mRNA_Ecto-sp13_S_contig18196.5631.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18196.5631.1
Unique NamemRNA_Ecto-sp13_S_contig18196.5631.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18196.5631.1 vs. uniprot
Match: D7FT10_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT10_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.050e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 VALSAYDVKVQHLRGSLEVVPKRLHKGVVVSTILRTQKE 117
            VALSAYDVKVQHLRGSLEVVPKRLHKGVVVSTILRTQKE
Sbjct:  846 VALSAYDVKVQHLRGSLEVVPKRLHKGVVVSTILRTQKE 884
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18196.5631.1 vs. uniprot
Match: A0A835Z7K4_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.210e-8
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 VALSAYDVKVQHLRGSLEVVPKRLHKGVVVSTILRTQKE 117
            VAL+A+D KVQH+RG +EVVP RLHKGVV  TILR   E
Sbjct:  846 VALAAHDTKVQHVRGQIEVVPMRLHKGVVAKTILRQTVE 884
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18196.5631.1 vs. uniprot
Match: A0A7R9YA22_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA22_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 VALSAYDVKVQHLRGSLEVVPKRLHKGVVVSTILRTQK 114
            +ALS+YDVKV H RG +EVVP+RL+KG+V S  L   K
Sbjct:  927 IALSSYDVKVHHNRGMIEVVPRRLNKGLVASLALSKAK 964
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18196.5631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT10_ECTSI1.050e-15100.00Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A835Z7K4_9STRA2.210e-869.23Trehalose 6-phosphate phosphatase n=1 Tax=Tribonem... [more]
A0A7R9YA22_9STRA1.160e-560.53Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18196contigEcto-sp13_S_contig18196:2861..3361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.9290884-CDS-Ecto-sp13_S_contig18196:2860..29141681462938.9290884-CDS-Ecto-sp13_S_contig18196:2860..2914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18196 2861..2914 +
1681462938.938582-CDS-Ecto-sp13_S_contig18196:3298..33611681462938.938582-CDS-Ecto-sp13_S_contig18196:3298..3361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18196 3299..3361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18196.5631.1prot_Ecto-sp13_S_contig18196.5631.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18196 2861..3361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18196.5631.1

>prot_Ecto-sp13_S_contig18196.5631.1 ID=prot_Ecto-sp13_S_contig18196.5631.1|Name=mRNA_Ecto-sp13_S_contig18196.5631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
VALSAYDVKVQHLRGSLEVVPKRLHKGVVVSTILRTQKE
back to top

mRNA from alignment at Ecto-sp13_S_contig18196:2861..3361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18196.5631.1 ID=mRNA_Ecto-sp13_S_contig18196.5631.1|Name=mRNA_Ecto-sp13_S_contig18196.5631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18196:2861..3361+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGCTGTCGGCCTACGATGTCAAGGTCCAGCACCTTAGGGGCTCGCT
CGAGGTGAGAGTCGAAAAGTGTCCAACTTTGCCTATTTTCCTGTCAACAG
CCCCCGTCTCTTGGTCTGGACACAACGAGGACACTTGAACGGCTGGACAA
ACCTAATGGCCGATTACTACGCCCCGAGATGCCGCGACTGCATCATAATT
AGGGTCTGATGCATTTTTGGCTTTCAAATGATGCCACCCTGCCAACAAAA
ACCTCCCTTCCCATGCCCACGCGTAGTCTATCGACATCCACAGAGTCGGT
TCATTCATAGTTTCTGCCGGATCTTTCCGCTATCAAGCTCGCCCCCCAGT
ACTGTCAAACAATGCACCGTCTGCACTTCGAAGCAGCCTTGAGCACCATA
CCACAAATTCGGCTCATTTATCCCGTCTTTTTGTACAGGTGGTGCCGAAG
CGTCTGCACAAGGGCGTGGTCGTGAGCACCATCCTCAGGACGCAGAAGGA
G
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18196:2861..3361+

>mRNA_Ecto-sp13_S_contig18196.5631.1 ID=mRNA_Ecto-sp13_S_contig18196.5631.1|Name=mRNA_Ecto-sp13_S_contig18196.5631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18196:2861..3361+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGCTGTCGGCCTACGATGTCAAGGTCCAGCACCTTAGGGGCTCGCT
CGAGGTGGTGCCGAAGCGTCTGCACAAGGGCGTGGTCGTGAGCACCATCC
TCAGGACGCAGAAGGAG
back to top