prot_Ecto-sp13_S_contig18190.5628.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18190.5628.1
Unique Nameprot_Ecto-sp13_S_contig18190.5628.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length117
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18190.5628.1 vs. uniprot
Match: A0A6H5KW49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW49_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 2.060e-74
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 0 
Query:    1 MNRDQYLARQRRRPESSGTAVPAAAPFTIDSDEQEKLIAEITREVEHQATFFTRVFSGWLLACGVVLVLCSLKLMLAGRNGEPWPHRAILENVPDAAFHVTYLGQLLGLYLAYRVA 116
            MNRDQYLARQRRRPESSGTAVPAAAP TIDSDEQEKLIAEITREVEHQ TFFTRVFSGWLLACGVVLVLCSLKL+LAGRNGEPWPHRA+LENVPDAAFHVTYLGQLLGLYLA+RVA
Sbjct:    1 MNRDQYLARQRRRPESSGTAVPAAAPITIDSDEQEKLIAEITREVEHQTTFFTRVFSGWLLACGVVLVLCSLKLLLAGRNGEPWPHRAVLENVPDAAFHVTYLGQLLGLYLAHRVA 116
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BLAST of mRNA_Ecto-sp13_S_contig18190.5628.1 vs. uniprot
Match: D8LI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI82_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.770e-22
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0 
Query:   75 MLAGRNGEPWPHRAILENVPDAAFHVTYLGQLLGLYLAYRVAG 117
            MLAGRNGEPWPHRA+LENVPDAAFHVTYLGQLLGLYLA+RVAG
Sbjct:    1 MLAGRNGEPWPHRAVLENVPDAAFHVTYLGQLLGLYLAHRVAG 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18190.5628.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW49_9PHAE2.060e-7495.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI82_ECTSI4.770e-2295.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 77..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 114..117
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..113
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 97..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18190contigEcto-sp13_S_contig18190:2664..3500 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18190.5628.1mRNA_Ecto-sp13_S_contig18190.5628.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18190 2664..3500 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18190.5628.1 ID=prot_Ecto-sp13_S_contig18190.5628.1|Name=mRNA_Ecto-sp13_S_contig18190.5628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MNRDQYLARQRRRPESSGTAVPAAAPFTIDSDEQEKLIAEITREVEHQAT
FFTRVFSGWLLACGVVLVLCSLKLMLAGRNGEPWPHRAILENVPDAAFHV
TYLGQLLGLYLAYRVAG
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