mRNA_Ecto-sp13_S_contig1817.5618.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1817.5618.1
Unique NamemRNA_Ecto-sp13_S_contig1817.5618.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1817.5618.1 vs. uniprot
Match: D7FQV8_ECTSI (Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV8_ECTSI)

HSP 1 Score: 1060 bits (2741), Expect = 0.000e+0
Identity = 561/646 (86.84%), Postives = 574/646 (88.85%), Query Frame = 2
Query:    2 VMGTVTSFLVYPIYQRGSPAAIQNPRAPSCRRVSIATTKTIAAAVPSMAVWAIAVYVAGVCRWGVASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVAAAHEDLDAAGVATNADGGDRAAAASGKLAISPARRSVPRGDPRSNSPSPTASGDDGGARAADPALTFREFAFFLVLAPSLVCRPQHLASGARRPPRVAAAASEFLHAGLTYIAVHVACSALFAPALRVLAEALHSGGVAGWADEEDWAELRRTDGSGWWLHDSSGSLGSLFASGGGGCVDGGVGCGPGWTFSDDGTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRRRRSRVARDEDNPPATHGNSCDSNGVHDDRPKGTPPTTGGKARHGAEAGIVTRWWLASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPVAADTSTPGTRPTGRRAFTSIAAAGGEGGGFSAETEAANSAAVPSTLARPTNAKGTVNKCSGNDFGAENEEAPDGQHTGHPSKDVANNNGVVTGQQGNEAPRLGRKGAPRPKIGRRRGWAAVVVYGGMYMPLALVVDYCVWQWWRHTHMAE 1939
            VMGTVTSFLVYPIYQR SPAAIQNPRA  CRRVS  T KTIAAAVPSMAVW           WG+ASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVAAAHEDLDAAGVA NAD GDRAAAASGKLAISPARRSV + DPRSNSPS TA+GDDG A AA+PALTFREFAFFLVLAPSLVCRPQ+L SGARRPPRVAAAASEFLHAGLTY+AVHVACSALFAPALRVLAEALHSGGVAGWADEEDWAELRRTDGSGWWLHDSS S+GSLFASGGG CV GGVGC PGWTF+DDGTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALR RR RVAR+ED PPAT+GNS  SNGVHD RPKGT  TTGGKARHGA+AGIVTRWWLASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPV ADTSTPGTRPTGRRAFTSIAAAGG+G GFSAETEAANSAAVP T                         A DGQH GHPSKDVAN NGVVTGQQG+EAPRLGRK   RPKIGRRRGWAAVVVYGGMYMPL LVVDYCVWQWWRHTHMAE
Sbjct:   94 VMGTVTSFLVYPIYQRCSPAAIQNPRALPCRRVSSTTAKTIAAAVPSMAVWXXXXXXXXXXXWGIASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVAAAHEDLDAAGVAENADEGDRAAAASGKLAISPARRSVLQRDPRSNSPSSTANGDDGCAHAANPALTFREFAFFLVLAPSLVCRPQYLKSGARRPPRVAAAASEFLHAGLTYVAVHVACSALFAPALRVLAEALHSGGVAGWADEEDWAELRRTDGSGWWLHDSSRSIGSLFASGGGSCVGGGVGCVPGWTFADDGTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRHRRRRVAREEDKPPATNGNSGGSNGVHDYRPKGTSSTTGGKARHGADAGIVTRWWLASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPVVADTSTPGTRPTGRRAFTSIAAAGGDGVGFSAETEAANSAAVPRTAXXXXXXXXXXXXXXXXXXXXXXXXAADGQHAGHPSKDVANKNGVVTGQQGSEAPRLGRKEPLRPKIGRRRGWAAVVVYGGMYMPLTLVVDYCVWQWWRHTHMAE 739          
BLAST of mRNA_Ecto-sp13_S_contig1817.5618.1 vs. uniprot
Match: A0A6H5KXI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI3_9PHAE)

HSP 1 Score: 694 bits (1791), Expect = 2.990e-242
Identity = 377/456 (82.68%), Postives = 385/456 (84.43%), Query Frame = 2
Query:    5 MGTVTSFLVYPIYQRGSPAAIQNPRAPSCRRVSIATTKTIAAAVPSMAVWAIAVYVAGVCRWGVASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVAAAHEDLDAAGVATNADGGDRAAAASGKLAISPARRSVPRGDPRSNSPSPTASGDDGGARAADPALTFREFAFFLVLAPSLVCRPQHLASGARRPPRVAAAASEFLHAGLTYIAVHVACSALFAPALRVLAEALHSGGVAGWADEEDWAELRRTDGSGWWLHDSSGSLGSLFASGGGGCVDGGVGCGPGWTFSDDGTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYG----------------------------PWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRRRRSRVARDEDNPPATHGNSCDSNGVHDDRPKGTPPTTG 1288
            MGTVTSFLVYPIYQR SPAAIQNPRAP CRRVS AT KTIAAAVPSMAVWA          WGVASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAV AAHEDLDAA VA NAD GDRAAAASG+LAISPARRSV +GDPRSN PSPTA+GDDGGARAA+PALTFREFAFFL LAPSLVC+PQ+LASGARRPPRVAAAASEFLHAGLTYIAVHVACSALFAPALRVLA  LHSGGVAGWADEEDWAELRRTDGSGWWL+DSSGSLGSLFASGGGGCV GGVGCGPGWTFSDDGTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYG                            PWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRR              T+GNS  SNGVHD RPKGT  TTG
Sbjct:   94 MGTVTSFLVYPIYQRCSPAAIQNPRAPPCRRVSSATAKTIAAAVPSMAVWAXXXXXXXXXXWGVASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVVAAHEDLDAARVAANADDGDRAAAASGQLAISPARRSVLQGDPRSNPPSPTANGDDGGARAANPALTFREFAFFLALAPSLVCQPQYLASGARRPPRVAAAASEFLHAGLTYIAVHVACSALFAPALRVLAGVLHSGGVAGWADEEDWAELRRTDGSGWWLYDSSGSLGSLFASGGGGCVHGGVGCGPGWTFSDDGTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGELSFSLVGDRFTPSAGLEGQALRHDSAGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRRXXXXXXXXXXXXXXTNGNSGGSNGVHDHRPKGTSSTTG 549          
BLAST of mRNA_Ecto-sp13_S_contig1817.5618.1 vs. uniprot
Match: A0A6H5KWE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE0_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 3.160e-97
Identity = 156/179 (87.15%), Postives = 159/179 (88.83%), Query Frame = 2
Query: 1403 MRRTVWPFSTFFLAVTASMAPFWDTLFPVAADTSTPGTRPTGRRAFTSIAAAGGEGGGFSAETEAANSAAVPSTLARPTNAKGTVNKCSGNDFGAENEEAPDGQHTGHPSKDVANNNGVVTGQQGNEAPRLGRKGAPRPKIGRRRGWAAVVVYGGMYMPLALVVDYCVWQWWRHTHMAE 1939
            MRRTVWPFSTFFLAVTASMAPFWDTLFPV ADTSTPGTRPTGRRAF SIAA G +GGG SAETEA NSAAVPST ARPT A+GTVN CSGND GAEN E  DGQH GHPSK VAN N VVTGQQG+EAPRLGRKGAP PKIGRRRGWAA VVYGGMYMPLALVVDY VWQWWRHTHMAE
Sbjct:    1 MRRTVWPFSTFFLAVTASMAPFWDTLFPVVADTSTPGTRPTGRRAFASIAAGGSDGGGTSAETEAENSAAVPSTAARPTTAQGTVNACSGNDIGAENGEPADGQHAGHPSKGVANKNRVVTGQQGSEAPRLGRKGAPWPKIGRRRGWAAAVVYGGMYMPLALVVDYFVWQWWRHTHMAE 179          
BLAST of mRNA_Ecto-sp13_S_contig1817.5618.1 vs. uniprot
Match: D7FQW2_ECTSI (Sterol or diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW2_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 4.490e-64
Identity = 220/670 (32.84%), Postives = 291/670 (43.43%), Query Frame = 2
Query:  140 SMAVWAIAVYVAGVCRWGVASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVAAAHEDLDAAGVATNADGGDRAAAASGKLAISPARRSVPRGDPRSNSPSPTASGDDGGARAADPALTFREFAFFLVLAPSLVCRPQHLASGARRPPRVAAAASEFLHAGLTYIAVHVACSALFAPALRVLAEALHS-------------------------------------GGVAGWADEEDWAELRRTDGSGWWLHDSSGSLGSLFASGGGGCVDGGVGCGPGWTFSDD----GTGHPGLT----VAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRRRRSRVARDEDNPPATHGNSCDSNGVHDDRPKGTPPTTGGKARHGAEAGIVTRWW----LASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPVAADTSTPGTRPTGRRAFTSIAAAGGEGGGFSAETEA----ANSAAVPSTLARPTNAKGTVNKCSGNDFGAENEEAPDGQHTGHPSK-----DVANNNG---VVTGQQGNEAPRLGRKG--------APRPKIGRR-RGWAAVVVYGGMYMPLALVVDYCVWQWWRHTHMAE 1939
            ++ +W +AV+ +    WG+ASGL VGL  A L+LKS SF Q      A    A  AA         AT A  G                     G+ RS        GD  G  A  P LTF EF FF++ APSLVC P+ L   ARR P    A SEF HA L ++A+H ACSA FAP +RV+A A+ S                                     G   GW D   WA           +H + GS G  F+      +DGG       ++ +     G G  GL     +A A+ L + VFSPM+HF+ FY F+H VCLGCAEL+GYPDRN YGPWWL+ ++    +RLWS PVHRW+S  + RP+  VG + A   +  R         A  G  C  +                            R W    L ++  +FL S +VHEAV FVAMRRT WP STF L ++  +   WD ++PV             R   +  AA  G  G  S +       A  A +PS+ A   +  G     +    G+   E  DG    H  K     D A + G    +T + G+++   G  G        +   K GR  RGW AV  + G  + + L VD+ +WQWWRHT + E
Sbjct:  177 TLPIWTLAVWGSVNLDWGLASGLSVGLLSACLSLKSASFAQSWCCFNAPVTTAKEAAE--------ATGAPSG---------------------GETRSRE---DVCGD--GDLAGPPLLTFGEFLFFILAAPSLVCEPEFLRKHARRAPCPGRAFSEFSHAVLVFVALHAACSAFFAPVMRVVAAAVFSTPSPSLVGESAQAALASDFRGCGSGDGEHTCGGSPFNGATIGWVDCVGWAGAEG-------IHTAGGSGGWFFSL----LLDGGGPETAAISYFESLFCGGAGGAGLAGWWGIAAASALAMLVFSPMVHFMAFYGFWHCVCLGCAELWGYPDRNFYGPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPV--VGHKNAAFSQPGRSGGGVRRGLA--GTLCRKSEEXXXXXXXXXXXXXXXXXXXXXXXQTQRRWTWRRLLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPV-------------RSIISESAAVSGASGEDSGDRHGTGPPAEQAVLPSSSAATRSQPGATATAADVSCGSTVVETSDGTLEDHSEKSYVVVDQARDLGEQHAITSKNGSDSCGTGGGGGVDGAGRVSNTKKAGREWRGWGAVAFFEGASLVMGLAVDFLMWQWWRHTLLYE 784          
BLAST of mRNA_Ecto-sp13_S_contig1817.5618.1 vs. uniprot
Match: A0A6H5J9L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L7_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.690e-59
Identity = 225/700 (32.14%), Postives = 293/700 (41.86%), Query Frame = 2
Query:  140 SMAVWAIAVYVAGVCRWGVASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVAAAHEDLDAAGVATNADGGDRAAAASGKLAISPARRSVPRGDPRSNSPSPTASGDDGGARAADPALTFREFAFFLVLAPSLVCRPQHLASGARRPPRVAAAASEFLHAGLTYIAVHVACSALFAPALRVLAEALHS----------------------------------------GGVAGWADEEDWA--ELRRTDG-SGWW----LHDSSGS-------LGSLFASGGGGCVDGGVGCGPGWTFSDDGTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRRRRSRVARDEDNPPATHGNSCDSNGVHDDRPKGTPPTTGGKARHGAE------------------------------AGIVTRW-W--LASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPVAADTSTP---------------GTRPTGRRAF--TSIAAAGGEGGGFSAETEAANSAAVPSTLARPTNAKGTVNKCSGNDFGAENEEAPDGQHTGHPSKDVANNNGVVTGQQGNEAPRLGRKGAPRPKIGRRRGWAAVVVYGGMYMPLALVVDYCVWQWWRHT 1927
            ++ +WA+AV+ +    WG+ASGL VGL  A L+LK+ SF Q      A     V  A E  + AG      GG R             R  V R D R                A  P LT  EF FF++ APSLVC  + L   ARR PR   A SEF HA L ++A+H ACSA FAP +RVLA A+ S                                        G + GW D   WA  E   T G SG W    L D  GS         SLF  G GG      G    W             +A A+ L + VFSPM+HF+ FY F+H VCLGCAEL+GYPDRN YGPWWL+ ++    +RLWS PVHRW+S  + RP+  VG + A                A     C S GV     +G   T+    R   E                                   RW W  L ++  +FL S +VHEAV FVAMRRT WP STF L ++  +   WD ++PV +  S                 GT P    A   +S AA G +    +  T+ +  + V  T      + GT+   S N +    +    G+     SK+  +++    G  G +    GR    +      RGW AV  + G  + + L  D+ +WQWWRHT
Sbjct:  174 TLPIWALAVWGSVNLDWGLASGLSVGLLSACLSLKNASFAQSWCRFNAP----VTTAKEAAETAGAP---GGGARP------------REEVCRDDDR----------------AGPPLLTLGEFLFFILAAPSLVCEQEFLRERARRAPRPGRAFSEFSHAVLVFVALHAACSAFFAPVMRVLASAVFSPPSPSLAAESAHEALACDFRGGSSGGSGGGEYTCGGLPSIGAMIGWVDCVGWAGAEGIHTAGRSGGWFFSLLLDGGGSETAVASYFESLFCGGAGG-----AGLAGWWA------------IAAASALAMLVFSPMVHFMAFYGFWHCVCLGCAELWGYPDRNFYGPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPI--VGHKSA----------------AIPQPGCSSGGVR----RGLAGTS---CREPEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRWTWRRLMALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSAASGEDRGGRHGTGPPAEPALWPSSSAATGSQPCATTTATDISCGSRVAET------SDGTLEDHSENSYVVVEQARDLGEQHAGTSKNGGDSSCGTGGGGGVDG--AGRVSKTKKAGSEWRGWGAVAFFEGASLVMGLAFDFLMWQWWRHT 788          
BLAST of mRNA_Ecto-sp13_S_contig1817.5618.1 vs. uniprot
Match: D7FUK9_ECTSI (Sterol or diacylglycerol O-acyltransferase, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK9_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 2.020e-57
Identity = 180/509 (35.36%), Postives = 235/509 (46.17%), Query Frame = 2
Query:    5 MGTVTSF--LVYPIYQ----RGSPAAIQNPR--APSC----RRVSIATTKTIAAAVPSMAVWAIAVYVAGVCRWGVASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVAAAHEDLDAAGVATNADGGDRAAAASGKLAISPARRSVPRGDPRSNSPSPTASGDDGGARAADPALTFREFAFFLVLAPSLVCRPQHLASGARRPPRVAAAASEFLHAGLTYIAVHVACSALFAPALRVLAEALHSGGVAGWADEEDWAELRRTDGSGWWLHDSSGSLGSLFASGGGGCVDGGVGCGPGWTFSDDGTGHPGLTVAIAACLGV-FVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRRRRSRVARDEDNPPATHGNSCDSNGVHDDRPKGTPPTTGGKARHGAEAGIVTRW-WLASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPV 1489
            MG V S   LVYP++     R +PA   N    APS     R V    T   A  +PS AVWA AV+      WG+  GL + L CA +TLK  SFV                      A+ VAT                            PRS                    LTF E+ FFL L+PSLVC  + +   ARR  R   AASEF HA LT++  H    ++ AP+LR+   A+  G V G A    WAEL    G+GW     S + GS   +GG                 D GT   G  VA+   L + FV S  +HF++FYAF+H +CLG AEL+G+PDRN YG WWL+ D+ RD+ R+WS PVHRWLS  V  PM+E+                           C ++    D  K +PP+          AG  ++W W+ +V+ +F+VSGV HEAV ++AMR T WPF+TF L V   +  FWD +FP+
Sbjct:   47 MGVVASISILVYPLHSLLSPRTTPATTDNTATAAPSSDGGGRPVG---TYVAAVGLPSAAVWAFAVWAQRRAAWGLVPGLWLALFCACVTLKITSFVA---------------------ASAVATPPXXXXXXXXXXXXXXXXXXXXXXXXAGPRS--------------------LTFGEYLFFLFLSPSLVCEVRLMKVSARRRSRPLRAASEFFHAVLTFLCAHCVVGSILAPSLRLFFSAVSPGWVEGAA--AGWAELEAAGGAGW----PSWTAGSALLAGG--------------DKEDSGT-RLGQLVALGCFLWMLFVVSSALHFMVFYAFWHCICLGMAELWGFPDRNLYGCWWLLFDEPRDFLRMWSTPVHRWLSTCVHWPMLEL---------------------------CSTSDEGVDGTK-SPPSAELSTATAEVAGDPSKWTWVPAVLATFVVSGVFHEAVVYIAMRGTCWPFNTFLLCVGGVLVIFWDIVFPL 462          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1817.5618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FQV8_ECTSI0.000e+086.84Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpu... [more]
A0A6H5KXI3_9PHAE2.990e-24282.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWE0_9PHAE3.160e-9787.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQW2_ECTSI4.490e-6432.84Sterol or diacylglycerol O-acyltransferase n=1 Tax... [more]
A0A6H5J9L7_9PHAE1.690e-5932.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUK9_ECTSI2.020e-5735.36Sterol or diacylglycerol O-acyltransferase, partia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1817contigEcto-sp13_S_contig1817:10362..15155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2325
Hectar predicted targeting categoryother localisation
Exons5
Cds size1938
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1817.5618.1prot_Ecto-sp13_S_contig1817.5618.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1817 10766..15151 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.061989-UTR-Ecto-sp13_S_contig1817:10361..104431681462938.061989-UTR-Ecto-sp13_S_contig1817:10361..10443Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1817 10362..10443 -
1681462938.0729127-UTR-Ecto-sp13_S_contig1817:10464..107651681462938.0729127-UTR-Ecto-sp13_S_contig1817:10464..10765Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1817 10465..10765 -
1681462938.144557-UTR-Ecto-sp13_S_contig1817:15151..151551681462938.144557-UTR-Ecto-sp13_S_contig1817:15151..15155Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1817 15152..15155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.0909863-CDS-Ecto-sp13_S_contig1817:10765..114201681462938.0909863-CDS-Ecto-sp13_S_contig1817:10765..11420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1817 10766..11420 -
1681462938.108118-CDS-Ecto-sp13_S_contig1817:11946..121901681462938.108118-CDS-Ecto-sp13_S_contig1817:11946..12190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1817 11947..12190 -
1681462938.1241033-CDS-Ecto-sp13_S_contig1817:12704..136671681462938.1241033-CDS-Ecto-sp13_S_contig1817:12704..13667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1817 12705..13667 -
1681462938.1341581-CDS-Ecto-sp13_S_contig1817:15075..151511681462938.1341581-CDS-Ecto-sp13_S_contig1817:15075..15151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1817 15076..15151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1817.5618.1

>prot_Ecto-sp13_S_contig1817.5618.1 ID=prot_Ecto-sp13_S_contig1817.5618.1|Name=mRNA_Ecto-sp13_S_contig1817.5618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=646bp
MGTVTSFLVYPIYQRGSPAAIQNPRAPSCRRVSIATTKTIAAAVPSMAVW
AIAVYVAGVCRWGVASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVA
AAHEDLDAAGVATNADGGDRAAAASGKLAISPARRSVPRGDPRSNSPSPT
ASGDDGGARAADPALTFREFAFFLVLAPSLVCRPQHLASGARRPPRVAAA
ASEFLHAGLTYIAVHVACSALFAPALRVLAEALHSGGVAGWADEEDWAEL
RRTDGSGWWLHDSSGSLGSLFASGGGGCVDGGVGCGPGWTFSDDGTGHPG
LTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGPWW
LVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRRRRSRVARDED
NPPATHGNSCDSNGVHDDRPKGTPPTTGGKARHGAEAGIVTRWWLASVVC
SFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPVAADTS
TPGTRPTGRRAFTSIAAAGGEGGGFSAETEAANSAAVPSTLARPTNAKGT
VNKCSGNDFGAENEEAPDGQHTGHPSKDVANNNGVVTGQQGNEAPRLGRK
GAPRPKIGRRRGWAAVVVYGGMYMPLALVVDYCVWQWWRHTHMAE*
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mRNA from alignment at Ecto-sp13_S_contig1817:10362..15155-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1817.5618.1 ID=mRNA_Ecto-sp13_S_contig1817.5618.1|Name=mRNA_Ecto-sp13_S_contig1817.5618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4794bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1817:10362..15155- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGATGGGGACAGTAACGTCGTTCTTGGTGTACCCCATCTACCAGCGGG GTTCTCCGGCGGCCATTCAGAATCCCAGAGGTGCGCAGAAGGGAAAAGTG CTGCGTCCGTTCAGAGTCTTCAGGCTTGTGCATCAAACGTCGAAACAATC CCGACAGTACGGTCGTCCGACGCGAGTGACTGCCGTGGTACAGTAGTGGA TGCCAATCTTGGGGCGCTTCCATTGTTGTTTGTTTCCCAGAGAGCGCCTA CATAATTGTGCCAAAAGCTTTGTTTCAAGCACAAAACTGAACCGCACCGC TAGCAGCGGCTGCCGAGAAATCTATGGCCATCGAAACGTTCGGAGCGTGT TCTCTAGGGAGTTGATGAAGGGCGCGAGAGTAGCGAGTTGAGGGATGCGC CGATGGTGAGAGGTCGCTTCGAAAACGGTCGGAGTTCACTTGCGCTCTAT CTTTCACGTCGACTTCTGACTCGAAAATCTCAACACCGAAACCGCTCCGG CCACTACTCCCCCGTCAAACTCTCGGTACTCTGGCGTCCCATAGCCGACA CACTTGCTGTTCCCTCCGTCAGAAAACTGAAGCACACGCCCGCAAACGGT TTCCATGACGATTTATGCCCGTGTGGTCTGCGGCACTATCTCATGCTGCG TACACGGAAGATACTGTCCCTGGCGAGACAGACCCCTTGTACGTTGATGG GGGTGTCACTATTTGGTTGATAGAACCACGTGTCCGAGACCGATTTTCCG GCTGCACAAGAATCGACCGTATCCCCGGTAATGCGGATGTGCCCGTTCGA GAAGGACTCTCGAGAGCAAATCGGAGTTTGCCCACAATCAGGACCTGGGT CCATCAGGTTGTTCTTGGACATCGAACCGGTGTCAGCTGAGAGGAATGCA CGCCATTTTTTCGTCGACTCCCAGACCTAAACTTTTTCTCTTTGCCTCGG CGAACAGTCGTAAAATAGATTGAGGTGTTTGGTCCCAGANNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATCTCGGTAGAC AAGAGTGCAAACCACGCGCAACTGTTGTGCTTCCGTCACCGTGCTGTACT TCAAGCTGCTTGCAAAAAGCACCTTGCGCAACCCCTAGTTTGTCTAGTGT TGTACTCATGCCTTGGTAGGAAACGTGGGTGCCGGGATAAACGTGACCCC CCTCTCGCCTCCCTCCCCCCACGGTGACACTCGTGCAGCCCCTTCGTGCC GGCGAGTTTCTATCGCAACAACAAAGACGATCGCCGCCGCCGTCCCGTCG ATGGCCGTGTGGGCCATCGCGGTGTACGTGGCCGGGGTTTGCCGCTGGGG CGTCGCTTCGGGGCTATGCGTCGGCCTGCAGTGCGCCGCTCTTACGCTCA AGTCGGTGTCGTTCGTGCAGAAGGCTCGCCCTGTCGCCGCTGAAGCAGCG ATCGCCGTGGCGGCGGCGCATGAAGACCTTGATGCGGCAGGGGTGGCAAC AAACGCAGACGGGGGCGACCGCGCAGCGGCTGCGAGCGGAAAGTTAGCAA TATCTCCTGCACGTAGAAGTGTTCCTCGAGGGGATCCGAGGTCAAATTCA CCAAGCCCAACGGCGAGCGGCGACGACGGTGGCGCCCGCGCGGCCGACCC CGCCCTTACCTTTCGAGAGTTCGCGTTCTTCCTCGTGCTGGCCCCGTCCC TGGTGTGTCGGCCGCAGCACCTCGCGTCGGGGGCCCGAAGGCCGCCTCGC GTCGCCGCCGCTGCCTCGGAGTTCTTGCACGCGGGTCTCACCTACATCGC GGTGCACGTGGCCTGCTCGGCCCTGTTCGCCCCGGCGCTGCGCGTCCTGG CGGAAGCCCTGCACTCTGGGGGCGTCGCCGGCTGGGCGGACGAGGAAGAC TGGGCGGAGTTGCGCCGCACCGATGGCAGCGGGTGGTGGTTGCACGATAG TAGCGGGAGCCTTGGCTCGCTCTTCGCGAGCGGCGGAGGAGGTTGCGTGG ATGGGGGGGTTGGTTGTGGCCCCGGGTGGACCTTTTCCGACGACGGGACG GGTCATCCGGGCTTGACGGTGGCCATCGCCGCGTGTCTCGGTGTGTTCGT CTTCTCTCCGATGATGCACTTCCTGATGTTCTACGCCTTCTTCCACTCGG TGTGCCTCGGCTGCGCGGAGCTTTACGGGTATCCGGATCGGAACACCTAC GGTGAGCTCTCGTTCTCATTGGTCGGCGACCGATTCACCCCTAGTACGGG TCTAGTAGGACAAGCACCACGGCATGACCCGTGGCTTCGGGAGTGCTCAG GGGTCCGTACTTTTTTCTCTGCATGTGACAAGTGTCGCACCACAAACCAC AAACGCTTGTCAGGGACGACGCCCTGGTCGAGGAGGAAGCTCCATGCGTC GCTGCCTTTCCCAAGAGTATCGTTTCGGATGCACTCTGCGTCACTTGATG CGAGCACCGTTCCCTCCCGGAATTCGCGGTGCCTGACCCCTCCGGTGTCG TACGTTTCTCCTGAACACAGGCATTCGCGTGATGGCTGTTGCATCCAGGG CGAGTGTACACGACTTCCCGCTTGTCGGAGCTACTGCATGCTATACATTC CACCACCCTTTTTCGTAGAAATGGTACAGTTGAAAATGACACTACCGCCG GCTGTTGTAACGCACCAGAGTTGCCAAACCATGGTGACTTTTGTCCGTTT CGCAACCTCCTTCAGGCCCCTGGTGGCTGGTTGTAGACGATGTCCGCGAC TACTTTCGCCTCTGGTCGGCGCCCGTGCACCGGTGGCTGTCGGAGAGCGT CCAGCGTCCGATGATCGAGGTCGGACAGCGGGAGGCACTCCGCCGCCGTC GCAGCCGTGTTGCCAGAGACGAGGACAATCCGCCCGCAACCCACGGCAAT AGCTGCGACTCGAATGGCGTCCATGACGATCGGCCGAAAGGGACTCCGCC GACCACTGGGTGAGAGTGGGGGCTTCGAAATCTAATCCTCTCTTTGTCAT AATCTTGTTTCTTCGGGTGGGTGGGTTCCTTTTAATGGTTGTGCGCTTGC TAAAAGGTACCGTCGAATATGGTATCGGTCCCGGGGTTTCTTCGACGAAG ATTTTGGTGACATTCGACCGGAGACAGGCACCTTCTTCCCGTACGATTGG GGTCGAACAAGCTTCAGCTACGGTGCTGTGCTACTTGAAAAAACGACGAC TTGACCTCGCTAGTCCCTTGTTTCAGGTAGAAATGAGTGTGCGGGGTTTT GAGAGGTAAAACCATGGTTGTTTCTTCTTTGGTTTGTGCTGAGTGACTCT TGAAGCCATAATCGATGGTATCCTAGTCTAATGCCCCTCTGCATCGATGT AATTGCTGTCATGTGAGGGTGTAGGGGCCGTTTCGACCAGGGGCTGTTTC AACCATCCACGTTTCGATAGCATTGTCGAAACCCTCGGTCTAAGTGTCTC TGCGCTCGATTACCCAACTTATTGGGAAAAAACAGGGGCAAGGCTCGGCA CGGTGCTGAAGCGGGCATAGTGACGCGGTGGTGGCTGGCTTCGGTCGTGT GCTCGTTCCTCGTGTCGGGCGTAGTGCACGAGGCCGTCGGGTTCGTGGCC ATGCGGCGCACGGTTTGGCCGTTCAGCACCTTCTTCCTCGCTGTCACCGC GTCCATGGCGCCCTTCTGGGACACGCTGTTCCCTGTTGCGGCGGACACCA GCACCCCCGGCACACGGCCTACGGGCAGGCGTGCGTTCACATCCATTGCC GCTGCTGGCGGTGAAGGTGGTGGATTCTCGGCCGAAACGGAAGCGGCGAA TTCTGCAGCAGTGCCCAGCACGCTCGCGAGACCGACCAACGCGAAAGGCA CAGTCAACAAGTGTAGCGGGAATGATTTTGGCGCTGAGAACGAGGAGGCC CCCGATGGCCAGCACACGGGCCACCCTTCGAAGGATGTCGCAAACAATAA CGGGGTTGTGACTGGGCAGCAGGGGAATGAGGCCCCACGCTTGGGAAGGA AAGGAGCTCCCCGGCCTAAGATTGGCCGCCGGAGAGGTTGGGCAGCTGTC GTAGTCTACGGTGGGATGTACATGCCCTTAGCTTTGGTTGTGGACTATTG TGTATGGCAGTGGTGGCGACACACCCATATGGCCGAGTGATTTTGTGACA AAGTGTAGGAGCTGCGGGAGTCCTGCGACCTAGCTCTCGAGCAACGTTGC TGTATGTACAAACCGGAGTGCCTCATGGATCGCGGAAGCGAATGTGTTCG GTGAATGGGATTGTCGGTAGTGAGTGATTGGTTCCATTGTGACTATAAAT GTTCGAGTGTCCGATGAGCAACTAGACTAAATTCTATGTTGTACATAGAT TGTTGTATTCCCGAGCTACTCGTTCTTGCTATGCAGGCTATGCAGACCAC AACGGTTGGTAGGTCTACGAGCGAACGCAGATTGAGCAAAAGTCAAAACG CCCCAAGGAGAGGTATACAATTTGCCAACAACCAGCCGGCAAGGACCTGC CGATCATAGTGTCGTAGTGCCACAAGAAGGTCGAATTGATCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1817:10362..15155-

>mRNA_Ecto-sp13_S_contig1817.5618.1 ID=mRNA_Ecto-sp13_S_contig1817.5618.1|Name=mRNA_Ecto-sp13_S_contig1817.5618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1938bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1817:10362..15155- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGACAGTAACGTCGTTCTTGGTGTACCCCATCTACCAGCGGGGTTC
TCCGGCGGCCATTCAGAATCCCAGAGCCCCTTCGTGCCGGCGAGTTTCTA
TCGCAACAACAAAGACGATCGCCGCCGCCGTCCCGTCGATGGCCGTGTGG
GCCATCGCGGTGTACGTGGCCGGGGTTTGCCGCTGGGGCGTCGCTTCGGG
GCTATGCGTCGGCCTGCAGTGCGCCGCTCTTACGCTCAAGTCGGTGTCGT
TCGTGCAGAAGGCTCGCCCTGTCGCCGCTGAAGCAGCGATCGCCGTGGCG
GCGGCGCATGAAGACCTTGATGCGGCAGGGGTGGCAACAAACGCAGACGG
GGGCGACCGCGCAGCGGCTGCGAGCGGAAAGTTAGCAATATCTCCTGCAC
GTAGAAGTGTTCCTCGAGGGGATCCGAGGTCAAATTCACCAAGCCCAACG
GCGAGCGGCGACGACGGTGGCGCCCGCGCGGCCGACCCCGCCCTTACCTT
TCGAGAGTTCGCGTTCTTCCTCGTGCTGGCCCCGTCCCTGGTGTGTCGGC
CGCAGCACCTCGCGTCGGGGGCCCGAAGGCCGCCTCGCGTCGCCGCCGCT
GCCTCGGAGTTCTTGCACGCGGGTCTCACCTACATCGCGGTGCACGTGGC
CTGCTCGGCCCTGTTCGCCCCGGCGCTGCGCGTCCTGGCGGAAGCCCTGC
ACTCTGGGGGCGTCGCCGGCTGGGCGGACGAGGAAGACTGGGCGGAGTTG
CGCCGCACCGATGGCAGCGGGTGGTGGTTGCACGATAGTAGCGGGAGCCT
TGGCTCGCTCTTCGCGAGCGGCGGAGGAGGTTGCGTGGATGGGGGGGTTG
GTTGTGGCCCCGGGTGGACCTTTTCCGACGACGGGACGGGTCATCCGGGC
TTGACGGTGGCCATCGCCGCGTGTCTCGGTGTGTTCGTCTTCTCTCCGAT
GATGCACTTCCTGATGTTCTACGCCTTCTTCCACTCGGTGTGCCTCGGCT
GCGCGGAGCTTTACGGGTATCCGGATCGGAACACCTACGGCCCCTGGTGG
CTGGTTGTAGACGATGTCCGCGACTACTTTCGCCTCTGGTCGGCGCCCGT
GCACCGGTGGCTGTCGGAGAGCGTCCAGCGTCCGATGATCGAGGTCGGAC
AGCGGGAGGCACTCCGCCGCCGTCGCAGCCGTGTTGCCAGAGACGAGGAC
AATCCGCCCGCAACCCACGGCAATAGCTGCGACTCGAATGGCGTCCATGA
CGATCGGCCGAAAGGGACTCCGCCGACCACTGGGGGCAAGGCTCGGCACG
GTGCTGAAGCGGGCATAGTGACGCGGTGGTGGCTGGCTTCGGTCGTGTGC
TCGTTCCTCGTGTCGGGCGTAGTGCACGAGGCCGTCGGGTTCGTGGCCAT
GCGGCGCACGGTTTGGCCGTTCAGCACCTTCTTCCTCGCTGTCACCGCGT
CCATGGCGCCCTTCTGGGACACGCTGTTCCCTGTTGCGGCGGACACCAGC
ACCCCCGGCACACGGCCTACGGGCAGGCGTGCGTTCACATCCATTGCCGC
TGCTGGCGGTGAAGGTGGTGGATTCTCGGCCGAAACGGAAGCGGCGAATT
CTGCAGCAGTGCCCAGCACGCTCGCGAGACCGACCAACGCGAAAGGCACA
GTCAACAAGTGTAGCGGGAATGATTTTGGCGCTGAGAACGAGGAGGCCCC
CGATGGCCAGCACACGGGCCACCCTTCGAAGGATGTCGCAAACAATAACG
GGGTTGTGACTGGGCAGCAGGGGAATGAGGCCCCACGCTTGGGAAGGAAA
GGAGCTCCCCGGCCTAAGATTGGCCGCCGGAGAGGTTGGGCAGCTGTCGT
AGTCTACGGTGGGATGTACATGCCCTTAGCTTTGGTTGTGGACTATTGTG
TATGGCAGTGGTGGCGACACACCCATATGGCCGAGTGA
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