mRNA_Ecto-sp13_S_contig18190.5628.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18190.5628.1
Unique NamemRNA_Ecto-sp13_S_contig18190.5628.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18190.5628.1 vs. uniprot
Match: A0A6H5KW49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW49_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 2.060e-74
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 MNRDQYLARQRRRPESSGTAVPAAAPFTIDSDEQEKLIAEITREVEHQATFFTRVFSGWLLACGVVLVLCSLKLMLAGRNGEPWPHRAILENVPDAAFHVTYLGQLLGLYLAYRVA 348
            MNRDQYLARQRRRPESSGTAVPAAAP TIDSDEQEKLIAEITREVEHQ TFFTRVFSGWLLACGVVLVLCSLKL+LAGRNGEPWPHRA+LENVPDAAFHVTYLGQLLGLYLA+RVA
Sbjct:    1 MNRDQYLARQRRRPESSGTAVPAAAPITIDSDEQEKLIAEITREVEHQTTFFTRVFSGWLLACGVVLVLCSLKLLLAGRNGEPWPHRAVLENVPDAAFHVTYLGQLLGLYLAHRVA 116
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BLAST of mRNA_Ecto-sp13_S_contig18190.5628.1 vs. uniprot
Match: D8LI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI82_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.770e-22
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:  223 MLAGRNGEPWPHRAILENVPDAAFHVTYLGQLLGLYLAYRVAG 351
            MLAGRNGEPWPHRA+LENVPDAAFHVTYLGQLLGLYLA+RVAG
Sbjct:    1 MLAGRNGEPWPHRAVLENVPDAAFHVTYLGQLLGLYLAHRVAG 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18190.5628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW49_9PHAE2.060e-7495.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI82_ECTSI4.770e-2295.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18190contigEcto-sp13_S_contig18190:2664..3500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size351
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003540.1
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.7883673-CDS-Ecto-sp13_S_contig18190:2663..28221681462938.7883673-CDS-Ecto-sp13_S_contig18190:2663..2822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18190 2664..2822 +
1681462938.7975843-CDS-Ecto-sp13_S_contig18190:3308..35001681462938.7975843-CDS-Ecto-sp13_S_contig18190:3308..3500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18190 3309..3500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18190.5628.1prot_Ecto-sp13_S_contig18190.5628.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18190 2664..3500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18190.5628.1

>prot_Ecto-sp13_S_contig18190.5628.1 ID=prot_Ecto-sp13_S_contig18190.5628.1|Name=mRNA_Ecto-sp13_S_contig18190.5628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MNRDQYLARQRRRPESSGTAVPAAAPFTIDSDEQEKLIAEITREVEHQAT
FFTRVFSGWLLACGVVLVLCSLKLMLAGRNGEPWPHRAILENVPDAAFHV
TYLGQLLGLYLAYRVAG
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mRNA from alignment at Ecto-sp13_S_contig18190:2664..3500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18190.5628.1 ID=mRNA_Ecto-sp13_S_contig18190.5628.1|Name=mRNA_Ecto-sp13_S_contig18190.5628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18190:2664..3500+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCGCGATCAGTATCTTGCGCGACAGCGGCGAAGACCCGAGTCCTC
CGGAACCGCTGTGCCTGCTGCTGCCCCTTTCACTATCGATAGCGACGAGC
AAGAGAAGTTGATAGCGGAAATCACCCGAGAGGTCGAGCACCAGGCGACC
TTCTTCACGGTGCGTCCTGTGCCGAAAGTTGTGGAATATATCGAGGGTTA
TGCAGTACGCGATGCCGCAGTTTTCGGGGGGTATACATGTCGGTGACCAG
CAGAACCGTTTGCCTGATGCACTCTCACCATGCCGTTGCCGCCTCGCCAT
TCACTACTGCTGTTCACCGTCTTCGGTACATTGCACTAGTGCTCGAACTT
CTGCACACTGGTGAACGGCATTCATATACTAACGAGATAAAAGATAAGGC
GGAGATTCGTATGAAACCGGCCACGGCTGTGAGAGGTTGCGGTCCAGGTC
TCCACGAATGTGTGTACGCAAATCGAAAGCAGTCGGCGCAGTGGGCTGTG
ACCGTCACCACACTCCATACCGTCCTCCCTCCCGTTCGCAACAAAAAGAA
CGAAGCACATTCTGGTGTTCCAGTCGCCTGCGATACTCATTCACTCACCT
TCGGGTATCGCTCTCTCGCTGCATGCAACCGTTCAACTCCAACAGCGAGT
TTTCTCTGGATGGCTGCTAGCGTGCGGTGTTGTGCTTGTACTCTGCTCGC
TAAAGCTGATGCTAGCTGGAAGAAACGGGGAGCCTTGGCCTCACCGAGCT
ATTCTTGAGAACGTCCCGGATGCGGCGTTCCATGTCACGTACCTCGGACA
GCTGCTGGGCTTGTACCTGGCGTACAGGGTGGCTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18190:2664..3500+

>mRNA_Ecto-sp13_S_contig18190.5628.1 ID=mRNA_Ecto-sp13_S_contig18190.5628.1|Name=mRNA_Ecto-sp13_S_contig18190.5628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18190:2664..3500+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCGCGATCAGTATCTTGCGCGACAGCGGCGAAGACCCGAGTCCTC
CGGAACCGCTGTGCCTGCTGCTGCCCCTTTCACTATCGATAGCGACGAGC
AAGAGAAGTTGATAGCGGAAATCACCCGAGAGGTCGAGCACCAGGCGACC
TTCTTCACGCGAGTTTTCTCTGGATGGCTGCTAGCGTGCGGTGTTGTGCT
TGTACTCTGCTCGCTAAAGCTGATGCTAGCTGGAAGAAACGGGGAGCCTT
GGCCTCACCGAGCTATTCTTGAGAACGTCCCGGATGCGGCGTTCCATGTC
ACGTACCTCGGACAGCTGCTGGGCTTGTACCTGGCGTACAGGGTGGCTGG
G
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