mRNA_Ecto-sp13_S_contig18196.5630.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18196.5630.1
Unique NamemRNA_Ecto-sp13_S_contig18196.5630.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Match: D7FT10_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT10_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.460e-54
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 1
Query:    1 VQAVGGVPDLGLAANNGLAFSWPVEAASERSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE 285
            + AVG VP LGLAANNGLAFSWPVE ASERSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE
Sbjct:  751 MNAVGAVPGLGLAANNGLAFSWPVEVASERSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE 845          
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Match: A0A7R9YA22_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA22_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.360e-28
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   22 PDLGLAANNGLAFSWP---------------VEAASERSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE 285
            P++GL A+NG +FSWP               +    +R WEVFDYGVDWD V+  ALP+++++T HTNG+N+ +R +G+ WSYYSTDPEWG  QAK++  ELE
Sbjct:  824 PEIGLGASNGHSFSWPERLKVSSSDEFSEFKIAYGEQRQWEVFDYGVDWDAVQAVALPIMERYTWHTNGSNLSLRSAGIEWSYYSTDPEWGTFQAKKMAVELE 926          
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Match: A0A7S1ZUA6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUA6_TRICV)

HSP 1 Score: 109 bits (272), Expect = 9.250e-26
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    4 QAVGGVPDLGLAANNGLAFSWPVEAA-SERSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE 285
             A+G VP LGLA +NG  F+ P+  + +ER+W  FD GVDWD VK AALP+L K+TA TNG+ +K+  S + WSYY  DPEWG  QA  L  ELE
Sbjct:  647 DALGHVPGLGLAHSNGACFASPLRISETERTWHAFDLGVDWDAVKRAALPILSKYTARTNGSFVKLTHSSIGWSYYCCDPEWGSLQASYLVPELE 741          
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Match: A0A7R9ZQC4_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQC4_9STRA)

HSP 1 Score: 107 bits (266), Expect = 9.850e-26
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    1 VQAVGGVPDLGLAANNGLAFSWP-VEAASERSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE 285
            + A+G +P+LGLA +NG  FS P VE  +ER W+ FD GVDW+ VK  A P+L K+TA +NG+ +K+    + WSYYS DPEWG  QA  L  ELE
Sbjct:   85 INALGHIPNLGLAVSNGAKFSAPMVEGETERRWQTFDLGVDWEAVKAVAHPVLSKYTARSNGSFVKLTKFSIGWSYYSCDPEWGSLQASHLVLELE 180          
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Match: A0A835Z7K4_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K4_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.270e-25
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 1
Query:  100 VFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE 285
            VFDYGVDW+EVK+ ALPLL KFTAHTNG++IK+RD+GLAWSYYSTDPEWG  QAKQL  ELE
Sbjct:  784 VFDYGVDWEEVKSIALPLLNKFTAHTNGSSIKIRDTGLAWSYYSTDPEWGGMQAKQLALELE 845          
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Match: A0A7S2Y1J0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1J0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.470e-24
Identity = 51/114 (44.74%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   22 PDLGLAANNGLAFSWP------------------VEAASE-------RSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSG-LAWSYYSTDPEWGQTQAKQLHGELE 285
            P++GLAA+NG+ ++WP                  VE   E       R W  FDYG+DWDEVK  ALP+L + TAHTNG+ ++++++G ++WS+++ DPEWGQ  AKQL GELE
Sbjct:  426 PEVGLAASNGMTYTWPGDSPESASGEQQTLRSSMVEGGGESTQIAEGRVWTKFDYGIDWDEVKDVALPILNRITAHTNGSVVQLQEAGGISWSHFNADPEWGQIMAKQLLGELE 539          
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Match: A0A7S2YNF1_9STRA (Trehalose 6-phosphate phosphatase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YNF1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.480e-24
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 VQAVGGVPDLGLAANNGLAFSWPVEAA-SERSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE 285
            + A+G +P+LGLA +NG  FS P E   + R W  FD GVDWD VK  ALP+  K+TA +NG+ +K+    + WSYYS DPEWG  QA  L  ELE
Sbjct:   59 LNALGHIPNLGLAVSNGARFSPPGEPGETRRRWFTFDLGVDWDAVKRVALPVFSKYTARSNGSFVKLTSFSIGWSYYSCDPEWGSLQASHLVLELE 154          
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Match: B7G836_PHATC (Bifunctional trehalose-6-phosphate synthase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G836_PHATC)

HSP 1 Score: 103 bits (257), Expect = 9.930e-24
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    1 VQAVGGVPDLGLAANNGLAFSWPVEAA-SERSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE 285
            + A+G +P+LGLA +NG  FS P+    S R W  FD GVDWD+VK  ALP+L K+TA +NG+ +K+    + WSYYS DPEWG  QA  L  ELE
Sbjct:  931 LNALGHLPNLGLAVSNGARFSPPLAPGESTRRWMTFDLGVDWDDVKRTALPVLAKYTARSNGSFVKLTSLSIGWSYYSCDPEWGSLQAAHLVLELE 1026          
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Match: A0A7S1D6K9_CYCTE (Trehalose 6-phosphate phosphatase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6K9_CYCTE)

HSP 1 Score: 100 bits (248), Expect = 1.590e-23
Identity = 49/95 (51.58%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 VQAVGGVPDLGLAANNGLAFSWPVEAAS-ERSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGEL 282
            + A+G VP LG+  +NG  FS P      ERSW +FD GVDWD VK  ALP+L K+TA +NG+ +K+    + WSYYS DPEWG  QA  L  EL
Sbjct:   24 LNALGHVPGLGMGVSNGAHFSPPAMLNQRERSWFMFDLGVDWDAVKRVALPVLSKYTARSNGSFVKLTRFSIGWSYYSCDPEWGNQQASHLVMEL 118          
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Match: F0YRZ9_AURAN (Trehalose 6-phosphate phosphatase (Fragment) n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRZ9_AURAN)

HSP 1 Score: 99.0 bits (245), Expect = 2.810e-23
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   10 VGGVPDLGLAANNGLAFSWPVEAASE--RSWEVFDYGVDWDEVKTAALPLLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE 285
            +G  P LGLAA NGL  + P     E  R   V DYG DWD VK AALP+L++  A TNG+++  RD G+AWSYY  DPEWG+ QA QL G+LE
Sbjct:   66 LGCYPKLGLAAANGLCTTKPSLKTYETTRRCGVADYGTDWDAVKAAALPILRRHAARTNGSSVLSRDPGVAWSYYRADPEWGRIQAVQLIGDLE 159          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18196.5630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FT10_ECTSI1.460e-5494.74Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A7R9YA22_9STRA1.360e-2849.51Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1ZUA6_TRICV9.250e-2654.74Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9ZQC4_9STRA9.850e-2652.08Trehalose 6-phosphate phosphatase n=1 Tax=Craspedo... [more]
A0A835Z7K4_9STRA1.270e-2580.65Trehalose 6-phosphate phosphatase n=1 Tax=Tribonem... [more]
A0A7S2Y1J0_9STRA1.470e-2444.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2YNF1_9STRA2.480e-2451.04Trehalose 6-phosphate phosphatase (Fragment) n=1 T... [more]
B7G836_PHATC9.930e-2452.08Bifunctional trehalose-6-phosphate synthase n=2 Ta... [more]
A0A7S1D6K9_CYCTE1.590e-2351.58Trehalose 6-phosphate phosphatase n=1 Tax=Cyclopho... [more]
F0YRZ9_AURAN2.810e-2354.26Trehalose 6-phosphate phosphatase (Fragment) n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18196contigEcto-sp13_S_contig18196:1698..2382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score104.4
Seed ortholog evalue3e-20
Seed eggNOG ortholog2850.Phatr15140
Model size285
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Glycosyltransferase family 20
EggNOG OGs2XBJP@2836,COG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
Cds size285
COG Functional cat.G
CAZyGT20
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.8909256-CDS-Ecto-sp13_S_contig18196:1697..17961681462938.8909256-CDS-Ecto-sp13_S_contig18196:1697..1796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18196 1698..1796 +
1681462938.9035034-CDS-Ecto-sp13_S_contig18196:2196..23821681462938.9035034-CDS-Ecto-sp13_S_contig18196:2196..2382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18196 2197..2382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18196.5630.1prot_Ecto-sp13_S_contig18196.5630.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18196 1698..2382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18196.5630.1

>prot_Ecto-sp13_S_contig18196.5630.1 ID=prot_Ecto-sp13_S_contig18196.5630.1|Name=mRNA_Ecto-sp13_S_contig18196.5630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
VQAVGGVPDLGLAANNGLAFSWPVEAASERSWEVFDYGVDWDEVKTAALP
LLQKFTAHTNGANIKMRDSGLAWSYYSTDPEWGQTQAKQLHGELE
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mRNA from alignment at Ecto-sp13_S_contig18196:1698..2382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18196.5630.1 ID=mRNA_Ecto-sp13_S_contig18196.5630.1|Name=mRNA_Ecto-sp13_S_contig18196.5630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18196:1698..2382+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCAGGCTGTCGGGGGCGTGCCCGACCTTGGCTTGGCGGCCAACAACGG CTTGGCCTTCTCGTGGCCCGTGGAGGCGGCCAGTGAACGCAGCTGGGAGG TACGCATACGCATGCATACGATAGGTTGTAGTTCTGAAACGGGATGGCGT TCCTTGTGGGATCGTTTGCGTTCGCATCAGGAAAACCCGTGCGCACTATG TCTCGCCATTTCGCCTGTTGCGATGCACGCGTTGTGCTTTGACTGTGAAG GCCTGCTTTTTTCTTACGCAAGAGATGCAGTTGAAGGATTGAAAAGAGAT GGACCCACCGCCACCCTAATCCTCAACGAAATTCAGTCGAGTCGACCCAC CAATTCTCCTCCTCATCCAACGTGTTCCACCTTGTTACCCCAGCCAGTAG ATGCTGTTTTCCTCCTTTTGCTTCCTCTCACCCCACTATCCTCAATTGCT CTTTTTCGTCTTCACCCTTTTTCTTTCGTTTTTTTTGTTTGTCTGTAAGG TGTTCGACTACGGCGTCGACTGGGACGAGGTGAAGACGGCCGCGTTGCCC CTGCTGCAGAAGTTCACGGCACACACGAACGGGGCGAACATCAAGATGCG AGACTCGGGACTGGCCTGGAGCTACTACTCCACAGACCCGGAGTGGGGGC AGACTCAGGCCAAGCAGCTTCACGGGGAGTTGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18196:1698..2382+

>mRNA_Ecto-sp13_S_contig18196.5630.1 ID=mRNA_Ecto-sp13_S_contig18196.5630.1|Name=mRNA_Ecto-sp13_S_contig18196.5630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18196:1698..2382+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCAGGCTGTCGGGGGCGTGCCCGACCTTGGCTTGGCGGCCAACAACGG
CTTGGCCTTCTCGTGGCCCGTGGAGGCGGCCAGTGAACGCAGCTGGGAGG
TGTTCGACTACGGCGTCGACTGGGACGAGGTGAAGACGGCCGCGTTGCCC
CTGCTGCAGAAGTTCACGGCACACACGAACGGGGCGAACATCAAGATGCG
AGACTCGGGACTGGCCTGGAGCTACTACTCCACAGACCCGGAGTGGGGGC
AGACTCAGGCCAAGCAGCTTCACGGGGAGTTGGAG
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