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Homology
BLAST of mRNA_Ecto-sp13_S_contig1819.5625.1 vs. uniprot
Match: D7FI50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI50_ECTSI) HSP 1 Score: 502 bits (1293), Expect = 4.710e-167 Identity = 379/411 (92.21%), Postives = 381/411 (92.70%), Query Frame = 1
Query: 16 SGRRKMSGGVPVXXXXXXXXXXXXXLVGLDGSIEQPHLAGAGSLGGGGAPATGSFSRVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGHFESPVTFVWTLAKGGAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SPTPMTSASPSAGLRLPRLRPAASAATPTTSVYLAQWQSEQRARDEVLVRVRGQPRVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPAQGSRRRRGSEHQILSLDGXXXXXXXXXXPVDGSDXXXXXXGGAVKDISPSTSPGHHARGAGFGHTRSPXXXXXXXXXXXXXXXXXXXXXXXXXX-----PTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYAPSYPYEVFVEG 1227
SGRRKMSGGVPVXXXXXXXXXXXXX GLDGSIEQP LAGAGSLGGGGAPATGSFSRVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGHFESPVTFVWTLAKGGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SPTPMTSASPSAGLRLPRLRPAA ATPTTSV+LAQWQSEQRARDEVLVRV+GQPRVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPAQGSRRRRGSEHQ LSLDG XXXXXXXXX XXXXX GGAVKDISPS SPGHH RGAGF TRSPXXXXXXXXXXXXXXXXXXXXXXXXXX PTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVY PS PYEVFVEG
Sbjct: 311 SGRRKMSGGVPVXXXXXXXXXXXXXXXGLDGSIEQPPLAGAGSLGGGGAPATGSFSRVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGHFESPVTFVWTLAKGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPTPMTSASPSAGLRLPRLRPAA--ATPTTSVHLAQWQSEQRARDEVLVRVKGQPRVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPAQGSRRRRGSEHQYLSLDGGXXXXXXXXXXXXXXXXXXXXDGGAVKDISPSASPGHHVRGAGFSRTRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVEG 719
BLAST of mRNA_Ecto-sp13_S_contig1819.5625.1 vs. uniprot
Match: A0A6H5JW59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW59_9PHAE) HSP 1 Score: 450 bits (1157), Expect = 3.360e-151 Identity = 349/406 (85.96%), Postives = 351/406 (86.45%), Query Frame = 1
Query: 31 MSGGVPVXXXXXXXXXXXXXLVGLDGSIEQPHLAGAGSLGGGGAPATGSFSRVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGHFESPVTFVWTLAKGGAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPTPMTSASPSAGLRLPRLRPAASAATPTTSVYLAQWQSEQRARDEVLVRVRGQPRVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPAQGSRRRRGSEHQILSLDGXXXXXXXXXXPVDGSDXXXXXXG-GAVKDISPSTSPGHHARGAGFGHTRSPXXXXXXXXXXXXXXXXXXXXXXXXXX------PTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYAPSYPYEVFVEG 1227
MSGGVPV L GLDGSIEQP L GA SLGGGGAPATGSF RVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGH ESPVTFVWTL KGGAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MTSASPSAGLR P SAATPTTSVYLAQWQSEQRARDEVLVRV+GQP+VKLNRVFEVSLQVRNLSDSARDLVVMFTEDPAQ SRRRR SEHQ LSLDGXXXXXXXXXX XXXXXX GAVKDISPS SPGHH RGAGFG TR XXXXXXXXXXXXXXXXXXXXXXXXXX PTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYAPS PYEVFVEG
Sbjct: 1 MSGGVPVGGAFAP-------LEGLDGSIEQPPLVGASSLGGGGAPATGSFLRVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGHLESPVTFVWTLGKGGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-MTSASPSAGLR-----PTVSAATPTTSVYLAQWQSEQRARDEVLVRVKGQPKVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPAQDSRRRRDSEHQTLSLDGXXXXXXXXXXXXXXXXXXXXXXXXGAVKDISPSASPGHHNRGAGFGRTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYAPSCPYEVFVEG 393
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1825 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-10_003550.2 |
| Cds size | 1200 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462938.5881383-UTR-Ecto-sp13_S_contig1819:0..30 | 1681462938.5881383-UTR-Ecto-sp13_S_contig1819:0..30 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1819 1..30 + |
| 1681462938.6546216-UTR-Ecto-sp13_S_contig1819:3818..4413 | 1681462938.6546216-UTR-Ecto-sp13_S_contig1819:3818..4413 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1819 3819..4413 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462938.5986922-CDS-Ecto-sp13_S_contig1819:30..96 | 1681462938.5986922-CDS-Ecto-sp13_S_contig1819:30..96 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1819 31..96 + |
| 1681462938.6091142-CDS-Ecto-sp13_S_contig1819:602..833 | 1681462938.6091142-CDS-Ecto-sp13_S_contig1819:602..833 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1819 603..833 + |
| 1681462938.6241014-CDS-Ecto-sp13_S_contig1819:1204..1546 | 1681462938.6241014-CDS-Ecto-sp13_S_contig1819:1204..1546 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1819 1205..1546 + |
| 1681462938.6350584-CDS-Ecto-sp13_S_contig1819:2161..2383 | 1681462938.6350584-CDS-Ecto-sp13_S_contig1819:2161..2383 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1819 2162..2383 + |
| 1681462938.644878-CDS-Ecto-sp13_S_contig1819:3479..3818 | 1681462938.644878-CDS-Ecto-sp13_S_contig1819:3479..3818 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1819 3480..3818 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1819.5625.1 >prot_Ecto-sp13_S_contig1819.5625.1 ID=prot_Ecto-sp13_S_contig1819.5625.1|Name=mRNA_Ecto-sp13_S_contig1819.5625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=400bp
MSGGVPVMSGGVPVGGASAPLVGLDGSIEQPHLAGAGSLGGGGAPATGSF SRVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGHFESPV TFVWTLAKGGAAAVAGSSDAATAAAAGAPTAASAVSSAAQRQSSSSRSSS PTPMTSASPSAGLRLPRLRPAASAATPTTSVYLAQWQSEQRARDEVLVRV RGQPRVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPAQGSRRRRGSEHQI LSLDGGGGGGGGGSTPVDGSDSDGDDDGGAVKDISPSTSPGHHARGAGFG HTRSPPPPPPRETAQDAAATAAAAAAAAAAAPTCLLGDLLPVDAAVPLGR LERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYAPSYPYEVFVEG* back to topmRNA from alignment at Ecto-sp13_S_contig1819:1..4413+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1819.5625.1 ID=mRNA_Ecto-sp13_S_contig1819.5625.1|Name=mRNA_Ecto-sp13_S_contig1819.5625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4413bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1819:1..4413+ (Ectocarpus species13 EcNAP12_S_4_19m) GGAGGGGGGAGGGGGAGCGGAAGGAGGAAGATGTCGGGAGGAGTGCCAGT
CATGTCGGGAGGAGTGCCGGTGGGGGGGGCGTCCGCTCCTCTTGTGGTGC
GTGTTTCTGTCGCTGTTTTTTAGGAAATGCGTGCGTGGAGGGATGGTGGG
CTGTTTTTATTGATACAAGCCTTGATGGTTTGTTGGCAGGGAGCTGCCGG
GCCGTTGTGTTGTTTGGTCTTGGTCTTGGGTGTCGTTAGAGTTGAAATTG
GTGGTTGGTGGTTGGTGGTTGGTCGTTGAACTTGCTGCTCTTGTTCTATG
TTGTTGATGGTGGCAGCGCCGCCTCTGACGTTTGGTGTGTCTCGTAGGCG
CGGCGAGGGCTAGGCAGAGTCGCCGCATGAATGACTACAGCTGCGGTCGT
TTCTGCTTCAGCTGCTTCTCCCTAGACACCATCGTTACCAACCGCTCCTT
CAAACGAAAAGGTCCGCCGCTCTCTCTCTCTCACTCTCCCCGCTCCACCC
CCTTGTCCCGCTTTTTAATTTCGCCGTAAACAACTAGTGAAATAACAATA
ATAACAACAACGACAACAATCGCCAACGAAACACGCCGATACATACGAAC
AGGGGCTGGACGGGTCGATCGAGCAGCCGCATCTTGCGGGGGCAGGTAGC
CTCGGAGGGGGCGGCGCTCCGGCCACGGGCAGCTTCTCGAGAGTGTTCTC
CGCCTCCTGGGTGGCGAAGCCGCCCCTGCCGCTGGAGCTGGCCCCCGGGG
AAGTGCAGGGCTTCGTGGTCTCCATCTCTCCTGCGGGGGAACCGCTACCC
CCTCGGCGGGCAGGCGGGCATTTCGAGAGTCCGGTGAGTTTTTTCTTTTT
TTTTTTGGTGTCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT
GCTTGCTTGCTTGCTTGCTCTCTCGTCCGTCGGTGCTTTCTTGTGATGAG
AGGCACACATTTTCTGGAGCACGCAGAAAATGTGGCGAACGTGTTTGTTC
CCTTTTTGTAACTTGCTTGCTCGTCGGTGTGTCTTGTAAAAGGCACACAT
GAGCGCCATGTATTAGGCACACACTGTCTCGAACACATACTGCTGGTAGC
GATGTGTTTGTTCCTTTTTAATTTGTCTCGATTTCGCCCCCGATATGTAC
ACATGCCATCGTTATTTCCCCCCCAATTAACCGGTTACACCCGTCAATGA
ACAGGTCACGTTCGTGTGGACCCTAGCCAAGGGCGGCGCCGCCGCCGTCG
CAGGCAGCAGCGACGCCGCAACGGCCGCGGCGGCAGGAGCCCCCACTGCT
GCTTCTGCTGTTTCCTCAGCCGCGCAGCGGCAATCGTCCTCCTCGCGGTC
TTCGTCCCCGACGCCGATGACGTCGGCCTCGCCTTCGGCAGGGTTGCGGC
TGCCGCGGTTGCGGCCGGCGGCGTCGGCAGCGACGCCGACAACCTCGGTA
TACCTGGCGCAGTGGCAGTCGGAGCAGCGGGCGCGCGACGAGGTTCTGGT
GAGGGTGAGGGGGCAGCCGAGGGTGAAGCTCAACCGGGTGTTCGAGGTGT
GTGTGTGTGTGTTTTTTTTGGGGGGGGGGGGGGGTGTTATTTGTATCGAC
CGCGCTAACCGGCTTACCAATGGAAAGACTTGTGTGTGTTTGTCTTTAGT
ATTAGCATTGACCATGTATGTGCGTTTTTTCACACGAACGAACATCCTTT
CTATCTTTCTATCCGAAAGGATTTTACCGATACGGGCGGGCGCAGGAGTT
GGGCGACATAGCCATGCTTCTGAACTACAGGGAAAATACTCAATTCTGCC
AGGCAGCACTGTCTGTGTGTTTGTGTTTGGTTTTGCGTCCATGCGTGCCG
CAGGGCACCCGGGGCGTCGAGGTGTTCACTGATTGTTGTTTGTCGGTCAC
TGTCTCTATGTTTCGCTGTGCCTGCAGCTTGGGTCTCATCTTGTGTGTTC
GTTTCGCGTCGGAACCTGTCTCGCTCGTTAGCTGGCCGGTCTTTCTGTAC
AGCTTTTGTTGTTTTCGAGAACGTGGGTGATGTGCTACATCCATCTATCC
TCCTGGTGTGCGTTTGTGTGCTTCCGTCATGCCCACGGCATCTTCTCACG
CTGACTTACCCGCCCCACGGCAACAACACCAAGCAGTACACCCCGACGTT
GTGCACCACAGGTGTCTCTTCAGGTGCGCAACCTCTCGGATAGCGCTCGG
GACTTGGTCGTGATGTTCACGGAGGATCCCGCCCAAGGCAGCCGGCGCCG
CCGCGGTAGTGAGCATCAAATCTTGTCATTGGACGGCGGCGGCGGCGGCG
GTGGTGGCGGAAGCACCCCCGTTGATGGTAGCGATTCGGACGGCGACGAT
GACGGTGGGGCTGTCAAGGACATCTCCCCTTCGGTGAGCGTTGCAGTAGC
CTTCGTAGGATTTTTTTTTCTGTGGAGTACCGTATACGACACAAGATAAC
ACACCCCGTCGTCTGATTTTTCAGAGCTCGATTCCTCAACAGCAGAGCGA
GTCACAGCGCCGAGAACGGCGGCGTTGCAGCCGTCTGGTCGAGAGCTCTC
CGACAATGTATCGTTTCGTTTATGCATCCTCTTGGTCGTGGAGTAATCGA
GCTTTGAAAATGGCTCCAGGGGGTATGTTATCTTGTGTCGTATACGGTGA
GCATGTCGGATAAAGCATGCAATCGGGGAAGTTGGAGTAGGGTTGGGGTT
AGGGATAGGGTCTGCGTATCCCCTCTCTGTTCTTCTCACTCATTTATGAT
CGCTAGGGCGGTCTGAGAGTTGATGTTTGCACTATTGTGTAGGCGGCGGT
ACTGGTTGTTGTTGTCGTTATTGTCGTTATTGTTGATGTTGTTGCTATTT
GTTGTTTGCTTGGGAATGCGTGATAGCCTGTCTAAAGTTCATCTACCGAA
AAATCCGTTGCCTGTATGCGGATCACATGCAGCACGCGCCAGCCACCCTA
CGCGCCAGGGGAATTACGAAATACAGGCTCAAAACAGATGAACGATTAAG
AAGTTGAACACATCGTGGTCAGTTCACAATATTCTACCGTAGACTACCAT
GTCGGGAGACCCCACAGCGGAAATATGAAACGAGCCTCGGCAATACTTGT
AAAGAATAAGAAAGAGATTGAAGGTTTTCCCTGCCGCAGCACGCGATCGG
TGCGGTTCGGCTTCATCGATCTTCCCTACCCTACCCTTCAAACAACAAGA
CCGTTCACCTTCCGGAGAATTCACACCAACCCCCTAGCATATCTGATTTG
GCATAGCAAACAATGGATGATGGCCAGCTTTTGGTTGATCATCCTTGTGA
ACCGTCGCCTGGGCCGGCGACAACCCGGCCACATACGTATCGATTTGTCC
AAGCGTTGTAGGAATGCGACGTCAATAATCTAACGTCAGTACGGCATGCG
TTTACATGAATACACCTCCCCCATTTGTCTCCCTCCCTCCCTCCCTCCCT
CCCTCCATCCTTCCCTTTATCCCTTTGAGACCTCCCCGGGGCACCACGCC
CGAGGCGCGGGCTTCGGCCACACCCGCTCCCCACCGCCACCGCCGCCACG
AGAAACCGCGCAAGACGCCGCTGCCACGGCGGCAGCAGCGGCGGCGGCGG
CGGCAGCAGCGCCGACGTGCCTCCTCGGGGATCTCCTGCCGGTGGACGCT
GCGGTGCCCCTCGGCAGGTTGGAGAGGGGCGCGGAGCACGGGGCGACGGT
CAGGCTTACGGCGGCGAGGGCGGGGCTGGCCCGGCTGTCGAGCCTCTGCC
TCAGGGACGCGCTGACCGGGTCGGTCTACGCCCCTTCCTACCCTTACGAG
GTGTTCGTGGAGGGATAGAGGAAGGAAGAGGCTGTATAGTAGCAGTTGTG
CACGAAACGGCCCCGCGTCGATGACGGTTGGTTGGAGACGTGTGTGTCTC
GTAGCGTGTGCCATTTTTTTTTGTTTCATGTATTTTTTTTCTGCTGTTTT
TTAGATTTTTCGAAACGACCCAAGCCCTTCGAATGGACGTGTCCGTGGGG
GGAAGAGGGAGTCGTTCATGGTAATTCGCGCGTAAAAAATGGCGGGCGCC
GTGATTGGTACGCTGGCCGGAGGCGATGTAACATGGTGGGGTGCGGGTGT
AGGGTGTTTGAGGCTAGCGCCTTTGTTTAGCGAACGCCTTCGTCGGGACA
AAATGGTGCTTTTTTCCCATCCCACCATAGACAAGACATTGGGGCTTGAT
GCGAGGCGCCAACGTTAGCACACGGGTGGGTTGCACTAGGTACTGCTGTA
CAGGTAGGCCTACCGAGCTCTTGGTAGACCGCAGGTTGTACCGTTAAAAA
AATGGTCTCGCGTGTCGACAGCATTTAGCAGCAGCCATCGTCGAAGGGAG
GGAAGGACAAGTACGCTGCAGCCGTAATCCTATTGATGTTCTTCTCGATG
AATATCTGTGGAC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1819:1..4413+ >mRNA_Ecto-sp13_S_contig1819.5625.1 ID=mRNA_Ecto-sp13_S_contig1819.5625.1|Name=mRNA_Ecto-sp13_S_contig1819.5625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1200bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1819:1..4413+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTCGGGAGGAGTGCCAGTCATGTCGGGAGGAGTGCCGGTGGGGGGGGC GTCCGCTCCTCTTGTGGGGCTGGACGGGTCGATCGAGCAGCCGCATCTTG CGGGGGCAGGTAGCCTCGGAGGGGGCGGCGCTCCGGCCACGGGCAGCTTC TCGAGAGTGTTCTCCGCCTCCTGGGTGGCGAAGCCGCCCCTGCCGCTGGA GCTGGCCCCCGGGGAAGTGCAGGGCTTCGTGGTCTCCATCTCTCCTGCGG GGGAACCGCTACCCCCTCGGCGGGCAGGCGGGCATTTCGAGAGTCCGGTC ACGTTCGTGTGGACCCTAGCCAAGGGCGGCGCCGCCGCCGTCGCAGGCAG CAGCGACGCCGCAACGGCCGCGGCGGCAGGAGCCCCCACTGCTGCTTCTG CTGTTTCCTCAGCCGCGCAGCGGCAATCGTCCTCCTCGCGGTCTTCGTCC CCGACGCCGATGACGTCGGCCTCGCCTTCGGCAGGGTTGCGGCTGCCGCG GTTGCGGCCGGCGGCGTCGGCAGCGACGCCGACAACCTCGGTATACCTGG CGCAGTGGCAGTCGGAGCAGCGGGCGCGCGACGAGGTTCTGGTGAGGGTG AGGGGGCAGCCGAGGGTGAAGCTCAACCGGGTGTTCGAGGTGTCTCTTCA GGTGCGCAACCTCTCGGATAGCGCTCGGGACTTGGTCGTGATGTTCACGG AGGATCCCGCCCAAGGCAGCCGGCGCCGCCGCGGTAGTGAGCATCAAATC TTGTCATTGGACGGCGGCGGCGGCGGCGGTGGTGGCGGAAGCACCCCCGT TGATGGTAGCGATTCGGACGGCGACGATGACGGTGGGGCTGTCAAGGACA TCTCCCCTTCGACCTCCCCGGGGCACCACGCCCGAGGCGCGGGCTTCGGC CACACCCGCTCCCCACCGCCACCGCCGCCACGAGAAACCGCGCAAGACGC CGCTGCCACGGCGGCAGCAGCGGCGGCGGCGGCGGCAGCAGCGCCGACGT GCCTCCTCGGGGATCTCCTGCCGGTGGACGCTGCGGTGCCCCTCGGCAGG TTGGAGAGGGGCGCGGAGCACGGGGCGACGGTCAGGCTTACGGCGGCGAG GGCGGGGCTGGCCCGGCTGTCGAGCCTCTGCCTCAGGGACGCGCTGACCG GGTCGGTCTACGCCCCTTCCTACCCTTACGAGGTGTTCGTGGAGGGATAG back to top
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