mRNA_Ecto-sp13_S_contig18168.5614.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18168.5614.1
Unique NamemRNA_Ecto-sp13_S_contig18168.5614.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 6.320e-52
Identity = 84/94 (89.36%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:    4 VSALVRAAVRRPAAXXXXXXRRSMSGDAAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLDT 285
            VSALVRAAVRRPAA      RRSMSGDAAHAAEEMAKWKKMTAGM VLSLAVTTLVLATEEHHH DEDAP+PSYMKIRNKPHPWNCADCTLLD+
Sbjct:    2 VSALVRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDS 95
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BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: A0A7S3ZZW1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZW1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.050e-10
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   64 RRSMSGDAAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHH----HMDEDAPVPSYMKIRNKPHPWNCADCTLLD 282
            RR MSGDAA AA EMAKW K + G       ++T +   E  H    H  ED    S+MKIR KP+PW+C DC L +
Sbjct:   21 RRMMSGDAAEAAIEMAKWTKYSYGAIAFCGVLSTYIGIVEYRHMMHPHEHEDIAY-SHMKIRAKPYPWDCPDCNLFE 96
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BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: A0A662YHV6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHV6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.400e-7
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:  106 MAKWKKMTAGMAVL--SLAVTTLVLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLD 282
            M +W  ++ GM  L  +  V T +    EH H +E+ P   Y+K+RNKP PW+ +DC LLD
Sbjct:    1 MHRWNTISKGMIALVGAFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLD 61
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BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: A0A662YJ33_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ33_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.100e-7
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:   64 RRSMSGDAAHAAEEMAKWKKMTAGMAVLS--LAVTTLVLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLD 282
            R+  S     A E+M +W  ++ GM  L     V T +    EH H +E+ P   Y+K+RNKP PW+ +DC LLD
Sbjct:  168 RQMSSATETEAKEQMHRWNTISKGMIALVGVFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLD 242
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BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: A0A7S2G097_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G097_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.560e-7
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   67 RSMSGD--AAHAAEEMAKWKKMTAGMAVLSLAVTTLVLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLD 282
            R+MSG      A  +M  W K++  +A+  ++V  +V+   E  H   +AP  S+ KIR KP+PW C+DCTL D
Sbjct:   22 RAMSGGHCPVQAEADMNNWIKISV-VAIGGVSVAGVVIGYLESQHHHHEAPPRSFKKIRAKPYPWECSDCTLFD 94
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BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Match: A0A5D6XZ58_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ58_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.120e-6
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:   76 SGDAAHAAEEMAKWKKMTAGMAVLSLAVTTL-VLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLDT 285
            S   A A ++M +W +++ GM  L+  +T   V+A    H   E+AP  +Y+K+RNKP PW  + C LLD+
Sbjct:    3 SATEAEAKDQMIRWTQISKGMIGLTTLLTAYNVVAHFGGHEHHEEAPSYAYLKLRNKPFPWEYSGCDLLDS 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18168.5614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FHU0_ECTSI6.320e-5289.36Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A7S3ZZW1_9STRA1.050e-1046.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662YHV6_9STRA1.400e-740.98Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662YJ33_9STRA2.100e-738.67Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S2G097_9STRA5.560e-739.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5D6XZ58_9STRA1.120e-638.03Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18168contigEcto-sp13_S_contig18168:1..1897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score167.2
Seed ortholog evalue3.8e-39
Seed eggNOG ortholog2880.D7FHU0
Model size285
KEGG koko:K02266
KEGG TC3.D.4.11,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG OGs2BY4U@1,2SBT1@2759
Ec32 ortholog descriptioncytochrome c oxidase subunit VIa
Ec32 orthologEc-07_006760.1
Cds size285
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462937.7306328-CDS-Ecto-sp13_S_contig18168:0..691681462937.7306328-CDS-Ecto-sp13_S_contig18168:0..69Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18168 1..69 -
1681462937.7419858-CDS-Ecto-sp13_S_contig18168:988..11041681462937.7419858-CDS-Ecto-sp13_S_contig18168:988..1104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18168 989..1104 -
1681462937.752797-CDS-Ecto-sp13_S_contig18168:1797..18971681462937.752797-CDS-Ecto-sp13_S_contig18168:1797..1897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18168 1798..1897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18168.5614.1prot_Ecto-sp13_S_contig18168.5614.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18168 1..1897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18168.5614.1

>prot_Ecto-sp13_S_contig18168.5614.1 ID=prot_Ecto-sp13_S_contig18168.5614.1|Name=mRNA_Ecto-sp13_S_contig18168.5614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
QVSALVRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMAVLS
LAVTTLVLATEEHHHMDEDAPVPSYMKIRNKPHPWNCADCTLLDT
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mRNA from alignment at Ecto-sp13_S_contig18168:1..1897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18168.5614.1 ID=mRNA_Ecto-sp13_S_contig18168.5614.1|Name=mRNA_Ecto-sp13_S_contig18168.5614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1897bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18168:1..1897- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTTCTGCGCTTGTGAGGGCGGCGGTGCGGCGGCCGGCGGCAGCGGC
GGCTTCTTCGGCCCGTCGCAGCATGAGCGGCGACGCCGCACACGCAGCCG
GTGAGCCGATGAGCAAGCACCGCTTGTAATGGAACGTGGACTCTATTATT
GTTCGTGTGGTATTGTAGTTGGTGGTGGTGCTGTTGTCTTTGTTATTCTG
CTGTAGAAGTTGTTCTTGTTGTTAGCGTGGGTGGCGTGGCAACGAGGAGG
GATGTCGACGGCGATGCGGGTAAGTGAGGTCGGGCGCTCTACCCCTTCAC
CACTGCACGAGCCTTCATTCTCGAGCGAAAAACTAACACACGACTTCTTC
CTCTCTTCAGGCCCGCCGTTACGCTTGGCCTTGAATACAAGTCAAAACTT
GCGCAAGTCGGGGAACGGCAGTAAAGAAAACCGCACCCGACGTATCGAGC
ATTTAAGCGGCTTATGCGGAAGATGAGTCAATCAAGCCACATTCATGCTC
TTCCTTTCTCCCTCTTTTTTTCCCCTTTCTTTCTTATGCCCCCGCGCTTT
TTTTTTTTTTTCATGTGTCAGACTGCAAGGACCAGAAATTAGAAATTTGC
TCAAGATCCTTGCTGGAGATCCTCAACAACCATGCCGCTAAGTAGCACCC
GAATGGAAATCGGGTTTTTCCCCTATGTTGCGAGAAGCCGCAATCGAAAG
CACGCGTGATCAGCCGATAATCCAAGCAACCAATGCCCCCCCTTCTCTGG
CATTTTTTCCGAACCCTGCGGCATTGCGTGCGTGCCGAAACAGAGGAGAT
GGCCAAGTGGAAAAAGATGACGGCCGGTATGGCGGTTTTGAGCTTGGCCG
TGACCACCCTGGTGCTGGCCACCGAAGAGCACCACCACATGGACGAAGAT
GCCCCCGTTGTAAGACAACCTCACTTTTGTTCTTCTCTCTTGGCTTGTGG
GTATGCTACGCAGAAGTGCAACACTTGAGCTCTCATGGTGTGCTACGGAA
GAGTGCAATACTGAGCTTCCATCCGGACACGGAAGTTTGTACGCTCTTCA
CACGGTAATGAGATACGAAAATATTGTTTTGGTACTTACTGGGAAGTATT
TTGGTGTATTGCAGGAATTTTTTTTTCGTGTTTTTGATACAGTGGCACAG
GTTACGGCCATCTTGGTGACACAAGACTATAAACGAAGTTTGAAACAGGA
GGATTGCACACACGAATATGCCCCTCTTATCTATCTATGCATACCCCTTG
TCATTTTTGGGGGGGTGAGTCTTGCGTTTCACTCCTCTTTTGTGAAACCA
GTACATCAGGCCGCATGTCTGGTTTGAGCGAGTCTTGTTGTGCATGGCTT
CCGCGGGTGAATGTCGACGAAACATGGCATTTTCTGGCTGTCTTCAATGA
AGCTCCCGTCGGCTTCTGTTGGTGGTGTCCCTGGACGCATTGAACGGGAT
ACAGCGGTCTGTTCCTCGCACTTTTCGTTAGCCTGGGAAAGCATGCGTGT
GCTTGGGCCTCGTGCGCGTAGACACGAAAATCTACGCGCTGGATGAGTTT
AATCTAATAGAGCATGTTTTGGCGTCATTCCTCATGCCAACATGAGCAGA
TATCCTCACGATGACATCATCATTCTTCATCCGTGCACACAATGTGCGTT
TCATGAAGCCACTGTCGCACCATCAATCAAGCCGACACCATGCCCTCATT
TATTTACACACCGTTTGTCGTTCCCCCTCTCTACGGTGCCTTGACGTCTG
CGCTTGTCCGTCATTCGTTCTTTTCTTTTTCTTTTCACTGCTGGATGTTG
TTGCCGTTTGGATACCAAAATCCCGCAGCCGTCGTACATGAAGATCCGCA
ACAAGCCGCACCCGTGGAACTGTGCTGACTGCACGCTGCTCGACACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18168:1..1897-

>mRNA_Ecto-sp13_S_contig18168.5614.1 ID=mRNA_Ecto-sp13_S_contig18168.5614.1|Name=mRNA_Ecto-sp13_S_contig18168.5614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18168:1..1897- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTTCTGCGCTTGTGAGGGCGGCGGTGCGGCGGCCGGCGGCAGCGGC
GGCTTCTTCGGCCCGTCGCAGCATGAGCGGCGACGCCGCACACGCAGCCG
AGGAGATGGCCAAGTGGAAAAAGATGACGGCCGGTATGGCGGTTTTGAGC
TTGGCCGTGACCACCCTGGTGCTGGCCACCGAAGAGCACCACCACATGGA
CGAAGATGCCCCCGTTCCGTCGTACATGAAGATCCGCAACAAGCCGCACC
CGTGGAACTGTGCTGACTGCACGCTGCTCGACACG
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