mRNA_Ecto-sp13_S_contig1817.5617.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1817.5617.1
Unique NamemRNA_Ecto-sp13_S_contig1817.5617.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Match: D7FQV7_ECTSI (Trafficking protein particle complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQV7_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 2.430e-129
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 2 
Query:  380 MDSAKRASAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLAREARLG 979
            MDSAKRASAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQR+KTVFLIKFDPEVLAREARLG
Sbjct:    1 MDSAKRASAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQREKTVFLIKFDPEVLAREARLG 200
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BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Match: W7TEN4_9STRA (Trafficking protein particle complex subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEN4_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.450e-78
Identity = 131/187 (70.05%), Postives = 157/187 (83.96%), Query Frame = 2 
Query:  416 HILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLAREARL 976
            +ILDR +   G+G   +EVSLSAFSFLFSEMVQY+Q+RV SIADLERKLEEAGYG+G RVLEL  FRE+  +R ++L+ +LQ+VSS VWKALF K ADSLERSTENEDEYMIHEREP+TN FVS PAD+ QLNCAA +AG+I+GVL+GAS+PA V+AH+V +  GQR+KTVFLIKF  +VL REA L
Sbjct:   19 NILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAAL 205
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BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Match: A0A6V1NSM5_HETAK (Trafficking protein particle complex subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NSM5_HETAK)

HSP 1 Score: 250 bits (638), Expect = 2.630e-76
Identity = 133/189 (70.37%), Postives = 154/189 (81.48%), Query Frame = 2 
Query:  416 HILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKG-QRDKTVFLIKFDPEVLAREARLG 979
            +ILDR +    K     EVSLSAFSFLFSEMVQY Q+RV SI+DLE++LEE GY +GLRVLEL   RER Q+RRVRLLP LQ+VS+NVWK LFGK ADSLERSTENEDEYMIHE EP+ N+F+SVP DLG LNCAA  AGV+AG LDGASFPARV+AH V +E G +R+KTVFL+KFD EV+ RE +LG
Sbjct:    6 NILDRPVPKINK-----EVSLSAFSFLFSEMVQYNQNRVMSISDLEKRLEEVGYRVGLRVLELLGHRERAQRRRVRLLPTLQFVSTNVWKYLFGKQADSLERSTENEDEYMIHEAEPLPNAFISVPPDLGHLNCAAFTAGVVAGALDGASFPARVTAHGVAVEGGPRREKTVFLVKFDREVVDREIKLG 189
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BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Match: A0A2D4CHI7_PYTIN (Trafficking protein particle complex subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHI7_PYTIN)

HSP 1 Score: 236 bits (602), Expect = 7.570e-71
Identity = 124/199 (62.31%), Postives = 153/199 (76.88%), Query Frame = 2 
Query:  380 MDSAKRASAPRT---HILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLARE 967
            MD A+R+    T   HILDR + + GKG    EVSLSAF+FLFSEMVQYFQ RV +I DLE +L++AG+G+G+RVLEL  FRE+  +R  RL+ MLQ++ S  W+ALFGK AD+LERSTENEDEYMIHE EP+TN F+SVP DLGQL+CAA +AG+I G+L    FPA+V+AH VE   GQRDKTVFL+KFD  V+ RE
Sbjct:    1 MDPARRSGLGATTKLHILDRPL-SRGKG----EVSLSAFAFLFSEMVQYFQGRVQNITDLETRLDDAGFGVGVRVLELLCFREKSGRRETRLINMLQFIVSTCWRALFGKAADALERSTENEDEYMIHELEPLTNKFISVPQDLGQLDCAAFIAGMIRGILTSGGFPAQVTAHAVETGAGQRDKTVFLVKFDEVVIRRE 194
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BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Match: A0A836CAJ0_9STRA (Transport protein particle component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ0_9STRA)

HSP 1 Score: 236 bits (603), Expect = 1.600e-70
Identity = 133/228 (58.33%), Postives = 156/228 (68.42%), Query Frame = 2 
Query:  398 ASAPRTHILDRQIVAAGK-------------------------GGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRER-LQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEK---------GQRDKTVFLIKFDPEVLAREARL 976
            A   R HILDR+I   G                          GG+  EVSLSAFSFL SEMVQ+ Q RVTSI  LER+LEEAGY +GLRVLELQ FR++ + KR+ RLL  LQWVS+++W+ALFGKTADSLERSTEN DEYMIHE +P+TN FVSVP DLGQLNCAA +AG+IAG LDGA FPA V+AH +E+           G R KTVFL+KF  EV+ REA+L
Sbjct:    3 APGQRLHILDRKIAVPGSSYAYPTTRDTRVGIVSASSNAYAAAGGRTTEVSLSAFSFLLSEMVQHVQARVTSIDALERRLEEAGYAVGLRVLELQQFRDKSVGKRKTRLLQALQWVSADMWRALFGKTADSLERSTENADEYMIHELQPITNVFVSVPPDLGQLNCAAYIAGIIAGALDGACFPATVTAHTIELAGQEANITAAGGPRCKTVFLVKFSEEVMRREAQL 230
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BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Match: A0A5D6XYF3_9STRA (Trafficking protein particle complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYF3_9STRA)

HSP 1 Score: 234 bits (598), Expect = 2.850e-70
Identity = 121/192 (63.02%), Postives = 150/192 (78.12%), Query Frame = 2 
Query:  401 SAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLAREARL 976
            +A + HILDR +      GK +EVSLSAF+FLFSEMVQYFQ RV +I+DLE +L++AG+G+G+RV+EL   RE+  +R  RL+ MLQ++ S  WKALFGK AD+LERSTENEDEYMIHE EP+TN F+SVP DLGQL+CAA +AGV+ GVL  + FPA+VSAH VE   GQRDKTVFL+KFD  V+ RE  L
Sbjct:   10 AATKLHILDRPL----SRGK-SEVSLSAFAFLFSEMVQYFQSRVQNISDLESRLDDAGFGVGVRVIELLCHREKPGRRETRLINMLQFIVSTCWKALFGKPADALERSTENEDEYMIHELEPLTNKFISVPPDLGQLDCAAYIAGVVRGVLTSSGFPAQVSAHAVEAATGQRDKTVFLVKFDESVMRRERTL 196
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BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Match: A0A8K1FTE9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FTE9_PYTOL)

HSP 1 Score: 225 bits (574), Expect = 1.020e-66
Identity = 118/189 (62.43%), Postives = 145/189 (76.72%), Query Frame = 2 
Query:  410 RTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLAREARL 976
            + HILDR + + GK     EVSLSAF+FLFSEMVQYFQ RV +I DLE +L++AG+G+G+R+ EL   RE+  +R  RL+ MLQ+V S  WKALFGK AD+LERSTENEDEYMIHE EP+TN F+SVP DLGQL+CAA +AG+I G+L    FPA+V+AH VE   GQRDKTVFL+KFD  V+ RE  L
Sbjct:   14 KLHILDRPL-SRGKN----EVSLSAFAFLFSEMVQYFQGRVQNINDLETRLDDAGFGVGVRIQELLCQREKAGRRETRLINMLQFVVSTCWKALFGKAADALERSTENEDEYMIHEVEPLTNKFISVPPDLGQLDCAAYIAGMIRGILTSGGFPAQVTAHAVEAGNGQRDKTVFLVKFDEVVMRRERVL 197
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BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Match: M4BVJ4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVJ4_HYAAE)

HSP 1 Score: 226 bits (576), Expect = 9.730e-66
Identity = 118/199 (59.30%), Postives = 150/199 (75.38%), Query Frame = 2 
Query:  380 MDSAKRASAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLAREARL 976
            M+  +  S    HILDR +      GK +EVSLS FSFLFSEMVQYFQ RV +I+DLE +L+ AG+G+G+RVLE+   RE+  +R +RLL MLQ++ SN WKALFGK AD+LERSTENE+EYMIHE EP+TN FVSVP DLGQL+CAA +AG++ G+L  + F A V+AH VE+  GQR+KTVFL+KF+  V+ RE  L
Sbjct:   96 MEGGRGVSTTNLHILDRPL----SRGK-SEVSLSVFSFLFSEMVQYFQGRVQNISDLENRLDIAGFGVGVRVLEILGHREKSGRREIRLLAMLQFIVSNCWKALFGKAADALERSTENENEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLADVTAHTVEVPGGQRNKTVFLVKFNESVIHRERVL 289
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BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Match: K3XAK0_GLOUD (Trafficking protein particle complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAK0_GLOUD)

HSP 1 Score: 220 bits (561), Expect = 1.310e-64
Identity = 118/202 (58.42%), Postives = 147/202 (72.77%), Query Frame = 2 
Query:  401 SAPRTHILDR---------QIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEM-EKGQRDKTVFLIKFDPEVLAREARL 976
            +A + HILDR          ++A  +      VSLSAFSFLFSEMVQYFQ RV +I+DLE +L++AG+G+G+RV EL   RE+  +R  RL+ +LQ++ S  WKALFGK AD+LERSTENEDEYMIHE EP+TN F+SVP DLGQL+CAA +AG+I GVL  + F A V+AH VE+   GQRDKTVFLIKFD  V+ RE  L
Sbjct:   10 TATKLHILDRPLSRGKNEVHVLALMRHTHTQSVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDDAGFGVGVRVGELLCHREKSGRRETRLISILQFIVSTCWKALFGKAADALERSTENEDEYMIHELEPLTNKFISVPPDLGQLDCAAYIAGIIRGVLTSSGFTANVTAHTVEVGTPGQRDKTVFLIKFDERVMRRERVL 211
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BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Match: H3G9X2_PHYRM (Trafficking protein particle complex subunit n=26 Tax=Peronosporaceae TaxID=4777 RepID=H3G9X2_PHYRM)

HSP 1 Score: 218 bits (556), Expect = 2.950e-64
Identity = 110/171 (64.33%), Postives = 136/171 (79.53%), Query Frame = 2 
Query:  464 AEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLAREARL 976
            +EVSLSAFSFLFSEMVQYFQ RV +I+DLE +L+ AG+G+G+RV+EL   RE+  +R  RLL MLQ++ S  WKALFGK AD+LERSTENE EYMIHE EP+TN FVSVP DLGQL+CAA +AG++ G+L  + + A V+AH VE+  GQRDKTVFL+KFD  V+ RE  L
Sbjct:   14 SEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLAMLQFIVSTCWKALFGKAADALERSTENEYEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGYLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRERVL 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1817.5617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQV7_ECTSI2.430e-12999.50Trafficking protein particle complex subunit n=2 T... [more]
W7TEN4_9STRA1.450e-7870.05Trafficking protein particle complex subunit n=2 T... [more]
A0A6V1NSM5_HETAK2.630e-7670.37Trafficking protein particle complex subunit n=1 T... [more]
A0A2D4CHI7_PYTIN7.570e-7162.31Trafficking protein particle complex subunit n=1 T... [more]
A0A836CAJ0_9STRA1.600e-7058.33Transport protein particle component n=1 Tax=Tribo... [more]
A0A5D6XYF3_9STRA2.850e-7063.02Trafficking protein particle complex subunit n=1 T... [more]
A0A8K1FTE9_PYTOL1.020e-6662.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BVJ4_HYAAE9.730e-6659.30Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
K3XAK0_GLOUD1.310e-6458.42Trafficking protein particle complex subunit n=1 T... [more]
H3G9X2_PHYRM2.950e-6464.33Trafficking protein particle complex subunit n=26 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1817contigEcto-sp13_S_contig1817:6219..10320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score387.1
Seed ortholog evalue5e-105
Seed eggNOG ortholog2880.D7FQV7
Preferred nameTRAPPC5
Model size1841
KEGG koko:K02332,ko:K10840,ko:K20280
KEGG Pathwayko01100,ko03420,ko04139,map01100,map03420,map04139
KEGG ModuleM00294
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005793,GO:0005794,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022607,GO:0030008,GO:0031267,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0051020,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090114,GO:0097708,GO:0098772,GO:0099023,GO:1990070,GO:1990071,GO:1990072
Exons6
EggNOG free text desc.Golgi vesicle transport
EggNOG OGsCOG5128@1,KOG3315@2759
Ec32 ortholog descriptionTransport protein particle component (TRAPP)/ SPP30-like
Ec32 orthologEc-02_003050.1
EC2.7.7.7
Cds size603
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03032,ko03036,ko03400,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1817.5617.1prot_Ecto-sp13_S_contig1817.5617.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1817 6598..9461 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462937.96369-UTR-Ecto-sp13_S_contig1817:6218..65971681462937.96369-UTR-Ecto-sp13_S_contig1817:6218..6597Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1817 6219..6597 +
1681462938.032908-UTR-Ecto-sp13_S_contig1817:9461..103201681462938.032908-UTR-Ecto-sp13_S_contig1817:9461..10320Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1817 9462..10320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462937.9770744-CDS-Ecto-sp13_S_contig1817:6597..66871681462937.9770744-CDS-Ecto-sp13_S_contig1817:6597..6687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1817 6598..6687 +
1681462937.9851713-CDS-Ecto-sp13_S_contig1817:7230..73191681462937.9851713-CDS-Ecto-sp13_S_contig1817:7230..7319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1817 7231..7319 +
1681462937.993285-CDS-Ecto-sp13_S_contig1817:7793..79201681462937.993285-CDS-Ecto-sp13_S_contig1817:7793..7920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1817 7794..7920 +
1681462938.0013723-CDS-Ecto-sp13_S_contig1817:8424..85021681462938.0013723-CDS-Ecto-sp13_S_contig1817:8424..8502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1817 8425..8502 +
1681462938.0096507-CDS-Ecto-sp13_S_contig1817:8777..88821681462938.0096507-CDS-Ecto-sp13_S_contig1817:8777..8882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1817 8778..8882 +
1681462938.020819-CDS-Ecto-sp13_S_contig1817:9347..94611681462938.020819-CDS-Ecto-sp13_S_contig1817:9347..9461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1817 9348..9461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1817.5617.1

>prot_Ecto-sp13_S_contig1817.5617.1 ID=prot_Ecto-sp13_S_contig1817.5617.1|Name=mRNA_Ecto-sp13_S_contig1817.5617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
MDSAKRASAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDR
VTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNV
WKALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALV
AGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLAREARLG
*
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mRNA from alignment at Ecto-sp13_S_contig1817:6219..10320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1817.5617.1 ID=mRNA_Ecto-sp13_S_contig1817.5617.1|Name=mRNA_Ecto-sp13_S_contig1817.5617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1817:6219..10320+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGGCACCTTTGATTGCTGCCAGAGCGTCAACGTTACAACGACACACGC
TGCCATCCCGACCATTCTACGCTTCTATATCTAGGGAGAATAGTGGTGGT
GAAACGAATCTGGCAAGGGTCGAACCTGCCAACGCACTCCTGGTCCTTGG
AGTTGGTACGCTGGAGCGCTTTCTCTCCTGAGGAACAACGCATCACGCAT
CGGCGAAGCGTTGGCGGCTCTCCAGCAGCAGCGGCAGCGACAGACGTTCC
GAGACTATCGAGCGTAGAATTGCTTCAGGTTTGCTGCGTGGGGTAGGAGC
GACGTAACCAACCTCTCCTGATTCCCGCAATCTCTAAGCTCCTCCCTGTC
AGCATTAGGGGACCGGGAGAACAACGACGATGGATTCGGCCAAAAGAGCA
AGTGCTCCACGGACACATATCCTGGATCGCCAGATCGTGGCAGCAGGAAA
GGGCGGAAAGCCGGCGGAGGTGCGCCAAAGCTGAACAGCATGTGCTGCAC
AAGATGCGAATTGCTGAATTTGTTCTTCCTGCTGTTTAGTATTATTTGCT
GACTTGGTGACTGCTCGCACATTTGGTAAACCCGCAGGTGTATTTCTTTG
AGAGTCGGGAGAGTCGGTTAAGGCCTGGCGAGTGTTTGAGGGTTTTGGAT
CCTGACGGTGGTGCAATTCCCTCGTTGATCTCTCCCCTCTGGGCATGCAT
GACTTTTGGCGGGGTGGTGCATCTGCGTGCATATGAAGTTGCCTTTTGGC
CTCATCTCTCGGCTCGCGGTGAGCACACCGGTTGGATTCTTTACAGCTTT
GCAATCCGCATCAACAGATCCTGACACCACTCAACGGTGCTGTGCATGAC
ACGACCCAATCCGTACATGATGAGCACCACTCCACAACACTTTCGCTAGC
TCGCCCCGTGCAACGTCACCTTATTCGGACCCACCTCTTAGGTACCTAGA
GTATTGTGCCAGATCGTCCCACGAATCTGAACCGTCTGCATGTTTTTATT
CGCCTGAAACAGGTGAGCCTGAGCGCCTTCAGCTTCCTCTTTTCGGAGAT
GGTTCAGTACTTCCAAGATCGAGTCACGAGCATCGCCGACCTGGAGCGCA
AGTGAGACGCGAACCCTTACCGACTTGATCACCCACGAGTGCCGGAGTTG
TCATCACGGACCGCATACTGGGCTGAGCCAACCAAAGAGGATTGGCGGAG
GGGCAGGGGGGGCAAAGGCTGTAGGCGACGCGTACCTCTACAGCAGTAAC
GGCTGACTTCAACGAACATCAACAGCTGTGTTCGTGTGTGGTAACTTGGC
GCAAGAGTTGAGGGGATGTTCGCTTGGTGGCCCGACAGGGGCCCGGCGGA
GAGCTGGTTCATTGCTGCAGAGATAGTTCCCTCGTAACGCTCCCATGAAG
ATGCGTGTAAGCCCGCGCGGGTCACTTCGGTCCATCTACCAAGGAGCTTT
GGAACAAGATCCCCCAACCTTTTTTCGTGGCGTGTCGCACAGAACAAGTC
CGAGTGCCGTCGGACAACATGTCCATCTCCACCGCAATGGTTTTTATCTT
ATTATCGTTGGGCGATTGCGTGCAGGCTTGAGGAGGCAGGGTACGGCATG
GGCCTCCGCGTGCTGGAGCTGCAGACTTTCCGCGAGAGACTGCAGAAGCG
AAGAGTCCGCCTCCTGCCCATGCTGCAATGGGTTTCCTCCAATGTTTGGA
AGGCGAGTCGTGGTTGTGGGGCCTCTCACCATTTTTTGTCGTCTTGCAAG
TAATCCCAGGATCCACGAGTGCCTAGTATTGTGATATCTGCTCTCGGCGA
ACTAGCGCGCGTCCTACCTACACAACCGGTGACGGCGACGGATTCTCCCG
CAACGCTGTGTGCGCAAACTACTATTTATATCGCTCATTCGCACACCAAA
TGCATGTCAGTCCACTCGCACCCTCGCTGCTGTCATCCGTCTTTCTCTTT
ACCGACAATTCATATTCTTCACCTATCCCACCAAGCATGTACAACCCTCT
GTCTCACGGTGGGTTGCGGCAGCGATTGCGCCTAAAATATAGCGGGAGAC
GCACTTTGATGCCTCGCGGTGCGCGCCTCCGGAGACCTCACCCACCGCTG
AACGAAGGCGTTTCAGCCGACCGAGGGTGTGGTGTTGCTGTCACATCCGC
AGCACGGACATGATGCGTTTGGAAACTCACTTGTCTGAACATGCGCGTCT
TCTCAGGCATTATTCGGCAAGACGGCCGATTCTCTGGAGAGGAGTACGGA
AAACGAGGACGAGTACATGATTCACGAAAGAGAGGTAATGGTGAACGCTT
TGGAAACGTATACATATTGGTCAAGAGTTTTCCTGATAGCTTGCACCTGT
CGTCACGCCTGCCTATTACGAAATTTTCAGGGCAACATCCACGCGCAACA
TTTTCAAGTACCCCCCCCCTCATGTGGGAGCAATGCTCCGTCCTTTCGAG
AACGCGTGGTCAATGGCCTAAGAGTTTAGGCATGCACAGCGTGAGTACGC
ACCCCCCCATCCCATCACTTCGCGCCGGCGTCCTCGCCGCTCGTTGTCGT
TTTCGCCAGCCCATGACCAACAGTTTCGTGAGCGTGCCTGCCGACCTGGG
GCAGTTGAATTGCGCCGCTCTCGTGGCGGGTGTGATCGCCGGAGTCTTGG
ACGGAGCCTCGTTCGTGAGTACCGCATGTGGTCTCGGCCTGCTTGGTTTG
TTCACGCAGAGGCGCACGGTTGTGTTTTTGGTCGGTTTGCGTCCGATCCT
GATTCAGGCCGAGGCGATTGTACCGAGTCTTGGAGGACCACGCCTTTTTT
CGCCCGTTGTTGGGCTCGTGTCGGGTGTGGTGAATTTTCTCCTTATCTAG
ACCCGTGTAAATCTGCCGGGACCGTGTAAATCTGCCGGGAGGTATTCCGT
CTTATCGTCGCGGCTTGGCGTGATGTCTCCGTGATTTCATTTCCATGCAG
CACGAGAGATGAATCTTGAACGTAGGGTGCTTTTTTCATGTGTCGGTATT
TTCATAAAACACGCGACGGCGGTTTCTTGGAGATTGTCTCGCGATCGTTG
AATGTCATCGACAGCCCTGCCGTCACCCCCGCCCCGCCCTCCCTGCCATG
CCTCTCTACCCCCGTGTCGTGATTTTTAGCCTGCGCGGGTCTCCGCACAC
AACGTGGAGATGGAGAAGGGGCAGCGAGATAAGACGGTATTTTTGATCAA
GTTTGATCCCGAGGTTTTGGCTAGGGAAGCCAGGTTAGGATAAGATAAAC
CACGAGATGGTCAACGGGTCGAATGGATGAGCGTGGGGGGCGAGGCTTTG
TGGTGAAGATGAAGTTGAGTTGTTGTGTGTGTGTTTCGAAGTGTCAAGGA
TGCCCTGGACTATCCTTGTATTTCCCAGTAGAGGTCTAGCGCACTTTCCC
ACGGGTGTATTCGTACCCCAAGGCCAAGCTCGAATGCTCCTTTAGTCGAT
AATTTCAATCTTCCCGGGTGATGCACATTTTCAGCGCACAACGCGACGAA
TCGATACTTGCTGTAGTCGCATGAAAGTGAAAACGGTGGGGTTTTGTAGG
CGCCATGTGTAGTGTGCGATTAGCATGTTGCAAGTGGGTCGATTTTCCAC
TGTTCATGCCATGTTTTCTCATGCATTGTTTTTTTGAGAAGGCACATGCA
CAGGCAGCGCGTATTGAAACAGCGACACTACACTCAGGCACATCGGAAAA
AACGGTTGGGGCCACGCATACGCAGTTGTTAGGAAACGCTGAGGACGTCG
TCGATATATGTGGAGTACGTCCGCAAGGGGATCAGTTCTATCCAGCTGCT
TCCGCGGGGATGCCACACGGCACTGTCACGTGTATTTTGACAGATGGGAG
GGACGTAAACGAATCGTTCCGACCTTCGTTGCATACAAAGTAGCGAGAGT
AACCTATCGACGCCCGCCCGCATGTAAATGCTAATTTCCATGGATTGGAT
ACCGATAGGGGTAACTGCTGCAAGCGGTTTGGACGACCTGCCGAAGTTTC
GGGGATATAGATTGGGCACCGCCAAACCATTGAAGTGTAGAGCGGAAAAG
AAGTCCACGCTAGAAAGTACGGGCTTGATTGCGAGGCTCATGTTTTTGCC
AA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1817:6219..10320+

>mRNA_Ecto-sp13_S_contig1817.5617.1 ID=mRNA_Ecto-sp13_S_contig1817.5617.1|Name=mRNA_Ecto-sp13_S_contig1817.5617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1817:6219..10320+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTCGGCCAAAAGAGCAAGTGCTCCACGGACACATATCCTGGATCG
CCAGATCGTGGCAGCAGGAAAGGGCGGAAAGCCGGCGGAGGTGAGCCTGA
GCGCCTTCAGCTTCCTCTTTTCGGAGATGGTTCAGTACTTCCAAGATCGA
GTCACGAGCATCGCCGACCTGGAGCGCAAGCTTGAGGAGGCAGGGTACGG
CATGGGCCTCCGCGTGCTGGAGCTGCAGACTTTCCGCGAGAGACTGCAGA
AGCGAAGAGTCCGCCTCCTGCCCATGCTGCAATGGGTTTCCTCCAATGTT
TGGAAGGCATTATTCGGCAAGACGGCCGATTCTCTGGAGAGGAGTACGGA
AAACGAGGACGAGTACATGATTCACGAAAGAGAGCCCATGACCAACAGTT
TCGTGAGCGTGCCTGCCGACCTGGGGCAGTTGAATTGCGCCGCTCTCGTG
GCGGGTGTGATCGCCGGAGTCTTGGACGGAGCCTCGTTCCCTGCGCGGGT
CTCCGCACACAACGTGGAGATGGAGAAGGGGCAGCGAGATAAGACGGTAT
TTTTGATCAAGTTTGATCCCGAGGTTTTGGCTAGGGAAGCCAGGTTAGGA
TAA
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