prot_Ecto-sp13_S_contig18163.5611.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18163.5611.1
Unique Nameprot_Ecto-sp13_S_contig18163.5611.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length228
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18163.5611.1 vs. uniprot
Match: D7FQX4_ECTSI (ATP-binding cassette, sub-family D, member 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX4_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 1.890e-84
Identity = 171/228 (75.00%), Postives = 175/228 (76.75%), Query Frame = 0 
Query:    1 MGAERPPRRLFSPLGRSEEEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GAAATPGCNAVPAAASTDRCRGEEPTAAAASAAGQGRNPSSFFADLDMLVRVFLVRGLFVERRWVFPLILTVTATAYEVCAASILNVISEFYLAISTLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVFFLHSWYLRGKMPYVLSTGEAGRDKRRGASFG 227
            MGAERPPRRL S LGRSEE   XXXXXXX                           GAAA PGC+AVPAAASTD               GQ R+PSSF ADL MLVRVFL+RGLFVERRWVFPLILTVTATAYEVCAASILNVIS+FYLAISTLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLV FLHSWYLRGKMPYVLSTGEAGRDKR GASFG
Sbjct:    2 MGAERPPRRLSSSLGRSEEXXXXXXXXXXNLLLPAAADALDDGATRRTGLLWLNSSGAAAIPGCDAVPAAASTDPRXXXXXXXXXXXXXGQRRSPSSFVADLGMLVRVFLLRGLFVERRWVFPLILTVTATAYEVCAASILNVISDFYLAISTLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVLFLHSWYLRGKMPYVLSTGEAGRDKRGGASFG 229
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BLAST of mRNA_Ecto-sp13_S_contig18163.5611.1 vs. uniprot
Match: A0A6H5KJY9_9PHAE (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY9_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.200e-84
Identity = 169/242 (69.83%), Postives = 176/242 (72.73%), Query Frame = 0 
Query:    1 MGAERPPRRLFSPLGRSEEEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAATPGCNAVPAAASTDRCRGEEPTAAAASAAGQGRNPSSFFADLDMLVRVFLVRGLFVERRWVFPLILTVTATAYEVCAASILNVISEFYLAISTLDAQLFVQ---------------VLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVFFLHSWYLRGKMPYVLSTGEAGRDKRRGASFG 227
            MGAER P RL S LGRSEE   XXXXXXXXXXXX                     GAAA PGC+A+PAAASTD              A Q  +PSSFFADL MLV+VFL+RGLFVERRWVFPLILTVTATAYEVCAASIL+VI +FYLAISTLDAQLFVQ               VLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLV FLHSWYLRGKMPYVLSTGEAGRDKR  ASFG
Sbjct:    5 MGAERSPLRLSSSLGRSEEXXXXXXXXXXXXXXXAAAEALYNGARRRTGLLWLNSGAAAIPGCDALPAAASTDPXXXXXXXXXXXXXASQWCSPSSFFADLGMLVKVFLLRGLFVERRWVFPLILTVTATAYEVCAASILSVIGDFYLAISTLDAQLFVQAKIEQLFDYTLLIYHVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVLFLHSWYLRGKMPYVLSTGEAGRDKRGAASFG 246
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BLAST of mRNA_Ecto-sp13_S_contig18163.5611.1 vs. uniprot
Match: A0A836CDC0_9STRA (ABC transporter transmembrane region 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDC0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.060e-24
Identity = 59/107 (55.14%), Postives = 74/107 (69.16%), Query Frame = 0 
Query:  106 RVFLVRGLFVERRWVFPLILTVTATAYEVCAASILNVISEFYLAISTLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVFFLHSWYLRGKMPYVLS 212
            R+    GL  +RRW  PL+L   A  YEV A+ I+ VI +FYLA+S+ D QLF+ VLWRS+LVV VV  L+A RD A EACAL WR  LV +LH+ YLRG +PY L+
Sbjct:  144 RICFWHGLLRDRRWCLPLLLVTLAITYEVAASFIMTVIGDFYLAVSSQDWQLFMNVLWRSMLVVAVVGTLRACRDFACEACALQWRCNLVRYLHAHYLRGTVPYQLT 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18163.5611.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQX4_ECTSI1.890e-8475.00ATP-binding cassette, sub-family D, member 4 n=1 T... [more]
A0A6H5KJY9_9PHAE2.200e-8469.83ABC transmembrane type-1 domain-containing protein... [more]
A0A836CDC0_9STRA1.060e-2455.14ABC transporter transmembrane region 2-domain-cont... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..118
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 155..175
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 176..227
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 144..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18163contigEcto-sp13_S_contig18163:896..3105 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18163.5611.1mRNA_Ecto-sp13_S_contig18163.5611.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18163 896..3105 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18163.5611.1 ID=prot_Ecto-sp13_S_contig18163.5611.1|Name=mRNA_Ecto-sp13_S_contig18163.5611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
MGAERPPRRLFSPLGRSEEEGEDEEDETHNLLLPAAADALNDGGRRRTGL
LWWNSGAAATPGCNAVPAAASTDRCRGEEPTAAAASAAGQGRNPSSFFAD
LDMLVRVFLVRGLFVERRWVFPLILTVTATAYEVCAASILNVISEFYLAI
STLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVFFLHS
WYLRGKMPYVLSTGEAGRDKRRGASFG*
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