prot_Ecto-sp13_S_contig18168.5614.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18168.5614.1
Unique Nameprot_Ecto-sp13_S_contig18168.5614.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length95
Homology
BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 6.320e-52
Identity = 84/94 (89.36%), Postives = 86/94 (91.49%), Query Frame = 0
Query:    2 VSALVRAAVRRPAAXXXXXXRRSMSGDAAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLDT 95
            VSALVRAAVRRPAA      RRSMSGDAAHAAEEMAKWKKMTAGM VLSLAVTTLVLATEEHHH DEDAP+PSYMKIRNKPHPWNCADCTLLD+
Sbjct:    2 VSALVRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDS 95          
BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: A0A7S3ZZW1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZW1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.050e-10
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 0
Query:   22 RRSMSGDAAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHH----HMDEDAPVPSYMKIRNKPHPWNCADCTLLD 94
            RR MSGDAA AA EMAKW K + G       ++T +   E  H    H  ED    S+MKIR KP+PW+C DC L +
Sbjct:   21 RRMMSGDAAEAAIEMAKWTKYSYGAIAFCGVLSTYIGIVEYRHMMHPHEHEDIAY-SHMKIRAKPYPWDCPDCNLFE 96          
BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: A0A662YHV6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHV6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.400e-7
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 0
Query:   36 MAKWKKMTAGMAVL--SLAVTTLVLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLD 94
            M +W  ++ GM  L  +  V T +    EH H +E+ P   Y+K+RNKP PW+ +DC LLD
Sbjct:    1 MHRWNTISKGMIALVGAFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLD 61          
BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: A0A662YJ33_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ33_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.100e-7
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0
Query:   22 RRSMSGDAAHAAEEMAKWKKMTAGMAVLS--LAVTTLVLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLD 94
            R+  S     A E+M +W  ++ GM  L     V T +    EH H +E+ P   Y+K+RNKP PW+ +DC LLD
Sbjct:  168 RQMSSATETEAKEQMHRWNTISKGMIALVGVFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLD 242          
BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: A0A7S2G097_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G097_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.560e-7
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 0
Query:   23 RSMSGD--AAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLD 94
            R+MSG      A  +M  W K++  +A+  ++V  +V+   E  H   +AP  S+ KIR KP+PW C+DCTL D
Sbjct:   22 RAMSGGHCPVQAEADMNNWIKISV-VAIGGVSVAGVVIGYLESQHHHHEAPPRSFKKIRAKPYPWECSDCTLFD 94          
BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: A0A5D6XZ58_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ58_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.120e-6
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 0
Query:   26 SGDAAHAAEEMAKWKKMTAGMAVLSLAVTTL-VLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLDT 95
            S   A A ++M +W +++ GM  L+  +T   V+A    H   E+AP  +Y+K+RNKP PW  + C LLD+
Sbjct:    3 SATEAEAKDQMIRWTQISKGMIGLTTLLTAYNVVAHFGGHEHHEEAPSYAYLKLRNKPFPWEYSGCDLLDS 73          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FHU0_ECTSI6.320e-5289.36Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A7S3ZZW1_9STRA1.050e-1046.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662YHV6_9STRA1.400e-740.98Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662YJ33_9STRA2.100e-738.67Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S2G097_9STRA5.560e-739.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5D6XZ58_9STRA1.120e-638.03Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10coord: 24..93
e-value: 2.5E-9
score: 39.0
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 27..92
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 9..94
NoneNo IPR availablePANTHERPTHR11504:SF0CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIALcoord: 9..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18168contigEcto-sp13_S_contig18168:1..1897 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18168.5614.1mRNA_Ecto-sp13_S_contig18168.5614.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18168 1..1897 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18168.5614.1 ID=prot_Ecto-sp13_S_contig18168.5614.1|Name=mRNA_Ecto-sp13_S_contig18168.5614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
QVSALVRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMAVLS
LAVTTLVLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLDT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf
IPR001349Cyt_c_oxidase_su6a