = 1 
Query:    1 MEDTSEEVALASTASPSPIPPPPGRDPSATTPRQCFRMESLATLTAPLDAESTARAARTRSSRLPPNRTYAN----RLGYGDI-EEEKLPIPDKRQLESWARYGFVDTELLLQAAGQHQGGRKAAALSEGLTIVEEEQGRDASRSLVRIGAAAEEAGDGLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEGGADGDVSLAVSSSTPLTETMTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQEANQGSRAGNSRRAAQTKAEIERHKRNRAERLRAYGCQR 1122
            MEDTSEEVALASTASPSPIPPPPGRDPS  TPRQCFRMESLATLTAPLDAESTARAARTRSSRLPPNRTYA+    R+G+GDI EEEKLPIPDKRQLESWARYGFVDTELLLQAA Q QGGRKAAALSEGL IVEEEQG D SRSLVR+GAAAEEAGDGL+           XXXXXXXXXXXXXXXXXXXXXXXXX         PEGGA+GD+SLA+ SSTPLT+TMTPS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                               QEANQGSRAG+SRRAAQTKAEIERHKRNRAERLRAYGCQR
Sbjct:    1 MEDTSEEVALASTASPSPIPPPPGRDPSPNTPRQCFRMESLATLTAPLDAESTARAARTRSSRLPPNRTYASTSAIRVGHGDIIEEEKLPIPDKRQLESWARYGFVDTELLLQAAVQPQGGRKAAALSEGLAIVEEEQGGDVSRSLVRMGAAAEEAGDGLQEVLGERKENDHXXXXXXXXXXXXXXXXXXXXXXXXX---------PEGGAEGDISLAIGSSTPLTDTMTPSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------QEANQGSRAGSSRRAAQTKAEIERHKRNRAERLRAYGCQR 323
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18201.5636.1 vs. uniprot
Match: A0A6H5KJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ42_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.710e-63
Identity = 256/380 (67.37%), Postives = 262/380 (68.95%), Query Frame = 1 
Query:    1 MEDTSEEVALASTASPSPIPPPPGRDPSATTPRQCFRMESLATLTAPLDAESTARAARTRSSRLPPNRTYA----NRLGYGDIEEEKLPIPDKRQLESWARYGFVDTELLLQAAGQHQGGRKAAALSEGLTIVEEEQGRDASRSLVRIGAAAEEAGDGLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PEGGADGDVSLAVSSSTPLTETMTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQEANQGSRAGNSRRAAQTKAEIERHKRNRAERLRAYGCQR 1122
            MED SEEVALASTASPSP+PPPPGRDPSATTPRQCFR ESLATLTAPLDAESTARAARTR SRLPPNR YA    N LG+GD EEEKLPIPDKRQLESWARYGFVD ELLL AA Q QGGR                     RS                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              PEGGA+ D+SLAV SSTPLT+TMTPS    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               XXXXXXXXXXXXXXXXXXXX                    XXX           AQQEANQGSRAG+SRRAAQTKAEIERHKRNRAERLRAYGCQR
Sbjct:    1 MEDLSEEVALASTASPSPMPPPPGRDPSATTPRQCFRAESLATLTAPLDAESTARAARTRCSRLPPNRAYASTTVNSLGHGDNEEEKLPIPDKRQLESWARYGFVDAELLLLAADQPQGGRXXXXXXXXXXXXXXXXXXXXGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHESTPATADGERRRPEGGAERDISLAVGSSTPLTDTMTPSSQERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTPAGGLDSMAASLXXXXXXXXXXXXXXXXXXXXTKEVELAELTQQEEREADVAXXXTV---------AQQEANQGSRAGSSRRAAQTKAEIERHKRNRAERLRAYGCQR 371
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18201.5636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH03_ECTSI6.320e-9875.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ42_9PHAE1.710e-6367.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18201contigEcto-sp13_S_contig18201:1798..2922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1125
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-14_001250.1
Cds size1125
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.2687106-CDS-Ecto-sp13_S_contig18201:1797..29221681462939.2687106-CDS-Ecto-sp13_S_contig18201:1797..2922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18201 1798..2922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18201.5636.1prot_Ecto-sp13_S_contig18201.5636.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18201 1798..2922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18201.5636.1

>prot_Ecto-sp13_S_contig18201.5636.1 ID=prot_Ecto-sp13_S_contig18201.5636.1|Name=mRNA_Ecto-sp13_S_contig18201.5636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=375bp
MEDTSEEVALASTASPSPIPPPPGRDPSATTPRQCFRMESLATLTAPLDA
ESTARAARTRSSRLPPNRTYANRLGYGDIEEEKLPIPDKRQLESWARYGF
VDTELLLQAAGQHQGGRKAAALSEGLTIVEEEQGRDASRSLVRIGAAAEE
AGDGLRRQNEQQEEEQEVVGERENHHHPPASRSPTTIHESTPATAEDERR
RPEGGADGDVSLAVSSSTPLTETMTPSSQERRRDNTTASADAAAGIATAV
SNEGSSSQTTAKTTRTPAGGLDSMAASLLASSAAAAAASSAASQEAARGK
EDDEEEETKEDELAELKQQEEREAAVAAAATVAQQEANQGSRAGNSRRAA
QTKAEIERHKRNRAERLRAYGCQR*
back to top

mRNA from alignment at Ecto-sp13_S_contig18201:1798..2922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18201.5636.1 ID=mRNA_Ecto-sp13_S_contig18201.5636.1|Name=mRNA_Ecto-sp13_S_contig18201.5636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1125bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18201:1798..2922+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGACACGTCCGAAGAGGTGGCGCTGGCGTCGACGGCGAGCCCGTC
ACCCATCCCCCCCCCTCCCGGGAGAGATCCCTCTGCAACCACCCCGAGAC
AATGCTTTCGCATGGAATCCCTCGCCACCCTCACGGCGCCTCTTGATGCC
GAGAGCACAGCCCGAGCCGCACGAACGAGGTCCAGCCGCCTTCCCCCCAA
CCGGACCTACGCCAATAGATTGGGGTATGGAGACATAGAGGAGGAGAAGT
TGCCGATTCCAGACAAAAGGCAGTTGGAGAGCTGGGCGAGGTATGGCTTC
GTAGACACGGAACTACTCTTGCAGGCAGCAGGCCAACATCAGGGCGGGCG
GAAGGCAGCCGCCTTGTCGGAAGGCCTGACGATCGTGGAGGAGGAGCAAG
GCAGGGACGCGAGTCGGTCGTTAGTTAGAATCGGGGCGGCAGCAGAAGAG
GCCGGCGATGGCTTGCGGCGGCAAAACGAGCAGCAGGAGGAGGAGCAGGA
GGTTGTTGGTGAGAGGGAGAATCATCATCATCCTCCCGCATCCCGGTCGC
CGACAACGATACACGAAAGTACGCCCGCCACCGCCGAGGACGAGAGAAGA
AGGCCAGAAGGAGGAGCGGATGGAGATGTCTCCCTGGCTGTCAGCTCCAG
CACGCCCCTGACGGAGACGATGACGCCGTCGTCTCAGGAGCGTCGCCGAG
ATAACACCACCGCTTCAGCAGATGCAGCAGCCGGGATTGCCACTGCTGTC
AGTAATGAAGGTAGCAGTAGTCAGACCACAGCCAAGACCACCAGGACACC
AGCGGGTGGTCTCGACTCGATGGCGGCCTCCCTACTGGCGTCCTCTGCAG
CAGCAGCAGCAGCAAGCTCCGCGGCGTCACAGGAAGCAGCACGGGGAAAG
GAGGACGACGAGGAGGAGGAAACGAAAGAAGACGAGCTGGCGGAGCTCAA
GCAGCAGGAGGAGCGGGAAGCCGCCGTCGCCGCTGCCGCGACGGTGGCTC
AACAAGAAGCAAATCAGGGCAGCAGGGCCGGCAACAGCAGGCGAGCGGCC
CAAACAAAGGCTGAGATAGAGAGGCACAAGCGCAATCGTGCGGAACGTCT
TCGCGCCTACGGATGTCAGAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18201:1798..2922+

>mRNA_Ecto-sp13_S_contig18201.5636.1 ID=mRNA_Ecto-sp13_S_contig18201.5636.1|Name=mRNA_Ecto-sp13_S_contig18201.5636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1125bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18201:1798..2922+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGACACGTCCGAAGAGGTGGCGCTGGCGTCGACGGCGAGCCCGTC
ACCCATCCCCCCCCCTCCCGGGAGAGATCCCTCTGCAACCACCCCGAGAC
AATGCTTTCGCATGGAATCCCTCGCCACCCTCACGGCGCCTCTTGATGCC
GAGAGCACAGCCCGAGCCGCACGAACGAGGTCCAGCCGCCTTCCCCCCAA
CCGGACCTACGCCAATAGATTGGGGTATGGAGACATAGAGGAGGAGAAGT
TGCCGATTCCAGACAAAAGGCAGTTGGAGAGCTGGGCGAGGTATGGCTTC
GTAGACACGGAACTACTCTTGCAGGCAGCAGGCCAACATCAGGGCGGGCG
GAAGGCAGCCGCCTTGTCGGAAGGCCTGACGATCGTGGAGGAGGAGCAAG
GCAGGGACGCGAGTCGGTCGTTAGTTAGAATCGGGGCGGCAGCAGAAGAG
GCCGGCGATGGCTTGCGGCGGCAAAACGAGCAGCAGGAGGAGGAGCAGGA
GGTTGTTGGTGAGAGGGAGAATCATCATCATCCTCCCGCATCCCGGTCGC
CGACAACGATACACGAAAGTACGCCCGCCACCGCCGAGGACGAGAGAAGA
AGGCCAGAAGGAGGAGCGGATGGAGATGTCTCCCTGGCTGTCAGCTCCAG
CACGCCCCTGACGGAGACGATGACGCCGTCGTCTCAGGAGCGTCGCCGAG
ATAACACCACCGCTTCAGCAGATGCAGCAGCCGGGATTGCCACTGCTGTC
AGTAATGAAGGTAGCAGTAGTCAGACCACAGCCAAGACCACCAGGACACC
AGCGGGTGGTCTCGACTCGATGGCGGCCTCCCTACTGGCGTCCTCTGCAG
CAGCAGCAGCAGCAAGCTCCGCGGCGTCACAGGAAGCAGCACGGGGAAAG
GAGGACGACGAGGAGGAGGAAACGAAAGAAGACGAGCTGGCGGAGCTCAA
GCAGCAGGAGGAGCGGGAAGCCGCCGTCGCCGCTGCCGCGACGGTGGCTC
AACAAGAAGCAAATCAGGGCAGCAGGGCCGGCAACAGCAGGCGAGCGGCC
CAAACAAAGGCTGAGATAGAGAGGCACAAGCGCAATCGTGCGGAACGTCT
TCGCGCCTACGGATGTCAGAGGTGA
back to top