mRNA_Ecto-sp13_S_contig18163.5611.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig18163.5611.1
Unique Name	mRNA_Ecto-sp13_S_contig18163.5611.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig18163.5611.1 vs. uniprot
Match: D7FQX4_ECTSI (ATP-binding cassette, sub-family D, member 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX4_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 1.890e-84
Identity = 171/228 (75.00%), Postives = 175/228 (76.75%), Query Frame = 1

Query:    1 MGAERPPRRLFSPLGRSEEEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GAAATPGCNAVPAAASTDRCRGEEPTAAAASAAGQGRNPSSFFADLDMLVRVFLVRGLFVERRWVFPLILTVTATAYEVCAASILNVISEFYLAISTLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVFFLHSWYLRGKMPYVLSTGEAGRDKRRGASFG 681
            MGAERPPRRL S LGRSEE   XXXXXXX                           GAAA PGC+AVPAAASTD               GQ R+PSSF ADL MLVRVFL+RGLFVERRWVFPLILTVTATAYEVCAASILNVIS+FYLAISTLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLV FLHSWYLRGKMPYVLSTGEAGRDKR GASFG
Sbjct:    2 MGAERPPRRLSSSLGRSEEXXXXXXXXXXNLLLPAAADALDDGATRRTGLLWLNSSGAAAIPGCDAVPAAASTDPRXXXXXXXXXXXXXGQRRSPSSFVADLGMLVRVFLLRGLFVERRWVFPLILTVTATAYEVCAASILNVISDFYLAISTLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVLFLHSWYLRGKMPYVLSTGEAGRDKRGGASFG 229

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BLAST of mRNA_Ecto-sp13_S_contig18163.5611.1 vs. uniprot
Match: A0A6H5KJY9_9PHAE (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY9_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.200e-84
Identity = 169/242 (69.83%), Postives = 176/242 (72.73%), Query Frame = 1

Query:    1 MGAERPPRRLFSPLGRSEEEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAATPGCNAVPAAASTDRCRGEEPTAAAASAAGQGRNPSSFFADLDMLVRVFLVRGLFVERRWVFPLILTVTATAYEVCAASILNVISEFYLAISTLDAQLFVQ---------------VLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVFFLHSWYLRGKMPYVLSTGEAGRDKRRGASFG 681
            MGAER P RL S LGRSEE   XXXXXXXXXXXX                     GAAA PGC+A+PAAASTD              A Q  +PSSFFADL MLV+VFL+RGLFVERRWVFPLILTVTATAYEVCAASIL+VI +FYLAISTLDAQLFVQ               VLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLV FLHSWYLRGKMPYVLSTGEAGRDKR  ASFG
Sbjct:    5 MGAERSPLRLSSSLGRSEEXXXXXXXXXXXXXXXAAAEALYNGARRRTGLLWLNSGAAAIPGCDALPAAASTDPXXXXXXXXXXXXXASQWCSPSSFFADLGMLVKVFLLRGLFVERRWVFPLILTVTATAYEVCAASILSVIGDFYLAISTLDAQLFVQAKIEQLFDYTLLIYHVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVLFLHSWYLRGKMPYVLSTGEAGRDKRGAASFG 246

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BLAST of mRNA_Ecto-sp13_S_contig18163.5611.1 vs. uniprot
Match: A0A836CDC0_9STRA (ABC transporter transmembrane region 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDC0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.060e-24
Identity = 59/107 (55.14%), Postives = 74/107 (69.16%), Query Frame = 1

Query:  316 RVFLVRGLFVERRWVFPLILTVTATAYEVCAASILNVISEFYLAISTLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVFFLHSWYLRGKMPYVLS 636
            R+    GL  +RRW  PL+L   A  YEV A+ I+ VI +FYLA+S+ D QLF+ VLWRS+LVV VV  L+A RD A EACAL WR  LV +LH+ YLRG +PY L+
Sbjct:  144 RICFWHGLLRDRRWCLPLLLVTLAITYEVAASFIMTVIGDFYLAVSSQDWQLFMNVLWRSMLVVAVVGTLRACRDFACEACALQWRCNLVRYLHAHYLRGTVPYQLT 250

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig18163.5611.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig18163.5611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FQX4_ECTSI	1.890e-84	75.00	ATP-binding cassette, sub-family D, member 4 n=1 T...	[more]
A0A6H5KJY9_9PHAE	2.200e-84	69.83	ABC transmembrane type-1 domain-containing protein...	[more]
A0A836CDC0_9STRA	1.060e-24	55.14	ABC transporter transmembrane region 2-domain-cont...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig18163	contig	Ecto-sp13_S_contig18163:896..3105 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	287.3
Seed ortholog evalue	6.1e-75
Seed eggNOG ortholog	2880.D7FQX4
Preferred name	ABCD2
Model size	684
KEGG ko	ko:K05675,ko:K05676,ko:K05677,ko:K05678,ko:K15628
KEGG TC	3.A.1.203,3.A.1.203.1,3.A.1.203.2,3.A.1.203.3,3.A.1.203.6,3.A.1.203.7
KEGG Pathway	ko02010,ko04146,map02010,map04146
Hectar predicted targeting category	other localisation
GOs	GO:0000038,GO:0000166,GO:0001676,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010565,GO:0010876,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019395,GO:0019752,GO:0019899,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031903,GO:0031998,GO:0032000,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033540,GO:0033559,GO:0034220,GO:0034440,GO:0035639,GO:0036094,GO:0036109,GO:0042579,GO:0042623,GO:0042626,GO:0042758,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043492,GO:0043574,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045923,GO:0046320,GO:0046321,GO:0046395,GO:0046907,GO:0046942,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0071702,GO:0071704,GO:0071840,GO:0072329,GO:0080090,GO:0097159,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:1901265,GO:1901363,GO:1901575,GO:1902001,GO:1903825,GO:1905039
Exons	2
EggNOG free text desc.	ATP-binding cassette sub-family D
EggNOG OGs	COG4178@1,KOG0060@2759,KOG0064@2759
Cds size	684
COG Functional cat.	G
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko02000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462937.5360267-CDS-Ecto-sp13_S_contig18163:895..1375	1681462937.5360267-CDS-Ecto-sp13_S_contig18163:895..1375	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig18163 896..1375 +
1681462937.5514035-CDS-Ecto-sp13_S_contig18163:2901..3105	1681462937.5514035-CDS-Ecto-sp13_S_contig18163:2901..3105	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig18163 2902..3105 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig18163.5611.1	prot_Ecto-sp13_S_contig18163.5611.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig18163 896..3105 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig18163:896..3105+
coding sequence from alignment at Ecto-sp13_S_contig18163:896..3105+

protein sequence of mRNA_Ecto-sp13_S_contig18163.5611.1

>prot_Ecto-sp13_S_contig18163.5611.1 ID=prot_Ecto-sp13_S_contig18163.5611.1|Name=mRNA_Ecto-sp13_S_contig18163.5611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
MGAERPPRRLFSPLGRSEEEGEDEEDETHNLLLPAAADALNDGGRRRTGL
LWWNSGAAATPGCNAVPAAASTDRCRGEEPTAAAASAAGQGRNPSSFFAD
LDMLVRVFLVRGLFVERRWVFPLILTVTATAYEVCAASILNVISEFYLAI
STLDAQLFVQVLWRSLLVVTVVAALKAGRDLAKEACALVWRQRLVFFLHS
WYLRGKMPYVLSTGEAGRDKRRGASFG*

mRNA from alignment at Ecto-sp13_S_contig18163:896..3105+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig18163.5611.1 ID=mRNA_Ecto-sp13_S_contig18163.5611.1|Name=mRNA_Ecto-sp13_S_contig18163.5611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18163:896..3105+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGCCGAGCGGCCACCACGGCGCCTGTTCTCACCACTCGGACGCAG
TGAGGAGGAGGGGGAGGATGAGGAGGACGAGACCCACAACCTATTGCTGC
CCGCCGCGGCCGATGCACTCAACGACGGTGGAAGGAGGCGCACGGGACTG
TTATGGTGGAACAGCGGTGCTGCCGCAACACCCGGTTGCAACGCTGTTCC
TGCTGCTGCAAGCACCGACCGATGCCGCGGTGAAGAACCCACTGCTGCTG
CCGCAAGCGCTGCAGGCCAAGGACGCAACCCGAGCTCCTTCTTTGCGGAC
CTGGACATGCTGGTGAGGGTGTTCTTGGTGCGCGGCCTGTTCGTCGAGAG
GCGGTGGGTGTTTCCGCTCATCCTGACCGTCACCGCCACGGCGTACGAGG
TCTGCGCGGCGAGTATCCTCAACGTCATCAGCGAGTTCTACTTGGCCATA
TCCACCTTGGACGCCCAGCTTTTCGTGCAGGCAAGTGCAATGCTTTTTTT
CGGTGATAGAAGAGGAAACAGGGGAGTGGAGGCGAGAGGCGGAGAATTTC
GACGCATATGAGACATGGTCGGTCACAGACCTTCCGCGAGACAACACCGC
GACGCAACAAGTCTGCTTCTACGCTCGTGTTGAACACCACGGCTACCGAT
CGTTTTTGTATATATACGCGATCTGCTCTGCGTAAAGACACACGGTAATG
CTTTCGAAGCTCCCTGAAGGAGTGCTTGTTCCCGTACCGCGTTGCATGCA
TCTAGATCCGTTGTTGTGCACTCCTCCTTGTCCTCCCCCCCGTAAACGTA
CGCAACACTCGTGCCCTTGAGTGGCTCAGCAATCTGTTTCCTCGCCCGCG
CCCCATCACAAAATGCTGTCGGTTCTCTCGGGTTTCCCCAATTTATTTCC
CGTTGAAACCTGATAATCCACAGATAAGCAGCAGCCAAGAATGTACGTGC
GGTATTTTTTCGTCTCAGTGTCTTGGGCCGTCCGGCAGATGCCACGGCAG
TTGGGAGAGAACACCGTCATCAGCTCACCGTTACGCGTTGTTGAATAGTG
TATTGGTGTGTGCTCCCACTGCTGTGCTTTGGCCTCGCGATGTTTGTGTC
CCCATGTGGCGCAGAAGTCGAGCAACTCTTTGGCTACACGTTCCTTGTAT
ACCACACACGTGAGAGTGTTGCACTGTGCAGAAGTCGGGAAAGAGAAATC
GGCTGACTTCCACATGGTTTTCCACATATGCAGTCAATCGAGCTGCTGAG
TTTTCCGCTCGAACCATCAAGCAAGAGGGCATGGAAGCGTTAGTCGCGTT
CTTTACCCTACTGCGGTGCTTATGCTTCTTTCCCGTTTGCTCCCGCCTCG
TAGTGGGCAGCGTCCGCAGTGCACTTTCGGGGCAAAATTCGTTCTACCGT
TGTGTCTACTTGAAGCACCTTCGGAATTTCTGCCGGTTGGTATCGGGCGC
GGGGGAAGTTCCGTCACGGCATCTGTGACGACGCATTCTAAGGAAGGGAA
TCCACGGCGGTCTCCGGGTGAAGGAAATGTTGCTCCGCGTTTGCCGGGTG
TTCGCGAGCTTGCGCACGATTTTCCCGCCTCCTCGAGGGCCATCGCTGTT
TCGACAACGCCGTGTAATTTAATGCTGTAGTTCATTGTTATCTTACACGC
AAATGGGGAGCGGGTTGCGGGCAAAGTCGTCCCCAGTAGTGGCATGTGCA
CCAAATCCTACCACGAGCGCGCCCTTCGCGCGCGCCTACACACGCGGTTT
TCACTGGGGCCGCGGTTCTGTGTTGTAGTGCTCGCGATGGGTTTCAACTG
TTTCCTTTAACCCCTGCGCACCCGCCCCCTGTCCTTTTCTCATTCGTCCC
GCTCTCTCTCTCTCTCTCTCTGCCTCTCTGTAGCTTTTCTGATCTTCTTT
CCTAGATGACCTCCCCAACCGCTCTTAAATCCTCTTTTCGCTCACCTCCC
CCCCCTCCCCCCCCCCGCGCGCGCCGATTCCCGCCTACCTTCTCTCGCTG
TGGCAGGTCCTGTGGCGGTCTCTGCTAGTCGTCACCGTGGTCGCCGCTCT
GAAGGCAGGGAGAGATCTTGCTAAGGAAGCGTGCGCGTTGGTCTGGCGGC
AGCGGCTGGTCTTTTTCCTCCACTCCTGGTACCTTCGGGGGAAGATGCCG
TACGTGCTTTCCACGGGAGAGGCGGGCCGGGATAAGCGCCGCGGGGCTTC
TTTCGGGTGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18163:896..3105+

>mRNA_Ecto-sp13_S_contig18163.5611.1 ID=mRNA_Ecto-sp13_S_contig18163.5611.1|Name=mRNA_Ecto-sp13_S_contig18163.5611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18163:896..3105+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGCCGAGCGGCCACCACGGCGCCTGTTCTCACCACTCGGACGCAG
TGAGGAGGAGGGGGAGGATGAGGAGGACGAGACCCACAACCTATTGCTGC
CCGCCGCGGCCGATGCACTCAACGACGGTGGAAGGAGGCGCACGGGACTG
TTATGGTGGAACAGCGGTGCTGCCGCAACACCCGGTTGCAACGCTGTTCC
TGCTGCTGCAAGCACCGACCGATGCCGCGGTGAAGAACCCACTGCTGCTG
CCGCAAGCGCTGCAGGCCAAGGACGCAACCCGAGCTCCTTCTTTGCGGAC
CTGGACATGCTGGTGAGGGTGTTCTTGGTGCGCGGCCTGTTCGTCGAGAG
GCGGTGGGTGTTTCCGCTCATCCTGACCGTCACCGCCACGGCGTACGAGG
TCTGCGCGGCGAGTATCCTCAACGTCATCAGCGAGTTCTACTTGGCCATA
TCCACCTTGGACGCCCAGCTTTTCGTGCAGGTCCTGTGGCGGTCTCTGCT
AGTCGTCACCGTGGTCGCCGCTCTGAAGGCAGGGAGAGATCTTGCTAAGG
AAGCGTGCGCGTTGGTCTGGCGGCAGCGGCTGGTCTTTTTCCTCCACTCC
TGGTACCTTCGGGGGAAGATGCCGTACGTGCTTTCCACGGGAGAGGCGGG
CCGGGATAAGCGCCGCGGGGCTTCTTTCGGGTGA