mRNA_Ecto-sp13_S_contig1820.5635.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Match: A0A6H5JH07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH07_9PHAE) HSP 1 Score: 317 bits (811), Expect = 1.910e-99 Identity = 161/218 (73.85%), Postives = 175/218 (80.28%), Query Frame = 2
Query: 5 TPAALDRARGRTRKH*KSRPTDLMQTYRDAYDKLQKAERMNSLGSVVEDSKTMLDEAHVVHTTRVLCTVKHFVHLELQDRVAKVEHSSEAGRLADVDPKTVRRWVKEFCKGDSFVVCNRQYNKREAHSYIDDEDIRQRLREYIDRRLYRRKKNEPCLRIADVQKWISEDLLKEELAGSRGVSRRTVHKWTWTLGFLWSRHHKCVYVDGNNRLDVCMPR 658
TPAAL RARGRT KH R +LM+TYR+A+DKLQKAE MN+ GSVVEDSKT LDEAHVVHTTRV+ VKHF+ LE E G +++VDP TVRRWVKEFC G SFVV RQYNKREAHSYIDDED+R RLREYIDRRLYRRKK+EP LRIADVQKWI EDLLKEELAG+RGVSRRTVHKW LGF WSRHHKCVYVDG+NR DV R
Sbjct: 291 TPAALARARGRTLKHWSRRKAELMETYRNAHDKLQKAEEMNNYGSVVEDSKTQLDEAHVVHTTRVVRAVKHFLQLE------------EVGEVSEVDPTTVRRWVKEFCNGGSFVVRKRQYNKREAHSYIDDEDVRYRLREYIDRRLYRRKKDEPRLRIADVQKWIHEDLLKEELAGTRGVSRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDR 496
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Match: D7FZS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS4_ECTSI) HSP 1 Score: 296 bits (757), Expect = 1.080e-98 Identity = 151/226 (66.81%), Postives = 171/226 (75.66%), Query Frame = 2
Query: 32 GRTRKH*KSRPTDLMQTYRDAYDKLQKAERMNSLGSVVEDSKTMLDEAHVVHTTRVLCTVKHFVHLELQDRVAKVEHSSEAGRLADVDPKTVRRWVKEFCKGDSFVVCNRQYNKREAHSYIDDEDIRQRLREYIDRRLYRRKKNEPCLRIADVQKWISEDLLKEELAGSRGVSRRTVHKWTWTLGFLWSRHHKCVYVDGNNRLDVCMPRWQPCPRGRNGDGGNQTR 709
G KH R DLM+TYR+A QK E MN+ GSVVED K MLDE H+V TTRV+ VKHF+ LE+QD VAK+EHS E ++ +VDP TVRRWVK+ CKG S V+ RQYNKREAH YIDDEDIR LREYIDRRLYRRK++EP LRIADVQKWI++DLLKEELAG+RG SRRTVHKW L F WSRH K V VDG+NR DV PR PRGRNGDG NQ +
Sbjct: 11 GPNEKHWSRRKADLMETYRNALGTPQKVEEMNNNGSVVEDPKIMLDERHMVQTTRVVRAVKHFLQLEVQDGVAKMEHSREVAKVYEVDPSTVRRWVKKLCKGGSVVIRKRQYNKREAHPYIDDEDIRNGLREYIDRRLYRRKRDEPRLRIADVQKWINDDLLKEELAGTRGFSRRTVHKWMQKLDFRWSRHRKWVDVDGHNRPDVVTPR----PRGRNGDGNNQPQ 232
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE) HSP 1 Score: 284 bits (727), Expect = 1.650e-86 Identity = 138/179 (77.09%), Postives = 150/179 (83.80%), Query Frame = 2
Query: 122 MNSLGSVVEDSKTMLDEAHVVHTTRVLCTVKHFVHLELQDRVAKVEHSSEAGRLADVDPKTVRRWVKEFCKGDSFVVCNRQYNKREAHSYIDDEDIRQRLREYIDRRLYRRKKNEPCLRIADVQKWISEDLLKEELAGSRGVSRRTVHKWTWTLGFLWSRHHKCVYVDGNNRLDVCMPR 658
MN+ GSVVEDSKT L+EAHVVHTTRV VKHF+ LE++D V K+ HS E G +++VDP TVRRWVKEFC G SFVV RQYNKREAHSYIDDED+R RLREYIDRRLYRRKKNEP LRIADVQKWI EDLLKEELAG+RGVS RTVHKW LGF WSRHHKCVYVDG+NR DV R
Sbjct: 1 MNNYGSVVEDSKTQLNEAHVVHTTRVARAVKHFLQLEIRDGVTKMAHSREVGEVSEVDPTTVRRWVKEFCNGGSFVVRKRQYNKREAHSYIDDEDVRYRLREYIDRRLYRRKKNEPRLRIADVQKWIHEDLLKEELAGTRGVSWRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDR 179
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Match: A0A6H5KM05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM05_9PHAE) HSP 1 Score: 244 bits (622), Expect = 1.490e-75 Identity = 126/219 (57.53%), Postives = 146/219 (66.67%), Query Frame = 2
Query: 2 WTPAALDRARGRTRKH*KSRPTDLMQTYRDAYDKLQKAERMNSLGSVVEDSKTMLDEAHVVHTTRVLCTVKHFVHLELQDRVAKVEHSSEAGRLADVDPKTVRRWVKEFCKGDSFVVCNRQYNKREAHSYIDDEDIRQRLREYIDRRLYRRKKNEPCLRIADVQKWISEDLLKEELAGSRGVSRRTVHKWTWTLGFLWSRHHKCVYVDGNNRLDVCMPR 658
WT LDRARGR RKH R +LMQTYRDAYDKLQK + +Q+ VAK++HS A +A V+ K VRRWVKEFCKG +FVV RQYNKRE HS+I+DED R LR YIDR+LYRRKK+EP LRIADVQKWI+E+LLK+ELAG++GVSRRTVHKW LGF WSRHHKCVYVDG+NR D+ R
Sbjct: 241 WTKTQLDRARGRARKHWTRRKAELMQTYRDAYDKLQK--------------------------------------VRIQEGVAKMDHSRAAAEVAKVESKAVRRWVKEFCKGGAFVVPKRQYNKREPHSFIEDEDKRNHLRGYIDRKLYRRKKDEPRLRIADVQKWINEELLKDELAGTKGVSRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDIVNDR 421
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE) HSP 1 Score: 234 bits (596), Expect = 7.230e-68 Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = 2
Query: 254 VEHSSEAGRLADVDPKTVRRWVKEFCKGDSFVVCNRQYNKREAHSYIDDEDIRQRLREYIDRRLYRRKKNEPCLRIADVQKWISEDLLKEELAGSRGVSRRTVHKWTWTLGFLWSRHHKCVYVDGNNRLDVCMPR 658
+EHS EAG++ADVD +TVRRWVKEFCKGDSFVV RQYNKRE HSYIDDEDIR RLREYIDRRLYRRKK+EP LRIADVQKWI+EDLLKEELAG+RG+SRRTVHKW LGF WSRHHKCVYVDG+NR DV R
Sbjct: 1 MEHSREAGKVADVDSRTVRRWVKEFCKGDSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDR 135
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE) HSP 1 Score: 203 bits (516), Expect = 2.410e-56 Identity = 102/219 (46.58%), Postives = 134/219 (61.19%), Query Frame = 2
Query: 2 WTPAALDRARGRTRKH*KSRPTDLMQTYRDAYDKLQKAERMNSLGSVVEDSKTMLDEAHVVHTTRVLCTVKHFVHLELQDRVAKVEHSSEAGRLADVDPKTVRRWVKEFCKGDSFVVCNRQYNKREAHSYIDDEDIRQRLREYIDRRLYRRKKNEPCLRIADVQKWISEDLLKEELAGSRGVSRRTVHKWTWTLGFLWSRHHKCVYVDGNNRLDVCMPR 658
WT L R RTRKH R +L++ +R A DK+ +A N S+VE TML V RV+ V+ ++ +E+ + V K+ HS G V +TVR+WV +FCK FVV +R+Y KR+ YIDDEDIR++ REY+D R+YRRKK +P R+AD Q+W++ LKEE AG G+ R T H W LGF W RH KCVYVDG+NR DV R
Sbjct: 395 WTKQQLARQARRTRKHCSERKEELVRIFRQALDKIDQAG--NDYTSLVEKPDTMLARVRAVRVCRVIGAVRTYLTMEINEGVKKLAHSRAVGEAVGVHARTVRKWVTDFCKDGKFVVPHREYVKRQPFCYIDDEDIREQCREYVDERIYRRKKGQPRFRVADFQRWVNTVCLKEEFAGGGGICRSTAHVWIAQLGFRWRRHGKCVYVDGHNRPDVVQAR 611
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Match: A0A6H5KDG4_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG4_9PHAE) HSP 1 Score: 177 bits (450), Expect = 2.110e-47 Identity = 90/201 (44.78%), Postives = 121/201 (60.20%), Query Frame = 2
Query: 2 WTPAALDRARGRTRKH*KSRPTDLMQTYRDAYDKLQKAERMNSLGSVVEDSKTMLDEAHVVHTTRVLCTVKHFVHLELQDRVAKVEHSSEAGRLADVDPKTVRRWVKEFCKGDSFVVCNRQYNKREAHSYIDDEDIRQRLREYIDRRLYRRKKNEPCLRIADVQKWISEDLLKEELAGSRGVSRRTVHKWTWTLGFLWSRH 604
WT L R RTRKH R +L++ +R A DK+ +A N S+VE TML V RV+ V+ ++ +E+ + V K+ HS G V +TVR+WV +FCK FVV +R+Y KR+ YIDDEDIR++ REY+D R+YRRKK +P R+AD Q+W++ LKEE AG G+ R T H W LGF W RH
Sbjct: 390 WTKQQLARQARRTRKHCSERKEELVRIFRQALDKIDQAG--NDYTSLVEKPDTMLARVRAVRVCRVIGAVRTYLTMEINEGVKKLAHSRAVGEAVGVHARTVRKWVTDFCKDGKFVVPHREYVKRQPFCYIDDEDIREQCREYVDERIYRRKKGQPRFRVADFQRWVNTVCLKEEFAGGGGICRSTAHVWIAQLGFRWRRH 588
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Match: A0A6H5JM40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM40_9PHAE) HSP 1 Score: 176 bits (447), Expect = 2.720e-47 Identity = 90/143 (62.94%), Postives = 104/143 (72.73%), Query Frame = 2
Query: 2 WTPAALDRARGRTRKH*KSRPTDLMQTYRDAYDKLQKAERMNSLGSVVEDSKTMLDEAHVVHTTRVLCTVKHFVHLELQDRVAKVEHSSEAGRLADVDPKTVRRWVKEFCKGDSFVVCNRQYNKREAHSYIDDEDIRQRLREY 430
WT LDRARGR RKH R +LMQTYRDAYDKLQKAE S SVV D KTMLD + +VHTT+V+ VKHFVHLE+Q+ VAK +HS A +A V KTVRRWVKEF +G +FVV RQYNKRE HS+I+DED R R +
Sbjct: 289 WTKTQLDRARGRARKHWTRRKAELMQTYRDAYDKLQKAEHSRSYDSVVADPKTMLDRSQLVHTTKVIHAVKHFVHLEIQEGVAKKDHSRAAVEVAKVQSKTVRRWVKEFREGGAFVVPKRQYNKREPHSFIEDEDKRNHSRHH 431
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Match: A0A6H5L7Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z5_9PHAE) HSP 1 Score: 160 bits (406), Expect = 3.320e-46 Identity = 75/162 (46.30%), Postives = 103/162 (63.58%), Query Frame = 2
Query: 161 MLDEAHVVHTTRVLCTVKHFVHLELQDRVAKVEHSSEAGRLADVDPKTVRRWVKEFCKGDSFVVCNRQYNKREAHSYIDDEDIRQRLREYIDRRLYRRKKNEPCLRIADVQKWISEDLLKEELAGSRGVSRRTVHKWTWTLGFLWSRHHKCVYVDGNNRLDV 646
ML E+ + R ++ + LE+++ V K+ HS G + +TVR+WVKEFC+ F++ R Y R+A S+ID EDI +R RE IDRRLYRRKK +P R++D Q+W++ LLKE +G G+SR T H W LGF W + KCVYVDG+NR DV
Sbjct: 1 MLTESRLPSIMRTALAIRAYAVLEIEEGVNKMRHSRYVGDVVKTTAQTVRKWVKEFCQDGKFLISKRLYEIRQADSFIDPEDIAERCREEIDRRLYRRKKTDPWFRVSDFQRWVNTVLLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDV 162
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE) HSP 1 Score: 174 bits (440), Expect = 4.570e-46 Identity = 95/219 (43.38%), Postives = 124/219 (56.62%), Query Frame = 2
Query: 2 WTPAALDRARGRTRKH*KSRPTDLMQTYRDAYDKLQKAERMNSLGSVVEDSKTMLDEAHVVHTTRVLCTVKHFVHLELQDRVAKVEHSSEAGRLADVDPKTVRRWVKEFCKGDSFVVCNRQYNKREAHSYIDDEDIRQRLREYIDRRLYRRKKNEPCLRIADVQKWISEDLLKEELAGSRGVSRRTVHKWTWTLGFLWSRHHKCVYVDGNNRLDVCMPR 658
WT + ++ R L+ T+ + DK+ K N L S+VE+ + ML + RV+ V+ + LE++ V K+ HS G A V KTVRRWV EFCK FVV +R Y KR+ +YIDDEDIR + REYID R+YRRK R+AD +W++E L+EE G+SR T H W LGF W RH KCVYVDG+NR DV R
Sbjct: 357 WTKERREXXXXXXXRNCTERQKKLIDTFCEGRDKIDKVG--NDLASLVENEERMLTPERIACVCRVISVVRAYFDLEIRYGVQKMVHSRAVGEGAGVHAKTVRRWVTEFCKDGKFVVPDRAYVKRQPFTYIDDEDIRDQCREYIDERIYRRKGTR--FRVADFHRWVNEVCLEEEFKDGGGISRSTAHHWISQLGFRWRRHGKCVYVDGHNRPDVVEAR 571 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1820.5635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1820.5635.1 >prot_Ecto-sp13_S_contig1820.5635.1 ID=prot_Ecto-sp13_S_contig1820.5635.1|Name=mRNA_Ecto-sp13_S_contig1820.5635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp MQTYRDAYDKLQKAERMNSLGSVVEDSKTMLDEAHVVHTTRVLCTVKHFVback to top mRNA from alignment at Ecto-sp13_S_contig1820:5411..7934- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1820.5635.1 ID=mRNA_Ecto-sp13_S_contig1820.5635.1|Name=mRNA_Ecto-sp13_S_contig1820.5635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2524bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1820:5411..7934- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1820:5411..7934- >mRNA_Ecto-sp13_S_contig1820.5635.1 ID=mRNA_Ecto-sp13_S_contig1820.5635.1|Name=mRNA_Ecto-sp13_S_contig1820.5635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1820:5411..7934- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |