mRNA_Ecto-sp13_S_contig18180.5623.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18180.5623.1
Unique NamemRNA_Ecto-sp13_S_contig18180.5623.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18180.5623.1 vs. uniprot
Match: D7G393_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G393_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 3.270e-68
Identity = 133/219 (60.73%), Postives = 146/219 (66.67%), Query Frame = 3 
Query:  288 SIACCILVRRNESGGCRRVSDERKAASVA---------------SCRYCPT-SPCRVTLRKKTALGSRGA-------LRRALDILEAMRTGEDGAPSPDIVSYKEVVNACGRAGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQVKEALDILDQNLSGQNGVNAFSYSSIIDALARQ 875
            +IA     R  E+     + DE +AA+VA               + R  P  SP R++     +   R         L+RALDILEAMRTGEDGA                  GRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRG EWRRSLSV+Y+DMPAY VDPDKFCYNMALRACADAGQVKEALDILDQ+LSGQ GVNAFSYSSIIDALARQ
Sbjct:  235 NIAIGACARAGEASLAVSLFDEMRAAAVADSPTAGDGVLAVGEGTARPSPVPSPDRLSYNSTLSACGRAVTADDAEWLQRALDILEAMRTGEDGAXXXXXXXXXXXXXXXXXXGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGREWRRSLSVVYDDMPAYEVDPDKFCYNMALRACADAGQVKEALDILDQDLSGQRGVNAFSYSSIIDALARQ 453
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BLAST of mRNA_Ecto-sp13_S_contig18180.5623.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.080e-67
Identity = 121/142 (85.21%), Postives = 123/142 (86.62%), Query Frame = 3 
Query:  450 LRRALDILEAMRTGEDGAPSPDIVSYKEVVNACGRAGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQVKEALDILDQNLSGQNGVNAFSYSSIIDALARQ 875
            ++RALDILEAMRTGEDGA                  GRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQVKEALDILDQNLSGQ GVNAFSYSSIIDALARQ
Sbjct:  406 VQRALDILEAMRTGEDGAXXXXXXXXXXXXXXXXXXGRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQVKEALDILDQNLSGQRGVNAFSYSSIIDALARQ 547
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18180.5623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G393_ECTSI3.270e-6860.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYW8_9PHAE1.080e-6785.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18180contigEcto-sp13_S_contig18180:301..3194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score214.9
Seed ortholog evalue2.2e-53
Seed eggNOG ortholog2880.D7G393
Model size875
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size396
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18180.5623.1prot_Ecto-sp13_S_contig18180.5623.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18180 301..1807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.4302428-CDS-Ecto-sp13_S_contig18180:300..4211681462938.4302428-CDS-Ecto-sp13_S_contig18180:300..421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18180 301..421 -
1681462938.4433577-CDS-Ecto-sp13_S_contig18180:847..10481681462938.4433577-CDS-Ecto-sp13_S_contig18180:847..1048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18180 848..1048 -
1681462938.4535809-CDS-Ecto-sp13_S_contig18180:1733..18071681462938.4535809-CDS-Ecto-sp13_S_contig18180:1733..1807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18180 1734..1807 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.4633286-UTR-Ecto-sp13_S_contig18180:1807..18311681462938.4633286-UTR-Ecto-sp13_S_contig18180:1807..1831Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18180 1808..1831 -
1681462938.476193-UTR-Ecto-sp13_S_contig18180:2235..25691681462938.476193-UTR-Ecto-sp13_S_contig18180:2235..2569Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18180 2236..2569 -
1681462938.4883778-UTR-Ecto-sp13_S_contig18180:3073..31941681462938.4883778-UTR-Ecto-sp13_S_contig18180:3073..3194Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18180 3074..3194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18180.5623.1

>prot_Ecto-sp13_S_contig18180.5623.1 ID=prot_Ecto-sp13_S_contig18180.5623.1|Name=mRNA_Ecto-sp13_S_contig18180.5623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MRTGEDGAPSPDIVSYKEVVNACGRAGRWDQALSWVDAAVDAGLELTASV
FCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALRACADAGQV
KEALDILDQNLSGQNGVNAFSYSSIIDALARQ
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mRNA from alignment at Ecto-sp13_S_contig18180:301..3194-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18180.5623.1 ID=mRNA_Ecto-sp13_S_contig18180.5623.1|Name=mRNA_Ecto-sp13_S_contig18180.5623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18180:301..3194- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTCAAGGTGGCAAGAGGCGTTTTTGCTGTTGGAGACTATGCAGGAGCG
CGGGGTCACTACGGATCTTTACACGCTCAATTCAGCACTCAAGGCGTGCG
GCTCTGCTGGGCAGGTGGAACGTGAGCGTGGAATGCACTTAGTGCGTGGC
GAACCTCTATCAATTTTCGCGTTTCAAGACTAGGCGTTCTGTTGCGTTGT
TGATATTGCTTGGTTGAGCGTGTCTAAATTGGCAAAGGTCTTGGGGAATA
CATGGAAAGCCTTTAAACGAGTGACTTTGTAACGGCAACAGTAGACAGCA
GTATTGGTGGTGGTGGTCTGCCGCTCCTACCACCGCTAATGTCGTGTTTC
GTGTGTTGTTTTGAAGAAGACGAAGGCGACCCCTGCCTTTGTGAGAGAAA
GAAGTGCGTTGCGGCGGTGGCAGCAGCAGCAACAATGTCAACTATGACTG
CCGCCACCACCACCACCACCACCACCACAACAACAATAACAACAACAACA
ACAACAAGAGACATTTGGTGAACCCACACTTATGTGTATCGACTTCATCT
CACGCCCCCCTTTCTCTTTCCGTTTGTCTTTCCCTTTCGATTCCGGCATG
CACTGTCGCTTCATATTTTCGCAAGTGCTGCTCGCCCTCTTGAGAGAGAT
GCGCTCCAGCAGCCGAAGTAACGACGGCAGAGGCAGCAACGACAACCAGA
GGGGCGACGGGGATGCTGCTACTTTTCTGTTGCCGGCACCGGACGTGGTT
TCCTTCAACATCGCGATTGGTGCCTGCGCGAGGGCGGGTGAAGCATCGCT
TGCTGTATCCTTGTTCGACGAAATGAGAGCGGCGGCTGTCGCAGAGTAAG
TGATGAGAGGAAGGCGGCCTCCGTTGCGAGTTGTAGATACTGCCCAACTT
CCCCTTGTCGGGTGACATTGAGAAAGAAGACCGCCCTTGGTTCTCGAGGA
GCGTTGCGTGTACGAACCCCTCTTGCTTCGATGCACGGGAGGTTAACGCA
GGCTAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATGC
GGATTGGCTGCAGAGGGCGTTGGATATTTTGGAGGCGATGAGGACCGGTG
AAGATGGTGCTCCGTCGCCGGATATTGTTTCGTACAAGGAGGTCGTGAAT
GCATGTGGGCGGTGAGATGAGAGTGAGCTGGTGATTTCGACCGGCCGTGT
TGTCGTCGTTTGACTGTTGGAATACCTCGCATCTTGTTAGGGCCGAGATG
GACAGATGCTCCTCATTAGACGATGGAGGTGCCAAGCATCATTGCAGTAC
CCAGACGGAGAAGAAGAACATGCGCTTTTCTTCCCGTTTCAAATGCCCAG
AGAAAATCTGATTGCCCTTTCGTTTAATTCGCCAACTCGATCTGCCATGA
TTTGGTCGGGCGTTGAGGTTAAGCGAGGGGGAAAGCGGGGATAAGAAATA
GGACGACGTGATTGACGAGATGGAACAAGAAAGTTAACACGACAAGAGCG
ATGGTAAGTCCAGGGATAGACGAGGGCTGAGAGGAAGAGAGAGAACAGCC
AGATGCACAACGAATCGCCTCGATGGAGCGTTCCACCGGTTGTAACAACG
CCGCCTTTTTGTCATACTCGCCGTATAATGAACATTATTCATTGAACGAT
GGCAGCAGACTTACGCTTCACATGGACAGGTTGTTGACAGAGAGAGTCTC
AGTTACTGTAGTTCCTGATATGATCGTATGAAGACTGCGAAAGTCCCCAG
GTGGAGGAAATGACGATGGTTTTGAGTTGCCCGGCCTTTTCGCCCGGCCG
TCACTGATCGATGTTCCCGGTTTGCCTCAAATACGTATTGAATCAGGGCC
GGGCGCTGGGATCAGGCGCTGTCCTGGGTGGATGCTGCGGTTGACGCTGG
TCTGGAGCTGACTGCCTCGGTGTTCTGCGCGATAATAATTGCGTTCGGTC
GAGGGGGCGAGTGGCGCCGCTCATTGTCGGTGCTCTACGAAGACATGCCT
GCCTACGGGGTTGATCCGGACAAATTTTGCTACAACATGGCTCTAAGGTC
CGGTGATATGTGCGCGTTTTTGTGTTGTTCAACTGCATCGATCGCGCAAG
CGAGCTGACCTAGCCTCTCTGCTCGCCCGCTGTTGACCCCAGCTAGAGCA
GCACATTCTTGGCTTTGTTTGTGCCTTGCCGGGAACGAATACGACTTCTT
TTTTCACCGACCACCAACAAGAAAATGTGACACTCGATTTTTTGCTTTCT
CGTGTAGACGATACCGGCAACTGAGTCTTATGGTTCTGCAAGGCCCCGCT
TTTTTTTCGTTAGCTCATCAGCTGGCCCTTAAAGTTGTTCGTTGCTGGGT
TCCAAGTGCCTTCTCATGCCGTCCTGTACGTGGGTGTCGGTCACGCGAAA
AAGCGGACACAAGAAGTAGTGAATCAACTGAAAACCGCGTATTATTTTGG
TTGTGTTCTTCCCTGCTCGGCAGGGCGTGCGCGGATGCGGGTCAGGTGAA
GGAGGCCCTGGACATCCTCGACCAGAATCTTTCCGGACAAAATGGGGTCA
ACGCCTTCAGCTACAGCTCCATTATCGACGCGCTCGCACGACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18180:301..3194-

>mRNA_Ecto-sp13_S_contig18180.5623.1 ID=mRNA_Ecto-sp13_S_contig18180.5623.1|Name=mRNA_Ecto-sp13_S_contig18180.5623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18180:301..3194- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGACCGGTGAAGATGGTGCTCCGTCGCCGGATATTGTTTCGTACAA
GGAGGTCGTGAATGCATGTGGGCGGGCCGGGCGCTGGGATCAGGCGCTGT
CCTGGGTGGATGCTGCGGTTGACGCTGGTCTGGAGCTGACTGCCTCGGTG
TTCTGCGCGATAATAATTGCGTTCGGTCGAGGGGGCGAGTGGCGCCGCTC
ATTGTCGGTGCTCTACGAAGACATGCCTGCCTACGGGGTTGATCCGGACA
AATTTTGCTACAACATGGCTCTAAGGGCGTGCGCGGATGCGGGTCAGGTG
AAGGAGGCCCTGGACATCCTCGACCAGAATCTTTCCGGACAAAATGGGGT
CAACGCCTTCAGCTACAGCTCCATTATCGACGCGCTCGCACGACAG
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