prot_Ecto-sp13_S_contig18180.5623.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18180.5623.1
Unique Nameprot_Ecto-sp13_S_contig18180.5623.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length132
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18180.5623.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 2.010e-65
Identity = 113/132 (85.61%), Postives = 113/132 (85.61%), Query Frame = 0 
Query:    1 MRTGEDGAPSPDIVSYKEVVNACGRAGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQVKEALDILDQNLSGQNGVNAFSYSSIIDALARQ 132
            MRTGEDGA                  GRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQVKEALDILDQNLSGQ GVNAFSYSSIIDALARQ
Sbjct:  416 MRTGEDGAXXXXXXXXXXXXXXXXXXGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQVKEALDILDQNLSGQRGVNAFSYSSIIDALARQ 547
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BLAST of mRNA_Ecto-sp13_S_contig18180.5623.1 vs. uniprot
Match: D7G393_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G393_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 5.810e-65
Identity = 108/132 (81.82%), Postives = 111/132 (84.09%), Query Frame = 0 
Query:    1 MRTGEDGAPSPDIVSYKEVVNACGRAGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQVKEALDILDQNLSGQNGVNAFSYSSIIDALARQ 132
            MRTGEDGA                  GRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRG EWRRSLSV+Y+DMPAY VDPDKFCYNMALRACADAGQVKEALDILDQ+LSGQ GVNAFSYSSIIDALARQ
Sbjct:  322 MRTGEDGAXXXXXXXXXXXXXXXXXXGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGREWRRSLSVVYDDMPAYEVDPDKFCYNMALRACADAGQVKEALDILDQDLSGQRGVNAFSYSSIIDALARQ 453
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BLAST of mRNA_Ecto-sp13_S_contig18180.5623.1 vs. uniprot
Match: A0A813I2W2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I2W2_POLGL)

HSP 1 Score: 53.5 bits (127), Expect = 1.220e-5
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0 
Query:   14 VSYKEVVNACGRAGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYN 88
            V+    V+ACGRA RWD ALS V     + L+L   VF A   +  RG +W+R+L +L  D+   G+   + C N
Sbjct:  153 VAVTTAVSACGRARRWDLALSLVREMQQSSLQLDVFVFGAATSSCERGQQWQRALRLLMRDLRRAGLVASEICCN 227
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BLAST of mRNA_Ecto-sp13_S_contig18180.5623.1 vs. uniprot
Match: A0A813HX94_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HX94_POLGL)

HSP 1 Score: 53.5 bits (127), Expect = 1.260e-5
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0 
Query:   14 VSYKEVVNACGRAGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYN 88
            V+    V+ACGRA RWD ALS V     + L+L   VF A   +  RG +W+R+L +L  D+   G+   + C N
Sbjct:  155 VAVTTAVSACGRARRWDLALSLVREMQQSSLQLDVFVFGAATSSCERGQQWQRALRLLMRDLRRAGLVASEICCN 229
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BLAST of mRNA_Ecto-sp13_S_contig18180.5623.1 vs. uniprot
Match: I0Z131_COCSC (PPR_long domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z131_COCSC)

HSP 1 Score: 52.0 bits (123), Expect = 3.750e-5
Identity = 34/105 (32.38%), Postives = 53/105 (50.48%), Query Frame = 0 
Query:   15 SYKEVVNACGRAGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQVKEALDILDQNLSGQNGVNA 119
            +Y +++  CG+AGRW+ A+        AG E T  +   ++ A    G+ R +L +L + M   G+ PD+     ALR CA AG    AL I ++ L G+    A
Sbjct:  177 TYAKLIERCGKAGRWEDAVELFLGMQVAGTEATKGICLVLLGALKACGQARPALQLL-DAMAQAGIGPDRETQMAALRVCAKAGAWTPALRIWEK-LEGRGASGA 279
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18180.5623.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KYW8_9PHAE2.010e-6585.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G393_ECTSI5.810e-6581.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A813I2W2_POLGL1.220e-538.67Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813HX94_POLGL1.260e-538.67Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
I0Z131_COCSC3.750e-532.38PPR_long domain-containing protein n=1 Tax=Coccomy... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 14..38
e-value: 0.046
score: 14.0
coord: 86..108
e-value: 0.015
score: 15.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 14..47
e-value: 6.2E-4
score: 17.8
coord: 85..109
e-value: 4.3E-4
score: 18.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 83..113
score: 7.739
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 12..46
score: 9.679
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 47..82
score: 8.769
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 118..132
score: 5.546
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 72..132
e-value: 6.1E-12
score: 47.2
coord: 3..71
e-value: 1.1E-10
score: 43.2
NoneNo IPR availablePANTHERPTHR47447FAMILY NOT NAMEDcoord: 10..128
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 60..132
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18180contigEcto-sp13_S_contig18180:301..1807 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18180.5623.1mRNA_Ecto-sp13_S_contig18180.5623.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18180 301..3194 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18180.5623.1 ID=prot_Ecto-sp13_S_contig18180.5623.1|Name=mRNA_Ecto-sp13_S_contig18180.5623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MRTGEDGAPSPDIVSYKEVVNACGRAGRWDQALSWVDAAVDAGLELTASV
FCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQV
KEALDILDQNLSGQNGVNAFSYSSIIDALARQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf