mRNA_Ecto-sp13_S_contig18171.5619.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18171.5619.1
Unique NamemRNA_Ecto-sp13_S_contig18171.5619.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Match: D7FRS4_ECTSI (MoCF_biosynth domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRS4_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.280e-47
Identity = 80/108 (74.07%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRTRPRDEIR---------------GASEEYLPAYMLSDWSMERAGRGERKTDSLACELR 279
            PSSDWMPPFMRVNPVIDWNYGQVW FLRDFELPYCSLYDEGYTSLG    T P   +R               G  EEYLPAYMLSDWS+ERAGRGERKTDSLACELR
Sbjct:  203 PSSDWMPPFMRVNPVIDWNYGQVWGFLRDFELPYCSLYDEGYTSLGNLDNTFPNPYLRKRASSAAVSDDGGEEGIEEEYLPAYMLSDWSLERAGRGERKTDSLACELR 310          
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Match: F0XY18_AURAN (PAPS_reduct domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY18_AURAN)

HSP 1 Score: 124 bits (311), Expect = 4.590e-35
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRTRPRDEIRGASEEYLPAYMLSDWSMERAGR 240
            PSSDWMPPFMRVNP++DW YG VWAFLR F+LPYC+LYD GYTSLG    T     + G    Y PA++L DWS+ERAGR
Sbjct:   25 PSSDWMPPFMRVNPILDWTYGDVWAFLRAFDLPYCALYDGGYTSLGSAPTTSRNPALLGDGGAYKPAHLLEDWSLERAGR 104          
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Match: A0A835ZI25_9STRA (MoaB/Mog domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI25_9STRA)

HSP 1 Score: 134 bits (338), Expect = 6.200e-35
Identity = 63/104 (60.58%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRTRPRDEIR------GAS-----EEYLPAYMLSDWSMERAGRGERKTDSLACELR 279
            PSSDWMPPFMRVNP+I+W YGQ+W FLR F+LPY SLYD GYTSLG    T+    +R      GAS     E+Y PAYMLSDW++ERAGRG R   +L C+LR
Sbjct:  215 PSSDWMPPFMRVNPIIEWEYGQIWQFLRTFDLPYPSLYDRGYTSLGNVDDTQRNPALRKRGSGDGASGNDADEDYYPAYMLSDWTLERAGRGARPESTLGCDLR 318          
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Match: A0A7S3ZSN1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.570e-34
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRTRPRDEIRGASEEYLPAYMLSDWSMERAGRGERKTDSLA 267
            PSS+WMP FMRVNP++DW+YG VW+FLR F+LPYCSLYDEGYTSLG    T+ R+    ++EEY PA+ML DWS+ERAGR E+     A
Sbjct:  178 PSSEWMPAFMRVNPILDWSYGDVWSFLRTFDLPYCSLYDEGYTSLGSVSSTK-RNPALLSNEEYKPAFMLEDWSLERAGRVEKPKKKAA 265          
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Match: A0A7S1TPJ7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPJ7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 8.560e-34
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRTRPRDEIR--GASEEYLPAYMLSDWSMERAGRGERKTDSLA--CELR 279
            PSSDWMP FMRVNP+I+W+YG +W FLR F LPYCSLYD GYTSLG+   T P   +R  G+  +Y PAYMLSDWS+ERAGR  R + S    C+LR
Sbjct:  255 PSSDWMPAFMRVNPIIEWDYGHIWHFLRLFRLPYCSLYDVGYTSLGKKSDTWPNPALRKSGSETQYWPAYMLSDWSLERAGRSSRSSGSTTPECDLR 351          
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Match: A0A7S1FST5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FST5_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.740e-33
Identity = 60/92 (65.22%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    1 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRTRPRDEIR---GASEEYLPAYMLSDWSMERAGRGERKTDSLA 267
            PSSDWMPPFMRVNPV+DW+YG VW FLR F+LPYCSLYDEGYTSLG+   TRP   +R   G    Y PAYML+DW+ ERAGR  +K    A
Sbjct:  265 PSSDWMPPFMRVNPVLDWDYGHVWHFLRLFDLPYCSLYDEGYTSLGKIEDTRPCPALRRGDGDENGYWPAYMLADWTQERAGRISKKVKQSA 356          
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Match: A0A7R9YFQ5_9STRA (Hypothetical protein n=3 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFQ5_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.780e-33
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    1 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRTRPRDEIR--GASEEYLPAYMLSDWSMERAGR 240
            PSSDWMPPFMRVNPV+DW YG +W F+R F++PY +LYD+GYTSLG+   T+P   ++  G ++EYLPA MLSDWS+ERAGR
Sbjct:  253 PSSDWMPPFMRVNPVLDWEYGDIWRFIRLFQIPYVNLYDKGYTSLGKKSDTQPNPALKKPGTADEYLPADMLSDWSLERAGR 334          
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Match: A0A7S3XQX3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQX3_HETAK)

HSP 1 Score: 128 bits (321), Expect = 1.470e-32
Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRTRPRDEIRGASEEYLPAYMLSDWSMERAGRGE---RKTDSLACEL 276
            PSS WMPPFMRVNPV+DW+YGQVW FLR FELPY +LYD G+TSLG+   T P   +R     YLPAY+LSDW+ ERAGRG    +   SL C+L
Sbjct:  220 PSSAWMPPFMRVNPVLDWDYGQVWEFLRAFELPYPALYDRGFTSLGKMDDTFPNPALRREDGSYLPAYLLSDWTQERAGRGSGGAQAPASLDCDL 314          
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Match: A0A7S2SEI8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEI8_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.100e-32
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRT--RPR------DEIRGAS-EEYLPAYMLSDWSMERAGRGERKTDSLACEL 276
            PSSDW+PPFMRVNP+++WNYG VW FLR ++LPYCSLYDEGYTSLG+   T   PR      D   GA    +LPA++L+DW+ ER+GRG+ + D  A +L
Sbjct:  175 PSSDWLPPFMRVNPILNWNYGHVWQFLRSYDLPYCSLYDEGYTSLGKVSDTSHNPRLCRTGGDHNDGAPPSRFLPAFLLADWADERSGRGKTRPDHHAADL 275          
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Match: B8BQL2_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQL2_THAPS)

HSP 1 Score: 122 bits (306), Expect = 1.270e-31
Identity = 57/95 (60.00%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    1 PSSDWMPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRTRPRDEIRGAS------EEYLPAYMLSDWSMERAGRGERKTDSLA 267
            PSS +MPPF+RVNP+++W YG VW FLR FELPYCSLYD+GYTSLG    T P   ++  S      EEY PAYML DWS ERAGR  +K  S A
Sbjct:  157 PSSHYMPPFLRVNPILNWTYGHVWHFLRVFELPYCSLYDDGYTSLGTVKDTLPCPALKKGSNDTNGGEEYWPAYMLKDWSQERAGRVSKKKQSTA 251          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18171.5619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRS4_ECTSI1.280e-4774.07MoCF_biosynth domain-containing protein n=2 Tax=Ec... [more]
F0XY18_AURAN4.590e-3565.00PAPS_reduct domain-containing protein (Fragment) n... [more]
A0A835ZI25_9STRA6.200e-3560.58MoaB/Mog domain-containing protein n=1 Tax=Tribone... [more]
A0A7S3ZSN1_9STRA2.570e-3462.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1TPJ7_9STRA8.560e-3461.86Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1FST5_9STRA3.740e-3365.22Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7R9YFQ5_9STRA5.780e-3364.63Hypothetical protein n=3 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3XQX3_HETAK1.470e-3262.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SEI8_9STRA5.100e-3256.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8BQL2_THAPS1.270e-3160.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18171contigEcto-sp13_S_contig18171:30..1034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score155.2
Seed ortholog evalue1.4e-35
Seed eggNOG ortholog2880.D7FRS4
Model size282
KEGG rclassRC00002
KEGG koko:K00953
KEGG ReactionR00161
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.flavin adenine dinucleotide biosynthetic process
EggNOG OGsCOG0175@1,KOG2644@2759
EC2.7.7.2
Cds size267
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.1854002-UTR-Ecto-sp13_S_contig18171:29..441681462938.1854002-UTR-Ecto-sp13_S_contig18171:29..44Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18171 30..44 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.1972725-CDS-Ecto-sp13_S_contig18171:44..2121681462938.1972725-CDS-Ecto-sp13_S_contig18171:44..212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18171 45..212 +
1681462938.2056088-CDS-Ecto-sp13_S_contig18171:935..10341681462938.2056088-CDS-Ecto-sp13_S_contig18171:935..1034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18171 936..1034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18171.5619.1prot_Ecto-sp13_S_contig18171.5619.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18171 45..1034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18171.5619.1

>prot_Ecto-sp13_S_contig18171.5619.1 ID=prot_Ecto-sp13_S_contig18171.5619.1|Name=mRNA_Ecto-sp13_S_contig18171.5619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MPPFMRVNPVIDWNYGQVWAFLRDFELPYCSLYDEGYTSLGEGLRTRPRD
EIRGASEEYLPAYMLSDWSMERAGRGERKTDSLACELR*
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mRNA from alignment at Ecto-sp13_S_contig18171:30..1034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18171.5619.1 ID=mRNA_Ecto-sp13_S_contig18171.5619.1|Name=mRNA_Ecto-sp13_S_contig18171.5619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1005bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18171:30..1034+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTCCAGCGACTGGATGCCCCCGTTCATGCGAGTGAACCCGGTGATCGA CTGGAATTACGGGCAGGTCTGGGCCTTCCTGCGGGATTTCGAGCTACCAT ACTGCTCGCTGTACGACGAGGGATACACGTCCCTAGGTGAGGGTCTTCGC ACACGGCCACGAGACGAAATTCGGGGGGCATCGGTTTTTTCGATATCAAA TTAATTTGGACCGCGATCTGTATTGGTGATATTTTGTCGTGGTGTGTGTA TACGTACATGGAGCGTGTTTTGTCTTCCTGTTCCCGTCTTGCTAGCGGCC ATCATCGTATCATCATATCTGTGACATCCGTGAGGGTACCATCGCTGTTG CTGTTGCTGCTGCTATTGCTGTTGTTGCTCATGTTGCCGCTGCCGTATTG ATGTCCTTAACACAGACTGCCGTGTTGGCGTTTCGCGAGTAAGTAGATTG AGACCATGGCACCCAACATCCAAGCACGTTCTGTTTACTACTGTATACGA GAGACAACTGCATCGGTGCCGGGTTATGGTCGAGGTTATCTCGAGTATTG ACTGCACTACTGTGGAATGCTTGGGCGATTGTTCGGCACAGACCAGAGTA TCCGTGTGTGCACGACAATAGTGGGCATCTCCCACAAGCACTGATGAGTC TAACAATCGCAAATCGGTGCTGTGTGTATTTTGTGCTTGGTTTGTATTTT GTGCTTTATGCGGAAAGTTCTGCATCCGTTAGTCTCGTTCTGAACGGCCG GAGTCGCCCGTTTCACCTTTTCCATCGGTGCCGCCCTCCGCAGGCAACCT GGACAACACTTTCCCCAACCCCTACCTGAGAAAGCGCGCGAGTTCGGCTG CGGTTTCCGATGATGGGGGCGAGGAGGGGGTAGAGCCCAGGGGGGAGGTG ATAGAGGAGGAGTATCTGCCTGCGTACATGCTCTCGGATTGGTCGATGGA AAGAGCTGGGAGAGGCGAACGGAAGACAGACAGTCTCGCGTGCGAGTTGA GGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18171:30..1034+

>mRNA_Ecto-sp13_S_contig18171.5619.1 ID=mRNA_Ecto-sp13_S_contig18171.5619.1|Name=mRNA_Ecto-sp13_S_contig18171.5619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18171:30..1034+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCGTTCATGCGAGTGAACCCGGTGATCGACTGGAATTACGGGCA
GGTCTGGGCCTTCCTGCGGGATTTCGAGCTACCATACTGCTCGCTGTACG
ACGAGGGATACACGTCCCTAGGTGAGGGTCTTCGCACACGGCCACGAGAC
GAAATTCGGGGGGCATCGGAGGAGTATCTGCCTGCGTACATGCTCTCGGA
TTGGTCGATGGAAAGAGCTGGGAGAGGCGAACGGAAGACAGACAGTCTCG
CGTGCGAGTTGAGGTGA
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