mRNA_Ecto-sp13_S_contig18191.5629.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18191.5629.1
Unique NamemRNA_Ecto-sp13_S_contig18191.5629.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 7.620e-89
Identity = 131/168 (77.98%), Postives = 148/168 (88.10%), Query Frame = 1
Query:    1 GPTRNSCLEALIVALNETCDGASWYTSTKELQLASLEVCMACRNYPTVHLNVDEQIPRRLLATADAPPPHPKRLCWTRVPRLRARRVTWNMPTAAELRNPIFAMTDVDCLEFGLDFEGSLDAVAWPQRLKTIQFHYESVFNQPLELVQWPASLQKITFGEDFNQPIER 504
            GPTR  CLEALIVALNETCDG SWYTSTKELQLASL+ C+ACRN  TVHLNVDEQIPRRLLA+ADAPPPHPKRLCWTRVPRLR+RRVTWNMPTAA+LR PIFAMTD++ LEFG  F  SL+AV WP+ L+T++FH++S F+Q +ELVQWP  LQ +TFG DFNQPIER
Sbjct:   45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIER 212          
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 2.290e-84
Identity = 123/162 (75.93%), Postives = 134/162 (82.72%), Query Frame = 1
Query:    1 GPTRNSCLEALIVALNETCDGASWYTSTKELQLASLEVCMACRNYPTVHLNVDEQIPRRLLATADAPPPHPKRLCWTRVPRLRARRVTWNMPTAAELRNPIFAMTDVDCLEFGLDFEGSLDAVAWPQRLKTIQFHYESVFNQPLELVQWPASLQKITFGEDF 486
            G T N CL +LIVALNETCDG SWYTSTKELQ ASLE C+ACRNYP +HL VD QIPR LLA ADAPPPHPKRLCWTRVPRLRAR VTWNM  AAEL NPIFA+TDVDCLEFG  F+GSL+AV WP+RLK I+F Y S FNQPLEL++WP SLQ +  G DF
Sbjct:    8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQHLVLGGDF 169          
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 1.080e-74
Identity = 118/166 (71.08%), Postives = 133/166 (80.12%), Query Frame = 1
Query:    1 GPTRNSCLEALIVALNETCDGASWYTSTKELQLASLEVCMACRNYPTVHLNVDEQIPRRLLATADAPPPHPKRLCWTRVPRLRARRVTWNMPTAAELRNPIFAMTDVDCLEFGLDFEGSLDAVAWPQRLKTIQFHYESVFNQPLELVQWPASLQKITFGEDFNQPI 498
            GPTR+SCL+ L VALNETCDG SWYTSTKELQLASLE+CMACR+Y T+HL VD   PRRLLA ADAP PHPKRLC TRVPRLRARR TWN+PTA+ +R  IFA  DVD LEFG  F GSLDA+ WP+RLKTI+F   S  N+ L+ V WPASL+K+  G DFNQPI
Sbjct:  130 GPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCLGHDFNQPI 295          
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 4.400e-68
Identity = 110/168 (65.48%), Postives = 132/168 (78.57%), Query Frame = 1
Query:    1 GPTRNSCLEALIVALNETCDGASWYTSTKELQLASLEVCMACRNYPTVHLNVDEQIPRRLLATADAPPPHPKRLCWTRVPRLRARRVTWNMPTAAELRNPIFAMTDVDCLEFGLDFEGSLDAVAWPQRLKTIQ---------FHYESVFNQPLELVQWPASLQKITFG 477
            GP R+SCL A+IVALNET DG SWYTSTKE QLASLE C+ACRN+ T+ L VD + PRRLLA ADAPPPHPKRLC TRVPRLRARRVTW++PTAA LRN I++M D D LEF   FE SL+AVAWP+RLKT++         FH +S+F+QP+  V WP +L+++TFG
Sbjct:    6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFG 173          
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 2.690e-65
Identity = 109/156 (69.87%), Postives = 127/156 (81.41%), Query Frame = 1
Query:    1 GPTRNSCLEALIVALNETCDGASWYTSTKELQLASLEVCMACRNYPTVHLNVDEQIPRRLLATADAPPPHPKRLCWTRVPRLRARRVTWNMPTAAELRNPIFAMTDVDCLEFGLDFEGSLDAVAWPQRLKTIQFHYESVFNQPLELVQWPASLQKI 468
            GPT N+CL A+ VAL ET DG SWYTSTKELQLASLE CMACR Y T+HL VD +IPR LLA AD PP HPKRL   RVPRLRAR VTWNMPTAAELR+PIFA+ D+D L+FG  FEGSL+AV WP+RL++I FH  S FN P++LV+WPASL+++
Sbjct:   30 GPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLKRL 185          
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 1.300e-55
Identity = 102/170 (60.00%), Postives = 121/170 (71.18%), Query Frame = 1
Query:    1 GPTRNSCLEALIVALNETCDGASWYTSTKELQLASLEVCMACRNYPTVHLNVDEQIPRRLLATADAPPPHPKR-LCWTRVPRLRAR-RVTWNMPTAAELRNPIFAMTDVDCLEFGLDFEGSLDAVAWPQRLKTIQFHYESVFNQPLELVQWPASLQKITFGEDFNQPIER 504
            GP R+SCL A++VAL+ETCDG SWYTSTKELQLASL  C ACRN+ TVHL VDE IPRRLLA ADAPPP  +  +  TR P   A   V     +  E    +FAMTDVD LEFG DFEG+L+AVAWP+ LKTI  H  S F +P++L++WP SLQ + FG +F QPI R
Sbjct:  130 GPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQTLEFGWEFYQPIYR 299          
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 9.230e-55
Identity = 94/123 (76.42%), Postives = 105/123 (85.37%), Query Frame = 1
Query:    1 GPTRNSCLEALIVALNETCDGASWYTSTKELQLASLEVCMACRNYPTVHLNVDEQIPRRLLATADAPPPHPKRLCWTRVPRLRARRVTWNMPTAAELRNPIFAMTDVDCLEFGLDFEGSLDAV 369
            GP+R+SCL AL++ALNETC+G SWYTSTKELQLASLE C+ACRNY T+HL VD QIPRRLLA ADAPPPHP+ LC TRVPRLRARRVTW M  AAEL  PIFAMTDVDCL+FG   E SL+A+
Sbjct:  107 GPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG---ETSLEAL 226          
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 9.170e-54
Identity = 92/142 (64.79%), Postives = 108/142 (76.06%), Query Frame = 1
Query:   55 CDGASWYTSTKELQLASLEVCMACRNYPTVHLNVDEQIPRRLLATADAPPPHPKRLCWTRVPRLRARRVTWNMPTAAELRNPIFAMTDVDCLEFGLDFEGSLDAVAWPQRLKTIQFHYESVFNQPLELVQWPASLQKITFGE 480
            CDG  WYTSTKELQ ASLE C+ACR Y T+ L VD Q PR LLA  DAP PH KR C TRVPRLRARRV WNMPTA EL++PIFA+ DV  L+FG  FEGSL++VAWPQRLK I F + S+FNQP+E V++P SL ++   +
Sbjct:    2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSLLELRLSD 143          
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 4.490e-51
Identity = 95/146 (65.07%), Postives = 104/146 (71.23%), Query Frame = 1
Query:   31 LIVALNETCDGASWYTSTKELQLASLEVCMACRNYPTVHLNVDEQIPRRLLATADAPPPHPKRLCWTRVPRLRARRVTWNMPTAAELRNPIFAMTDVDCLEFGLDFEGSLDAVAWPQRLKTIQFHYESVFNQPLELVQWPASLQKI 468
            LI+ALNE CDG  WYTSTKELQLASLE C+ACR Y  + L VD Q PR LLA  DAPPPH KR C TRVPRLRARRV WNMPTA ELR  +FA+ DV+CL FG  F GSL+AV WP  LK I F + S FNQ        ASLQK+
Sbjct:   21 LILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIF-FSSEFNQXXXXXXXXASLQKL 165          
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.990e-22
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    4 PTRNSCLEALIVALNETC-DGAS--WYTSTKELQLASLEVCMACRNYPTVHLNVDEQIPRRLLATADAPPPHPKRLCWTRVPRLRARRVTWNMPTAAELRNPIFAMTDVDCLEFGLDFEGSLDAVAWPQRL 387
            PT +  L+ +IV LN+ C DG    W+ STKELQLASL++C ACR+   +HL V+   P RLLA AD+P    +    TRVPRLRAR V+W++ +A  L + I+A+       F       LDAV WP  L
Sbjct:   24 PTNSRFLDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSPSDGSEE--GTRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18191.5629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRF9_9PHAE7.620e-8977.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH81_ECTSI2.290e-8475.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE1.080e-7471.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE4.400e-6865.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE2.690e-6569.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI1.300e-5560.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI9.230e-5576.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYF0_9PHAE9.170e-5464.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE4.490e-5165.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0U4_9PHAE2.990e-2245.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18191contigEcto-sp13_S_contig18191:2213..3025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size609
Hectar predicted targeting categoryother localisation
Exons2
Cds size609
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.830625-CDS-Ecto-sp13_S_contig18191:2212..27161681462938.830625-CDS-Ecto-sp13_S_contig18191:2212..2716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18191 2213..2716 +
1681462938.849061-CDS-Ecto-sp13_S_contig18191:2920..30251681462938.849061-CDS-Ecto-sp13_S_contig18191:2920..3025Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18191 2921..3025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18191.5629.1prot_Ecto-sp13_S_contig18191.5629.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18191 2213..3025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18191.5629.1

>prot_Ecto-sp13_S_contig18191.5629.1 ID=prot_Ecto-sp13_S_contig18191.5629.1|Name=mRNA_Ecto-sp13_S_contig18191.5629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
GPTRNSCLEALIVALNETCDGASWYTSTKELQLASLEVCMACRNYPTVHL
NVDEQIPRRLLATADAPPPHPKRLCWTRVPRLRARRVTWNMPTAAELRNP
IFAMTDVDCLEFGLDFEGSLDAVAWPQRLKTIQFHYESVFNQPLELVQWP
ASLQKITFGEDFNQPIERGVEWPDSLQTLVFGVDFNQPVDNVRWPASLQE
LTF
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mRNA from alignment at Ecto-sp13_S_contig18191:2213..3025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18191.5629.1 ID=mRNA_Ecto-sp13_S_contig18191.5629.1|Name=mRNA_Ecto-sp13_S_contig18191.5629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18191:2213..3025+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACCTACTCGTAACTCCTGCTTGGAAGCTCTCATCGTTGCTCTGAACGA GACGTGCGACGGGGCGAGTTGGTACACGTCGACGAAGGAGCTGCAGCTGG CGTCCTTGGAGGTCTGCATGGCGTGCAGGAACTATCCGACCGTCCACTTG AATGTCGACGAACAAATTCCACGCAGGCTGCTGGCCACTGCGGACGCTCC CCCGCCGCACCCGAAGCGTTTGTGTTGGACACGCGTGCCACGGCTAAGAG CGCGCCGCGTGACATGGAACATGCCGACAGCAGCCGAACTGAGAAACCCG ATATTTGCAATGACGGACGTGGACTGCCTTGAGTTTGGCTTGGACTTCGA AGGAAGCCTTGACGCTGTGGCATGGCCACAACGGCTGAAAACGATCCAGT TCCACTACGAATCAGTATTCAACCAGCCCCTCGAACTGGTACAATGGCCG GCATCTCTGCAGAAGATCACTTTCGGAGAAGATTTCAACCAACCGATCGA ACGCGTCAAGTTTCGGGCATCGCTGCAGCACCTCATATTCCGCACGTCGA GTTCGCGTTTTGACCAATCGATTACTGGGGCGATCTTGCCGACGTCGCTG CAGCTGCTTGCCCTGGGGATAGACTTCAACCAGCCGATCGAGGACGTTGT GTGGCCGGGATCGCTGCAGCATCTTACGTTTGGGAGCAGATTCAACCAGC TTATTGAGGGCGTTGAATGGCCAGATTCGCTTCAGACGCTCGTTTTCGGA GTTGATTTCAACCAGCCAGTGGACAATGTGAGGTGGCCTGCGTCATTGCA AGAGCTGACGTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18191:2213..3025+

>mRNA_Ecto-sp13_S_contig18191.5629.1 ID=mRNA_Ecto-sp13_S_contig18191.5629.1|Name=mRNA_Ecto-sp13_S_contig18191.5629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18191:2213..3025+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACCTACTCGTAACTCCTGCTTGGAAGCTCTCATCGTTGCTCTGAACGA
GACGTGCGACGGGGCGAGTTGGTACACGTCGACGAAGGAGCTGCAGCTGG
CGTCCTTGGAGGTCTGCATGGCGTGCAGGAACTATCCGACCGTCCACTTG
AATGTCGACGAACAAATTCCACGCAGGCTGCTGGCCACTGCGGACGCTCC
CCCGCCGCACCCGAAGCGTTTGTGTTGGACACGCGTGCCACGGCTAAGAG
CGCGCCGCGTGACATGGAACATGCCGACAGCAGCCGAACTGAGAAACCCG
ATATTTGCAATGACGGACGTGGACTGCCTTGAGTTTGGCTTGGACTTCGA
AGGAAGCCTTGACGCTGTGGCATGGCCACAACGGCTGAAAACGATCCAGT
TCCACTACGAATCAGTATTCAACCAGCCCCTCGAACTGGTACAATGGCCG
GCATCTCTGCAGAAGATCACTTTCGGAGAAGATTTCAACCAACCGATCGA
ACGCGGCGTTGAATGGCCAGATTCGCTTCAGACGCTCGTTTTCGGAGTTG
ATTTCAACCAGCCAGTGGACAATGTGAGGTGGCCTGCGTCATTGCAAGAG
CTGACGTTT
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