mRNA_Ecto-sp13_S_contig18167.5613.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18167.5613.1
Unique NamemRNA_Ecto-sp13_S_contig18167.5613.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18167.5613.1 vs. uniprot
Match: D7G3S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S3_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 1.100e-96
Identity = 180/227 (79.30%), Postives = 184/227 (81.06%), Query Frame = 1 
Query:    1 FMACFIVDWFLEPICKTHKFASRADRFKSLVRAVREGGDTVPKLMLKALEDNPEKVKDGEFGFFNSERLKILTSTTSTAGPKTKADGAAARNDNDGGQXXXXXXXXXGGAPGRTGRRVQLSVGAGESKVQVPVSFTEEEMRRCGLMDEGGIVKKEPVICYFAKPDTEDKKRDEEXXXXXXXXXXXXXXXKRSTLPDT-------------NSGAGDQGDTPTEQPNK 642
            FMACFIVDWFLEPICKTHKFASRADRFKSLVRAVR GGDTVPKLMLKALEDNP KVKDGEFGFFNSERLKILTST STAGPKTKADGAA +ND     XXXXXXXXXGGAPG TGRRVQLSVGAGESKVQV VSFTEEEM RCGLMDEGGIVKKEPVICYFA+ DTEDKKR+EE                RSTLPDT             +SGAGDQGDTPT QPNK
Sbjct:  615 FMACFIVDWFLEPICKTHKFASRADRFKSLVRAVRAGGDTVPKLMLKALEDNPGKVKDGEFGFFNSERLKILTSTASTAGPKTKADGAAPQNDXXXXXXXXXXXXXXGGAPGWTGRRVQLSVGAGESKVQVLVSFTEEEMSRCGLMDEGGIVKKEPVICYFAQTDTEDKKRNEEKDTAKNTKKSGSNKRYRSTLPDTKCYATRVNNLSLSSSGAGDQGDTPTAQPNK 841
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18167.5613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3S3_ECTSI1.100e-9679.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18167contigEcto-sp13_S_contig18167:300..2908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size791
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_000150.1
Cds size786
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462937.6473591-CDS-Ecto-sp13_S_contig18167:299..4951681462937.6473591-CDS-Ecto-sp13_S_contig18167:299..495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18167 300..495 -
1681462937.659199-CDS-Ecto-sp13_S_contig18167:1244..13401681462937.659199-CDS-Ecto-sp13_S_contig18167:1244..1340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18167 1245..1340 -
1681462937.6677504-CDS-Ecto-sp13_S_contig18167:2248..25071681462937.6677504-CDS-Ecto-sp13_S_contig18167:2248..2507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18167 2249..2507 -
1681462937.6830873-CDS-Ecto-sp13_S_contig18167:2670..29051681462937.6830873-CDS-Ecto-sp13_S_contig18167:2670..2905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18167 2671..2905 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462937.6986442-UTR-Ecto-sp13_S_contig18167:2905..29081681462937.6986442-UTR-Ecto-sp13_S_contig18167:2905..2908Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18167 2906..2908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18167.5613.1prot_Ecto-sp13_S_contig18167.5613.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18167 300..2905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18167.5613.1

>prot_Ecto-sp13_S_contig18167.5613.1 ID=prot_Ecto-sp13_S_contig18167.5613.1|Name=mRNA_Ecto-sp13_S_contig18167.5613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=262bp
MACFIVDWFLEPICKTHKFASRADRFKSLVRAVREGGDTVPKLMLKALED
NPEKVKDGEFGFFNSERLKILTSTTSTAGPKTKADGAAARNDNDGGQGGS
SRDDPPGGAPGRTGRRVQLSVGAGESKVQVPVSFTEEEMRRCGLMDEGGI
VKKEPVICYFAKPDTEDKKRDEEKDTAKNKKKSGSNKRKRSTLPDTNSGA
GDQGDTPTEQPNKKKKKSLRKAPDGTDSSGDEVLASDNHGGSGGIILENT
SSSSDDDSQDDD
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mRNA from alignment at Ecto-sp13_S_contig18167:300..2908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18167.5613.1 ID=mRNA_Ecto-sp13_S_contig18167.5613.1|Name=mRNA_Ecto-sp13_S_contig18167.5613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18167:300..2908- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCATGGCCTGCTTCATCGTAGATTGGTTCTTAGAGCCGATCTGCAAGAC
GCACAAATTTGCATCGAGGGCGGACAGATTCAAGAGCCTTGTTCGCGCTG
TCCGTGAAGGGGGCGATACGGTACCCAAGCTGATGCTCAAGGCGCTCGAG
GACAACCCTGAAAAGGTCAAAGACGGGGAGTTCGGGTTCTTCAACTCCGA
AAGACTGAAGATCCTGACATCTACGACATCTACAGCAGGTGAACACTCTG
TAGACCAGGCTACAGCAGGTGAAAACTCTAAAACTACTGTAGTAGGTTAG
GCTAGGTATTGTGCTTGCACAGTCTGGGACCCTCTGTTTAAGGCGGTGGA
GACCTAATCATGATTGTTCGTGACGACCCGCCCTCACCCAATTACCTGTA
GGCCCGAAGACGAAGGCCGATGGAGCAGCAGCACGAAACGACAATGACGG
AGGCCAAGGGGGATCCTCGCGTGATGACCCTCCTGGTGGTGCACCTGGGC
GGACTGGCCGGAGGGTGCAGCTTTCCGTGGGAGCCGGGGAATCTAAGGTG
CAGGTACCGGTATCATTTACCGAAGAGGAAATGCGTCGGTGCGGCTTGAT
GGATGAGGGGGGCATCGTCAAAAAGGAGCCAGTTATTTGCTACTTCGCCA
AACCCGACACGTGAGTGCAACAGCGGGGTACGGCCAAAGCTAAGACAGTT
ACGTTTTTGACACACCACTCGATCCTTTGAGCGGTGTCTCTCGTGTTGTT
TTTGTTAGTGTTGTTGAGACGTCCGAAAGAGGGCAACAAGCCCAACAAAC
GCCCTACTCGACCGATCAGATGAAAAGGTTGTTGGGTGAGTATTTTACAG
CCGTGCAATACCTTGCTCGAGCATTTCGCCGATTAAACGCGCTATTCGAC
CGATCAGGTCAAAAGGGGTTGGATGCGTATTTCGTAGCCATGCAACAACT
TTGTTTTCCTCGAGCTAGACAGTTACCACGTTTGTTAGCACGCCACTCCA
TCCCTTAAGTGTTATCTTTAAGTGTTCATGTTGTTGAGATGTCAAAGGAG
AGCAACTAAGCCCAACAAACGCCCTACTCGACCGATCAAATGAAAAGGTT
GATGGGTGAGTATTTCAAAGCCGTTCAATACCTTTGCTCGGGCTTTTCGA
CCCATCAAGTCAAAAGGTTTCTGAATGAGTATTTCATAGCTGCGCAATAA
CTTTTGCTCGAGCATTACACTGGTTTCATAGTCGACCAATCACTTACCAT
ATTGATCTGAGCGATGGGTGCTTTACGAGGTATTTTCACTAAGTGGGCTC
TACGTAGTCGCACGCGCAGTTGATGCATCCTTCACGAACAAACATGGAAG
AAAACCCGGGCCACACGGCTGAGGCCCAGACGTTTGACGAATATCATCAT
CATGGCACCCACAAGGCATCCAGGACAAGAGACGATAGTTGCGGACGTCT
TGGTCTCACACCGAATCGCTATTTTTCCATATCGACGTGTATTTCGGAAC
AATTACTCCGTACCGAACATTCCGCGGCGAAACAAGGGCCAGTTGTCTCG
ATTTCGCACGTAACCCAGCGAGGACAAGAAGCGCGATGAGGAGAAGGACA
CTGCCAAGAACAAGAAGAAGTCGGGCAGCAACAAGCGCAAGCGTTCGACA
CTACCCGACACAAAGTGAGAGCATCAAGTCGTCCACAGTCGAAGTCACTG
CCGAAGATTTTCTATTGTCCAAGTTGTTGGTCACTCCTGTTCACTCACGA
GTTGGAAAACCGTACGTGGCAACCACAGCCCCATTGCTACAGACCAATTT
CAAAAGTTCATTACCGCCCCCCTCCGCCATTCATTCGCCACCTCGATTGA
TTAGCTCTGTTACAACTTCGAATCGGCTGATCACTCGCCTCGTCTAACGA
ATGAGCGCATTCCACAAATGTGTTCGAATTGTCGGCAGCCTCCTCGACCG
ATCAGCGTAATCACCATAGACGAAATACTGGATCGCTCCATCAGATATAA
AGTTACTCGTTCGCTGTTAACAGCCGTTCTTCCTCCAGCAGCGGTGCGGG
GGACTCTGATACCTGTGTACACCGGCGGAGCGATCACTCATGTTGTCGAT
CCCTTCTCGATGTTCCACAATGTGCGCTCATTCAGCACCAATACAGAATG
TCCATAACCCGCCCCATAGACCGTTCGCCTCCTCGATCGATCAGCTCTGT
TACAAAATGGGTTCGACCGATCATTTCACTCCTTGAACGATCACTCGCCT
CCGCGACCGATCAGCGCATTCCCAAATGTGTTCCGGCTGTCATTATCCTC
CTCGATCGGTCAGTGCCATCATTGCAGGGAACGATATTTTGCGCACACGA
AGCAATGTATCGTTATTCCATTAGATGCTACGCTCCCCGTGTCAACAACC
TTTCTCTGTCCAGCAGCGGTGCGGGAGACCAAGGCGACACGCCTACAGAA
CAGCCTAACAAGAAGAAGAAGAAAAGTCTTAGGAAGGCACCCGATGGTAC
CGATTCCTCTGGTGACGAGGTGTTGGCTTCAGACAACCACGGCGGGAGTG
GTGGCATTATCCTAGAAAACACGTCCTCGTCGAGCGACGATGATTCACAA
GATGATGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18167:300..2908-

>mRNA_Ecto-sp13_S_contig18167.5613.1 ID=mRNA_Ecto-sp13_S_contig18167.5613.1|Name=mRNA_Ecto-sp13_S_contig18167.5613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18167:300..2908- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTGCTTCATCGTAGATTGGTTCTTAGAGCCGATCTGCAAGACGCA
CAAATTTGCATCGAGGGCGGACAGATTCAAGAGCCTTGTTCGCGCTGTCC
GTGAAGGGGGCGATACGGTACCCAAGCTGATGCTCAAGGCGCTCGAGGAC
AACCCTGAAAAGGTCAAAGACGGGGAGTTCGGGTTCTTCAACTCCGAAAG
ACTGAAGATCCTGACATCTACGACATCTACAGCAGGCCCGAAGACGAAGG
CCGATGGAGCAGCAGCACGAAACGACAATGACGGAGGCCAAGGGGGATCC
TCGCGTGATGACCCTCCTGGTGGTGCACCTGGGCGGACTGGCCGGAGGGT
GCAGCTTTCCGTGGGAGCCGGGGAATCTAAGGTGCAGGTACCGGTATCAT
TTACCGAAGAGGAAATGCGTCGGTGCGGCTTGATGGATGAGGGGGGCATC
GTCAAAAAGGAGCCAGTTATTTGCTACTTCGCCAAACCCGACACCGAGGA
CAAGAAGCGCGATGAGGAGAAGGACACTGCCAAGAACAAGAAGAAGTCGG
GCAGCAACAAGCGCAAGCGTTCGACACTACCCGACACAAACAGCGGTGCG
GGAGACCAAGGCGACACGCCTACAGAACAGCCTAACAAGAAGAAGAAGAA
AAGTCTTAGGAAGGCACCCGATGGTACCGATTCCTCTGGTGACGAGGTGT
TGGCTTCAGACAACCACGGCGGGAGTGGTGGCATTATCCTAGAAAACACG
TCCTCGTCGAGCGACGATGATTCACAAGATGATGAC
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